Wall clock time and date at job start Tue Mar 31 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47177 * 2 1 4 4 C 1.50698 * 109.47160 * 179.97438 * 3 2 1 5 5 C 1.38244 * 119.99767 * 90.00526 * 4 3 2 6 6 C 1.38231 * 120.00132 * 179.97438 * 5 4 3 7 7 C 1.38237 * 120.00062 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00358 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47157 * 89.99604 * 8 7 6 10 10 C 1.52999 * 109.46806 * 180.02562 * 9 8 7 11 11 C 1.50710 * 109.46859 * 180.02562 * 10 9 8 12 12 O 1.21287 * 119.99746 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99855 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00106 * 359.97438 * 13 11 10 15 15 C 1.37095 * 119.99814 * 179.97438 * 13 11 10 16 16 H 1.07996 * 120.00216 * 322.82535 * 15 13 11 17 17 C 1.38953 * 120.00032 * 142.82496 * 15 13 11 18 18 N 1.31411 * 120.00253 * 158.40514 * 17 15 13 19 19 Si 1.86806 * 119.99738 * 338.41097 * 17 15 13 20 20 H 1.48498 * 109.47300 * 95.72163 * 19 17 15 21 21 H 1.48507 * 109.46766 * 215.72216 * 19 17 15 22 22 H 1.48502 * 109.47005 * 335.71565 * 19 17 15 23 23 C 1.38236 * 119.99674 * 0.25699 * 7 6 5 24 24 C 1.38232 * 120.00331 * 359.48970 * 23 7 6 25 25 H 1.08992 * 109.46711 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46669 * 300.00069 * 1 2 3 27 27 H 1.08997 * 109.47182 * 59.99341 * 1 2 3 28 28 H 1.09004 * 109.47289 * 240.00356 * 2 1 3 29 29 H 1.09003 * 109.47739 * 119.99974 * 2 1 3 30 30 H 1.09000 * 109.46881 * 60.00486 * 3 2 1 31 31 H 1.08997 * 109.47603 * 300.00402 * 3 2 1 32 32 H 1.07997 * 119.99824 * 359.97438 * 5 4 3 33 33 H 1.07994 * 120.00238 * 179.97438 * 6 5 4 34 34 H 1.08991 * 109.47334 * 210.00031 * 8 7 6 35 35 H 1.09004 * 109.46991 * 329.99929 * 8 7 6 36 36 H 1.08991 * 109.47347 * 300.00419 * 9 8 7 37 37 H 1.09000 * 109.47065 * 60.00750 * 9 8 7 38 38 H 1.08998 * 109.47269 * 299.99884 * 10 9 8 39 39 H 1.09004 * 109.47289 * 60.00357 * 10 9 8 40 40 H 1.09006 * 109.46969 * 85.13336 * 14 13 11 41 41 H 1.08998 * 109.47171 * 205.13422 * 14 13 11 42 42 H 1.09003 * 109.47019 * 325.14138 * 14 13 11 43 43 H 0.96998 * 119.99660 * 179.97438 * 18 17 15 44 44 H 1.08009 * 119.99878 * 179.72486 * 23 7 6 45 45 H 1.07996 * 120.00114 * 180.25465 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2387 1.4424 -1.1963 6 6 5.6210 1.4430 -1.1958 7 6 6.3117 1.4430 0.0016 8 6 7.8187 1.4430 0.0022 9 6 8.3288 2.8855 0.0022 10 6 9.8588 2.8854 0.0022 11 6 10.3611 4.3063 0.0029 12 8 9.5730 5.2282 0.0028 13 7 11.6862 4.5526 0.0024 14 6 12.6382 3.4390 0.0019 15 6 12.1432 5.8451 0.0025 16 1 11.6205 6.6027 -0.5623 17 6 13.2791 6.1804 0.7293 18 7 13.9626 7.2592 0.4197 19 14 13.8345 5.0974 2.1465 20 1 14.8717 4.1487 1.6675 21 1 14.4004 5.9462 3.2257 22 1 12.6728 4.3367 2.6729 23 6 5.6201 1.4372 1.1985 24 6 4.2378 1.4420 1.1980 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.6990 1.4420 -2.1318 33 1 6.1613 1.4425 -2.1309 34 1 8.1817 0.9293 0.8923 35 1 8.1824 0.9291 -0.8876 36 1 7.9658 3.3993 -0.8878 37 1 7.9652 3.3994 0.8921 38 1 10.2221 2.3716 0.8922 39 1 10.2221 2.3716 -0.8878 40 1 12.8077 3.1064 -1.0222 41 1 13.5816 3.7673 0.4381 42 1 12.2335 2.6148 0.5893 43 1 14.7553 7.4933 0.9273 44 1 6.1598 1.4328 2.1340 45 1 3.6975 1.4416 2.1331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592757745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:04 Heat of formation + Delta-G solvation = -51.122336 kcal Electronic energy + Delta-G solvation = -21861.797773 eV Core-core repulsion = 18649.569555 eV Total energy + Delta-G solvation = -3212.228218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.67170 -40.31025 -37.00722 -36.54777 -35.00096 -34.11151 -32.10750 -31.76664 -29.29143 -28.07688 -27.08464 -25.62935 -23.58901 -23.25542 -22.24425 -21.22036 -20.42333 -19.05281 -17.85367 -17.41886 -16.98059 -16.83205 -16.42052 -16.04015 -15.54400 -15.42423 -14.98849 -14.60450 -14.55328 -14.41968 -14.22855 -14.13812 -13.97447 -13.61403 -13.45226 -13.16573 -12.99994 -12.73403 -12.54043 -12.40508 -12.36369 -12.11225 -11.93918 -11.92451 -11.81598 -11.54127 -11.52632 -11.44949 -11.05988 -10.35819 -9.77392 -9.69852 -9.32868 -8.52380 -6.15115 0.46538 0.54996 1.19575 1.32799 1.45658 1.98302 2.17686 2.74141 2.88070 2.97808 3.80626 3.91155 3.94316 3.96917 4.09778 4.18318 4.24168 4.27978 4.34056 4.39111 4.50512 4.56309 4.60050 4.66275 4.71120 4.75033 4.81769 4.86016 4.88521 4.90428 4.94071 5.02403 5.16174 5.16633 5.25815 5.31774 5.33788 5.45643 5.46704 5.54213 5.58208 5.77065 5.81030 6.02133 6.18906 6.57187 6.94848 7.31500 7.90317 8.65440 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.041197 B = 0.002411 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.501600 B =11611.735108 C =11675.048977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.078 4.078 4 C -0.097 4.097 5 C -0.127 4.127 6 C -0.127 4.127 7 C -0.096 4.096 8 C -0.070 4.070 9 C -0.086 4.086 10 C -0.122 4.122 11 C 0.450 3.550 12 O -0.624 6.624 13 N -0.489 5.489 14 C 0.057 3.943 15 C -0.339 4.339 16 H 0.038 0.962 17 C 0.005 3.995 18 N -0.914 5.914 19 Si 0.960 3.040 20 H -0.236 1.236 21 H -0.292 1.292 22 H -0.256 1.256 23 C -0.128 4.128 24 C -0.127 4.127 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.280 0.720 44 H 0.129 0.871 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.768 -21.954 0.886 28.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.115 4.115 4 C -0.097 4.097 5 C -0.145 4.145 6 C -0.145 4.145 7 C -0.096 4.096 8 C -0.107 4.107 9 C -0.125 4.125 10 C -0.161 4.161 11 C 0.241 3.759 12 O -0.509 6.509 13 N -0.211 5.211 14 C -0.085 4.085 15 C -0.467 4.467 16 H 0.056 0.944 17 C -0.197 4.197 18 N -0.552 5.552 19 Si 0.783 3.217 20 H -0.161 1.161 21 H -0.219 1.219 22 H -0.180 1.180 23 C -0.146 4.146 24 C -0.145 4.145 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.089 0.911 44 H 0.147 0.853 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.974 -21.378 0.894 28.598 hybrid contribution 0.574 0.813 0.363 1.060 sum -18.400 -20.564 1.257 27.623 Atomic orbital electron populations 1.21780 0.94813 1.02122 1.02168 1.21471 0.96324 0.95410 1.02043 1.20646 0.89607 0.97973 1.03270 1.20148 0.96720 0.99771 0.93089 1.21253 0.94156 1.00764 0.98316 1.21287 0.94694 1.00464 0.98091 1.20085 0.96314 0.99685 0.93490 1.20596 0.90265 0.95409 1.04466 1.21159 0.93202 0.96608 1.01492 1.21671 0.97066 0.91575 1.05821 1.21647 0.82086 0.92797 0.79344 1.90518 1.56077 1.49167 1.55173 1.43908 1.05243 1.05630 1.66336 1.22259 0.93192 0.89565 1.03452 1.18663 1.11179 0.86481 1.30409 0.94442 1.26281 0.95612 0.98319 0.99482 1.69886 1.16825 1.28726 1.39756 0.85682 0.79460 0.78627 0.77966 1.16102 1.21888 1.18019 1.21289 0.94693 1.00490 0.98095 1.21250 0.94161 1.00781 0.98315 0.92183 0.92415 0.92394 0.92211 0.92227 0.90681 0.90656 0.84884 0.85266 0.89298 0.89228 0.93659 0.93717 0.86981 0.86853 0.90630 0.92817 0.88078 0.91052 0.85306 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.81 16 2 C -0.11 -1.45 5.92 30.59 0.18 -1.27 16 3 C -0.08 -1.13 5.34 29.85 0.16 -0.97 16 4 C -0.10 -1.90 5.13 -19.86 -0.10 -2.00 16 5 C -0.13 -2.58 9.70 22.27 0.22 -2.36 16 6 C -0.13 -2.82 9.70 22.27 0.22 -2.60 16 7 C -0.10 -2.20 5.13 -19.86 -0.10 -2.30 16 8 C -0.07 -1.48 5.35 29.85 0.16 -1.32 16 9 C -0.09 -2.58 4.49 30.59 0.14 -2.44 16 10 C -0.12 -3.70 4.32 29.85 0.13 -3.57 16 11 C 0.45 21.18 7.63 87.66 0.67 21.85 16 12 O -0.62 -36.15 15.85 -3.05 -0.05 -36.20 16 13 N -0.49 -23.99 2.59 -658.88 -1.70 -25.69 16 14 C 0.06 2.04 8.78 127.77 1.12 3.16 16 15 C -0.34 -20.59 9.37 84.04 0.79 -19.80 16 16 H 0.04 2.69 7.90 -2.91 -0.02 2.66 16 17 C 0.00 0.26 5.29 84.93 0.45 0.71 16 18 N -0.91 -55.64 13.96 21.66 0.30 -55.34 16 19 Si 0.96 42.16 24.96 68.60 1.71 43.87 16 20 H -0.24 -8.89 6.69 99.48 0.67 -8.22 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 23 C -0.13 -2.83 9.70 22.27 0.22 -2.62 16 24 C -0.13 -2.59 9.70 22.27 0.22 -2.38 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 31 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 32 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 35 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 36 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 37 H 0.04 1.53 8.10 -2.39 -0.02 1.51 16 38 H 0.11 2.74 7.41 -2.39 -0.02 2.72 16 39 H 0.11 2.74 8.11 -2.39 -0.02 2.72 16 40 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.05 2.03 3.42 -2.39 -0.01 2.03 16 42 H 0.10 2.66 6.64 -2.39 -0.02 2.65 16 43 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 45 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -78.54 365.14 6.33 -72.21 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.90 Total: 19.87 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 5.17 Total: -18.73 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -1.40 Total: -81.03 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.05 Total: -36.20 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.71 Total: 43.87 kcal Total: -78.54 6.33 -72.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592757745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.092 kcal (2) G-P(sol) polarization free energy of solvation -78.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds