Wall clock time and date at job start Tue Mar 31 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46742 * 2 1 4 4 C 1.38231 * 120.00072 * 90.00102 * 3 2 1 5 5 C 1.38234 * 119.99996 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99845 * 0.03030 * 5 4 3 7 7 C 1.50703 * 119.99775 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46877 * 89.99623 * 7 6 5 9 9 C 1.46499 * 119.99936 * 90.00092 * 8 7 6 10 10 C 1.53001 * 109.47147 * 89.99619 * 9 8 7 11 11 C 1.53001 * 109.47280 * 175.00223 * 10 9 8 12 12 C 1.52997 * 109.47303 * 294.99981 * 10 9 8 13 13 C 1.34773 * 119.99969 * 269.72057 * 8 7 6 14 14 O 1.21689 * 120.00158 * 0.02562 * 13 8 7 15 15 C 1.46376 * 120.00038 * 179.97438 * 13 8 7 16 16 H 1.08004 * 119.99999 * 0.02562 * 15 13 8 17 17 C 1.40047 * 120.00289 * 180.02562 * 15 13 8 18 18 N 1.30676 * 119.99832 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99995 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47347 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46833 * 120.00335 * 19 17 15 22 22 H 1.48497 * 109.46998 * 239.99685 * 19 17 15 23 23 C 1.38225 * 120.00215 * 0.24530 * 6 5 4 24 24 C 1.38237 * 119.99631 * 270.02197 * 3 2 1 25 25 H 1.08999 * 109.47115 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47292 * 299.99788 * 1 2 3 27 27 H 1.09000 * 109.47156 * 60.00177 * 1 2 3 28 28 H 1.08997 * 109.46714 * 239.99720 * 2 1 3 29 29 H 1.09000 * 109.47156 * 119.99823 * 2 1 3 30 30 H 1.08003 * 119.99968 * 0.02562 * 4 3 2 31 31 H 1.08003 * 120.00112 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.46978 * 330.00251 * 7 6 5 33 33 H 1.09000 * 109.46976 * 209.99496 * 7 6 5 34 34 H 1.08994 * 109.47173 * 210.00167 * 9 8 7 35 35 H 1.09005 * 109.47077 * 330.00338 * 9 8 7 36 36 H 1.09000 * 109.46788 * 55.00117 * 10 9 8 37 37 H 1.09005 * 109.47204 * 59.99728 * 11 10 9 38 38 H 1.08992 * 109.47440 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.46720 * 300.00269 * 11 10 9 40 40 H 1.09007 * 109.46898 * 59.99914 * 12 10 9 41 41 H 1.09000 * 109.47420 * 179.97438 * 12 10 9 42 42 H 1.08993 * 109.47332 * 300.00189 * 12 10 9 43 43 H 0.97000 * 119.99487 * 179.97438 * 18 17 15 44 44 H 1.07997 * 120.00315 * 179.73420 * 23 6 5 45 45 H 1.08000 * 120.00414 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3756 1.1971 6 6 2.9541 4.0273 -0.0001 7 6 3.4563 5.4482 -0.0001 8 7 4.9214 5.4482 -0.0002 9 6 5.6538 5.4483 -1.2689 10 6 5.9087 6.8908 -1.7106 11 6 6.7799 6.8927 -2.9684 12 6 4.5741 7.5747 -2.0137 13 6 5.5953 5.4539 1.1670 14 8 4.9869 5.4586 2.2208 15 6 7.0591 5.4534 1.1669 16 1 7.5991 5.4488 0.2316 17 6 7.7594 5.4588 2.3797 18 7 7.1060 5.4637 3.5114 19 14 9.6274 5.4588 2.3796 20 1 10.1223 5.4532 0.9795 21 1 10.1223 6.6744 3.0743 22 1 10.1224 4.2495 3.0850 23 6 2.7183 3.3776 -1.1972 24 6 2.2622 2.0726 -1.1972 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0831 1.5632 2.1324 31 1 2.9035 3.8849 2.1324 32 1 3.0931 5.9619 0.8899 33 1 3.0930 5.9620 -0.8901 34 1 6.6062 4.9345 -1.1387 35 1 5.0647 4.9345 -2.0286 36 1 6.4204 7.4298 -0.9133 37 1 6.2682 6.3536 -3.7657 38 1 6.9619 7.9203 -3.2828 39 1 7.7307 6.4054 -2.7524 40 1 3.9534 7.5734 -1.1176 41 1 4.7556 8.6026 -2.3280 42 1 4.0624 7.0357 -2.8109 43 1 7.5911 5.4671 4.3514 44 1 2.8941 3.8882 -2.1325 45 1 2.0815 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592824989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:57 Heat of formation + Delta-G solvation = -36.663362 kcal Electronic energy + Delta-G solvation = -23502.338387 eV Core-core repulsion = 20290.737156 eV Total energy + Delta-G solvation = -3211.601230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.27497 -37.88850 -35.47501 -34.38598 -32.72855 -32.09871 -30.45522 -29.86287 -27.23556 -26.48272 -25.67339 -24.37924 -22.62957 -22.23460 -20.38761 -19.84954 -18.90398 -16.49268 -15.91848 -15.64555 -15.13672 -14.94044 -14.92392 -14.17062 -13.97458 -13.69300 -13.50532 -13.44162 -12.91733 -12.77274 -12.66265 -12.25986 -12.14532 -11.86410 -11.67710 -11.53539 -11.34597 -11.27866 -11.10785 -11.03996 -10.92934 -10.64216 -10.53623 -10.46582 -10.30956 -10.18799 -10.10829 -9.87237 -8.83875 -8.44243 -8.18946 -7.49948 -7.18318 -6.17042 -4.60886 1.76810 1.88769 3.12793 3.21646 3.25271 4.05311 4.19523 4.57875 4.76102 4.93814 5.02109 5.32464 5.37402 5.39285 5.41640 5.43682 5.49865 5.59585 5.64003 5.73154 5.84746 5.87566 5.93045 5.96153 5.99416 6.04333 6.16420 6.16620 6.18013 6.23299 6.32634 6.36232 6.52694 6.56119 6.56812 6.63268 6.76362 6.87632 6.94916 7.02393 7.21766 7.47337 7.49829 7.69587 8.17647 8.39053 9.05393 9.46589 10.60355 10.79748 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.005185 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.060404 B = 5398.939882 C = 6677.378668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.095 4.095 4 C -0.123 4.123 5 C -0.086 4.086 6 C -0.089 4.089 7 C 0.158 3.842 8 N -0.633 5.633 9 C 0.136 3.864 10 C -0.117 4.117 11 C -0.141 4.141 12 C -0.143 4.143 13 C 0.560 3.440 14 O -0.575 6.575 15 C -0.540 4.540 16 H 0.072 0.928 17 C 0.089 3.911 18 N -0.767 5.767 19 Si 0.901 3.099 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.112 4.112 24 C -0.127 4.127 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.266 0.734 44 H 0.113 0.887 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.455 -4.404 -10.712 13.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.095 4.095 4 C -0.141 4.141 5 C -0.105 4.105 6 C -0.091 4.091 7 C 0.034 3.966 8 N -0.369 5.369 9 C 0.012 3.988 10 C -0.137 4.137 11 C -0.199 4.199 12 C -0.200 4.200 13 C 0.366 3.634 14 O -0.458 6.458 15 C -0.576 4.576 16 H 0.090 0.910 17 C -0.131 4.131 18 N -0.396 5.396 19 Si 0.726 3.274 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.131 4.131 24 C -0.146 4.146 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.149 0.851 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.131 0.869 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.779 -4.387 -9.907 13.339 hybrid contribution 1.089 -0.027 -0.089 1.093 sum -6.690 -4.414 -9.997 12.813 Atomic orbital electron populations 1.21738 0.95150 1.01162 1.02138 1.20485 0.95816 0.93253 1.02358 1.19756 1.00537 0.95823 0.93396 1.20996 1.00819 0.95192 0.97059 1.21295 0.96033 0.94302 0.98837 1.20576 0.97319 0.98370 0.92808 1.20103 0.83772 0.90952 1.01813 1.48059 1.02740 1.79588 1.06493 1.21219 0.97256 0.94440 0.85933 1.21602 0.95909 0.98552 0.97654 1.21759 0.99785 1.00938 0.97455 1.21882 0.97793 0.99306 1.01051 1.18218 0.88318 0.76066 0.80823 1.90574 1.69974 1.54999 1.30210 1.21027 0.89768 1.53740 0.93101 0.91033 1.25706 0.99539 0.92670 0.95178 1.70029 1.36167 1.35615 0.97803 0.86414 0.83689 0.78183 0.79104 1.18743 1.20223 1.20245 1.20952 1.00005 0.94743 0.97372 1.20837 1.01752 0.95047 0.96917 0.92836 0.92602 0.92718 0.91508 0.91380 0.86803 0.85149 0.90343 0.91660 0.90404 0.93403 0.90108 0.93358 0.93304 0.92689 0.92162 0.93719 0.93628 0.92307 0.86861 0.86998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.90 37.16 0.37 -1.09 16 2 C -0.08 -0.95 6.06 -27.88 -0.17 -1.12 16 3 C -0.09 -1.41 5.13 -104.62 -0.54 -1.95 16 4 C -0.12 -2.07 9.70 -39.59 -0.38 -2.45 16 5 C -0.09 -1.68 9.70 -39.58 -0.38 -2.07 16 6 C -0.09 -1.65 5.46 -104.62 -0.57 -2.23 16 7 C 0.16 3.05 4.61 -5.19 -0.02 3.02 16 8 N -0.63 -13.84 2.28 -176.72 -0.40 -14.24 16 9 C 0.14 2.50 4.61 -4.04 -0.02 2.49 16 10 C -0.12 -1.92 3.13 -90.62 -0.28 -2.20 16 11 C -0.14 -1.90 9.19 37.16 0.34 -1.56 16 12 C -0.14 -2.08 8.18 37.16 0.30 -1.78 16 13 C 0.56 15.37 7.61 -12.99 -0.10 15.27 16 14 O -0.58 -17.79 14.14 5.20 0.07 -17.72 16 15 C -0.54 -14.83 8.74 -35.63 -0.31 -15.14 16 16 H 0.07 1.82 5.99 -52.48 -0.31 1.51 16 17 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 18 N -0.77 -22.68 11.83 55.55 0.66 -22.03 16 19 Si 0.90 20.06 29.56 -169.99 -5.02 15.04 16 20 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 C -0.11 -1.79 9.70 -39.58 -0.38 -2.17 16 24 C -0.13 -1.87 9.70 -39.58 -0.38 -2.26 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.13 2.86 7.60 -52.48 -0.40 2.46 16 32 H 0.08 1.68 7.35 -51.93 -0.38 1.30 16 33 H 0.07 1.07 5.92 -51.93 -0.31 0.76 16 34 H 0.08 1.55 6.10 -51.93 -0.32 1.23 16 35 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.96 5.89 -51.92 -0.31 0.66 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.27 7.18 8.29 -40.82 -0.34 6.85 16 44 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -32.02 364.91 -9.32 -41.34 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.49 Total: 4.99 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -2.63 Total: -12.88 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.25 Total: -36.27 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.07 Total: -17.72 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.02 -9.32 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592824989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.677 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds