Wall clock time and date at job start Tue Mar 31 2020 06:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47177 * 2 1 4 4 C 1.50698 * 109.47160 * 179.97438 * 3 2 1 5 5 C 1.38244 * 119.99767 * 90.00526 * 4 3 2 6 6 C 1.38231 * 120.00132 * 179.97438 * 5 4 3 7 7 C 1.38237 * 120.00062 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00358 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47157 * 89.99604 * 8 7 6 10 10 C 1.52999 * 109.46806 * 180.02562 * 9 8 7 11 11 C 1.50710 * 109.46859 * 180.02562 * 10 9 8 12 12 O 1.21287 * 119.99746 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99855 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00106 * 359.97438 * 13 11 10 15 15 C 1.37095 * 119.99814 * 179.97438 * 13 11 10 16 16 H 1.07996 * 120.00216 * 322.82535 * 15 13 11 17 17 C 1.38953 * 120.00032 * 142.82496 * 15 13 11 18 18 N 1.31411 * 120.00253 * 158.40514 * 17 15 13 19 19 Si 1.86806 * 119.99738 * 338.41097 * 17 15 13 20 20 H 1.48498 * 109.47300 * 95.72163 * 19 17 15 21 21 H 1.48507 * 109.46766 * 215.72216 * 19 17 15 22 22 H 1.48502 * 109.47005 * 335.71565 * 19 17 15 23 23 C 1.38236 * 119.99674 * 0.25699 * 7 6 5 24 24 C 1.38232 * 120.00331 * 359.48970 * 23 7 6 25 25 H 1.08992 * 109.46711 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46669 * 300.00069 * 1 2 3 27 27 H 1.08997 * 109.47182 * 59.99341 * 1 2 3 28 28 H 1.09004 * 109.47289 * 240.00356 * 2 1 3 29 29 H 1.09003 * 109.47739 * 119.99974 * 2 1 3 30 30 H 1.09000 * 109.46881 * 60.00486 * 3 2 1 31 31 H 1.08997 * 109.47603 * 300.00402 * 3 2 1 32 32 H 1.07997 * 119.99824 * 359.97438 * 5 4 3 33 33 H 1.07994 * 120.00238 * 179.97438 * 6 5 4 34 34 H 1.08991 * 109.47334 * 210.00031 * 8 7 6 35 35 H 1.09004 * 109.46991 * 329.99929 * 8 7 6 36 36 H 1.08991 * 109.47347 * 300.00419 * 9 8 7 37 37 H 1.09000 * 109.47065 * 60.00750 * 9 8 7 38 38 H 1.08998 * 109.47269 * 299.99884 * 10 9 8 39 39 H 1.09004 * 109.47289 * 60.00357 * 10 9 8 40 40 H 1.09006 * 109.46969 * 85.13336 * 14 13 11 41 41 H 1.08998 * 109.47171 * 205.13422 * 14 13 11 42 42 H 1.09003 * 109.47019 * 325.14138 * 14 13 11 43 43 H 0.96998 * 119.99660 * 179.97438 * 18 17 15 44 44 H 1.08009 * 119.99878 * 179.72486 * 23 7 6 45 45 H 1.07996 * 120.00114 * 180.25465 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2387 1.4424 -1.1963 6 6 5.6210 1.4430 -1.1958 7 6 6.3117 1.4430 0.0016 8 6 7.8187 1.4430 0.0022 9 6 8.3288 2.8855 0.0022 10 6 9.8588 2.8854 0.0022 11 6 10.3611 4.3063 0.0029 12 8 9.5730 5.2282 0.0028 13 7 11.6862 4.5526 0.0024 14 6 12.6382 3.4390 0.0019 15 6 12.1432 5.8451 0.0025 16 1 11.6205 6.6027 -0.5623 17 6 13.2791 6.1804 0.7293 18 7 13.9626 7.2592 0.4197 19 14 13.8345 5.0974 2.1465 20 1 14.8717 4.1487 1.6675 21 1 14.4004 5.9462 3.2257 22 1 12.6728 4.3367 2.6729 23 6 5.6201 1.4372 1.1985 24 6 4.2378 1.4420 1.1980 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.6990 1.4420 -2.1318 33 1 6.1613 1.4425 -2.1309 34 1 8.1817 0.9293 0.8923 35 1 8.1824 0.9291 -0.8876 36 1 7.9658 3.3993 -0.8878 37 1 7.9652 3.3994 0.8921 38 1 10.2221 2.3716 0.8922 39 1 10.2221 2.3716 -0.8878 40 1 12.8077 3.1064 -1.0222 41 1 13.5816 3.7673 0.4381 42 1 12.2335 2.6148 0.5893 43 1 14.7553 7.4933 0.9273 44 1 6.1598 1.4328 2.1340 45 1 3.6975 1.4416 2.1331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592757745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:05 Heat of formation + Delta-G solvation = -32.574570 kcal Electronic energy + Delta-G solvation = -21860.993482 eV Core-core repulsion = 18649.569555 eV Total energy + Delta-G solvation = -3211.423927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.66439 -38.68400 -36.00004 -34.86736 -33.95106 -32.04289 -31.11824 -30.95339 -28.21402 -26.42849 -25.74458 -24.24736 -22.76977 -22.25881 -21.38585 -20.38733 -18.63540 -17.02571 -16.35498 -16.04580 -15.88507 -15.51569 -15.22120 -15.05043 -14.60580 -13.98019 -13.84024 -13.66037 -13.43368 -13.38241 -12.86598 -12.62725 -12.50547 -12.43984 -12.22467 -12.18066 -11.85515 -11.56450 -11.48199 -11.25587 -11.12564 -11.04431 -10.86095 -10.76816 -10.69384 -10.35678 -10.32050 -9.90360 -9.04522 -8.94085 -8.52986 -8.40684 -7.70056 -6.36673 -3.93086 1.30195 1.38377 3.03954 3.22882 3.27356 3.69187 3.79862 4.16692 4.46972 4.54653 4.60844 4.79644 4.83123 4.88344 4.98234 5.01481 5.12421 5.16736 5.33158 5.40016 5.43066 5.47228 5.53188 5.55852 5.56487 5.69143 5.72377 5.81270 5.83949 5.88230 5.94145 5.97704 6.03637 6.05318 6.11596 6.19877 6.31003 6.41003 6.44246 6.55727 6.67249 6.69623 6.99679 7.58378 8.32536 8.55667 9.01210 9.36002 9.82986 10.75777 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.041197 B = 0.002411 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.501600 B =11611.735108 C =11675.048977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.080 4.080 4 C -0.093 4.093 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.076 4.076 8 C -0.083 4.083 9 C -0.093 4.093 10 C -0.136 4.136 11 C 0.462 3.538 12 O -0.567 6.567 13 N -0.475 5.475 14 C 0.065 3.935 15 C -0.316 4.316 16 H 0.104 0.896 17 C 0.056 3.944 18 N -0.866 5.866 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.115 4.115 24 C -0.116 4.116 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.273 0.727 44 H 0.121 0.879 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.774 -18.146 -0.214 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.117 4.117 4 C -0.093 4.093 5 C -0.134 4.134 6 C -0.132 4.132 7 C -0.076 4.076 8 C -0.120 4.120 9 C -0.131 4.131 10 C -0.177 4.177 11 C 0.251 3.749 12 O -0.448 6.448 13 N -0.197 5.197 14 C -0.079 4.079 15 C -0.443 4.443 16 H 0.122 0.878 17 C -0.149 4.149 18 N -0.503 5.503 19 Si 0.709 3.291 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.133 4.133 24 C -0.134 4.134 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.139 0.861 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.995 -17.531 -0.182 25.850 hybrid contribution 0.672 -0.474 0.799 1.147 sum -18.323 -18.006 0.616 25.697 Atomic orbital electron populations 1.21794 0.95789 1.01622 1.01851 1.21512 0.95523 0.96238 1.02338 1.20613 0.91112 0.97188 1.02773 1.19832 0.95432 1.00771 0.93284 1.20981 0.94151 1.00937 0.97370 1.21052 0.94068 1.00368 0.97745 1.19943 0.95940 0.98629 0.93093 1.20702 0.90504 0.98155 1.02682 1.21255 0.93769 0.94322 1.03762 1.21653 0.96727 0.96537 1.02749 1.20339 0.82843 0.90249 0.81490 1.90551 1.54630 1.46510 1.53147 1.43724 1.03757 1.06090 1.66169 1.21977 0.94642 0.90347 1.00892 1.19060 1.10769 0.84866 1.29587 0.87824 1.25384 0.96047 0.96297 0.97170 1.69761 1.15916 1.26220 1.38401 0.86905 0.78843 0.80239 0.83107 1.20346 1.21520 1.18973 1.21059 0.94071 1.00363 0.97761 1.20979 0.94154 1.00929 0.97372 0.92750 0.92716 0.92704 0.91916 0.91923 0.91167 0.91155 0.86406 0.86090 0.91122 0.91079 0.91263 0.91280 0.90301 0.90283 0.93107 0.91760 0.92736 0.91670 0.86110 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 3 C -0.08 -0.64 5.34 -27.88 -0.15 -0.79 16 4 C -0.09 -0.96 5.13 -104.62 -0.54 -1.50 16 5 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 6 C -0.11 -1.32 9.70 -39.58 -0.38 -1.71 16 7 C -0.08 -0.93 5.13 -104.62 -0.54 -1.46 16 8 C -0.08 -0.99 5.35 -27.88 -0.15 -1.13 16 9 C -0.09 -1.45 4.49 -26.73 -0.12 -1.57 16 10 C -0.14 -2.28 4.32 -27.88 -0.12 -2.40 16 11 C 0.46 10.90 7.63 -10.98 -0.08 10.81 16 12 O -0.57 -15.67 15.85 5.55 0.09 -15.59 16 13 N -0.47 -11.76 2.59 -122.19 -0.32 -12.08 16 14 C 0.07 1.29 8.78 59.85 0.53 1.81 16 15 C -0.32 -9.19 9.37 -14.93 -0.14 -9.33 16 16 H 0.10 3.39 7.90 -52.49 -0.41 2.98 16 17 C 0.06 1.59 5.29 -17.47 -0.09 1.50 16 18 N -0.87 -25.52 13.96 55.50 0.77 -24.75 16 19 Si 0.88 20.87 24.96 -169.99 -4.24 16.62 16 20 H -0.28 -6.04 6.69 56.52 0.38 -5.67 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 23 C -0.11 -1.34 9.70 -39.58 -0.38 -1.72 16 24 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 36 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 37 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 38 H 0.08 1.18 7.41 -51.93 -0.38 0.79 16 39 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.35 3.42 -51.93 -0.18 1.17 16 42 H 0.05 0.88 6.64 -51.93 -0.34 0.54 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -33.17 365.14 -8.57 -41.74 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.65 Total: 0.81 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -2.73 Total: -12.27 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.46 Total: -36.82 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.09 Total: -15.59 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.24 Total: 16.62 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.17 -8.57 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592757745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.167 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds