Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46742 * 2 1 4 4 C 1.38231 * 120.00072 * 90.00102 * 3 2 1 5 5 C 1.38234 * 119.99996 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99845 * 0.03030 * 5 4 3 7 7 C 1.50703 * 119.99775 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46877 * 89.99623 * 7 6 5 9 9 C 1.46499 * 119.99936 * 90.00092 * 8 7 6 10 10 C 1.53001 * 109.47147 * 89.99619 * 9 8 7 11 11 C 1.53001 * 109.47280 * 175.00223 * 10 9 8 12 12 C 1.52997 * 109.47303 * 294.99981 * 10 9 8 13 13 C 1.34773 * 119.99969 * 269.72057 * 8 7 6 14 14 O 1.21689 * 120.00158 * 0.02562 * 13 8 7 15 15 C 1.46376 * 120.00038 * 179.97438 * 13 8 7 16 16 H 1.08004 * 119.99999 * 0.02562 * 15 13 8 17 17 C 1.40047 * 120.00289 * 180.02562 * 15 13 8 18 18 N 1.30676 * 119.99832 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99995 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47347 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46833 * 120.00335 * 19 17 15 22 22 H 1.48497 * 109.46998 * 239.99685 * 19 17 15 23 23 C 1.38225 * 120.00215 * 0.24530 * 6 5 4 24 24 C 1.38237 * 119.99631 * 270.02197 * 3 2 1 25 25 H 1.08999 * 109.47115 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47292 * 299.99788 * 1 2 3 27 27 H 1.09000 * 109.47156 * 60.00177 * 1 2 3 28 28 H 1.08997 * 109.46714 * 239.99720 * 2 1 3 29 29 H 1.09000 * 109.47156 * 119.99823 * 2 1 3 30 30 H 1.08003 * 119.99968 * 0.02562 * 4 3 2 31 31 H 1.08003 * 120.00112 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.46978 * 330.00251 * 7 6 5 33 33 H 1.09000 * 109.46976 * 209.99496 * 7 6 5 34 34 H 1.08994 * 109.47173 * 210.00167 * 9 8 7 35 35 H 1.09005 * 109.47077 * 330.00338 * 9 8 7 36 36 H 1.09000 * 109.46788 * 55.00117 * 10 9 8 37 37 H 1.09005 * 109.47204 * 59.99728 * 11 10 9 38 38 H 1.08992 * 109.47440 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.46720 * 300.00269 * 11 10 9 40 40 H 1.09007 * 109.46898 * 59.99914 * 12 10 9 41 41 H 1.09000 * 109.47420 * 179.97438 * 12 10 9 42 42 H 1.08993 * 109.47332 * 300.00189 * 12 10 9 43 43 H 0.97000 * 119.99487 * 179.97438 * 18 17 15 44 44 H 1.07997 * 120.00315 * 179.73420 * 23 6 5 45 45 H 1.08000 * 120.00414 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3756 1.1971 6 6 2.9541 4.0273 -0.0001 7 6 3.4563 5.4482 -0.0001 8 7 4.9214 5.4482 -0.0002 9 6 5.6538 5.4483 -1.2689 10 6 5.9087 6.8908 -1.7106 11 6 6.7799 6.8927 -2.9684 12 6 4.5741 7.5747 -2.0137 13 6 5.5953 5.4539 1.1670 14 8 4.9869 5.4586 2.2208 15 6 7.0591 5.4534 1.1669 16 1 7.5991 5.4488 0.2316 17 6 7.7594 5.4588 2.3797 18 7 7.1060 5.4637 3.5114 19 14 9.6274 5.4588 2.3796 20 1 10.1223 5.4532 0.9795 21 1 10.1223 6.6744 3.0743 22 1 10.1224 4.2495 3.0850 23 6 2.7183 3.3776 -1.1972 24 6 2.2622 2.0726 -1.1972 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0831 1.5632 2.1324 31 1 2.9035 3.8849 2.1324 32 1 3.0931 5.9619 0.8899 33 1 3.0930 5.9620 -0.8901 34 1 6.6062 4.9345 -1.1387 35 1 5.0647 4.9345 -2.0286 36 1 6.4204 7.4298 -0.9133 37 1 6.2682 6.3536 -3.7657 38 1 6.9619 7.9203 -3.2828 39 1 7.7307 6.4054 -2.7524 40 1 3.9534 7.5734 -1.1176 41 1 4.7556 8.6026 -2.3280 42 1 4.0624 7.0357 -2.8109 43 1 7.5911 5.4671 4.3514 44 1 2.8941 3.8882 -2.1325 45 1 2.0815 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592824989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = -53.592656 kcal Electronic energy + Delta-G solvation = -23503.072496 eV Core-core repulsion = 20290.737156 eV Total energy + Delta-G solvation = -3212.335340 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.70684 -39.52899 -37.20990 -35.62904 -34.61928 -33.78285 -31.76651 -31.21458 -28.77754 -27.86132 -27.23836 -25.89029 -23.87863 -23.53616 -21.81241 -21.18832 -20.63627 -18.37800 -17.67882 -17.15520 -16.64432 -16.41267 -16.20579 -15.84949 -15.42124 -15.10441 -14.57131 -14.50861 -14.43619 -14.18264 -14.10658 -13.70532 -13.52782 -13.19607 -13.00669 -12.91495 -12.85665 -12.80578 -12.65488 -12.49987 -12.19142 -12.10162 -11.96389 -11.86276 -11.72038 -11.60828 -11.46898 -11.39200 -10.92331 -9.81530 -9.76468 -9.35546 -8.98232 -8.24901 -6.78061 0.45278 0.55853 1.36798 1.37209 1.53990 2.23407 2.50505 2.73195 3.17884 3.65557 3.89173 3.91187 4.07098 4.13956 4.17148 4.20648 4.27669 4.36407 4.48118 4.53759 4.61531 4.67623 4.73385 4.79763 4.83159 4.86205 4.91918 5.03487 5.08957 5.10155 5.12685 5.17190 5.22553 5.25378 5.36019 5.39206 5.40726 5.54775 5.56622 5.60070 5.75518 5.77881 5.93035 6.18758 6.21345 6.47996 6.92297 7.50064 8.54099 8.73281 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.005185 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.060404 B = 5398.939882 C = 6677.378668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.118 4.118 6 C -0.111 4.111 7 C 0.163 3.837 8 N -0.630 5.630 9 C 0.134 3.866 10 C -0.114 4.114 11 C -0.134 4.134 12 C -0.139 4.139 13 C 0.545 3.455 14 O -0.625 6.625 15 C -0.562 4.562 16 H 0.087 0.913 17 C 0.030 3.970 18 N -0.823 5.823 19 Si 0.986 3.014 20 H -0.246 1.246 21 H -0.270 1.270 22 H -0.271 1.271 23 C -0.107 4.107 24 C -0.121 4.121 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.036 0.964 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.270 0.730 44 H 0.143 0.857 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 -5.838 -14.833 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C -0.089 4.089 4 C -0.153 4.153 5 C -0.137 4.137 6 C -0.112 4.112 7 C 0.040 3.960 8 N -0.364 5.364 9 C 0.010 3.990 10 C -0.134 4.134 11 C -0.192 4.192 12 C -0.196 4.196 13 C 0.350 3.650 14 O -0.512 6.512 15 C -0.599 4.599 16 H 0.105 0.895 17 C -0.184 4.184 18 N -0.453 5.453 19 Si 0.806 3.194 20 H -0.168 1.168 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.125 4.125 24 C -0.139 4.139 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.137 0.863 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.161 0.839 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.463 -5.818 -14.092 16.974 hybrid contribution 0.868 0.380 1.149 1.489 sum -6.595 -5.438 -12.943 15.511 Atomic orbital electron populations 1.21716 0.93784 1.02496 1.01872 1.20570 0.96873 0.90891 1.03466 1.20176 0.98805 0.97380 0.92543 1.21121 1.01130 0.94250 0.98751 1.21118 0.98938 0.95881 0.97761 1.20503 0.99084 0.97930 0.93702 1.20128 0.82207 0.92098 1.01571 1.47847 1.03942 1.78235 1.06381 1.21424 0.96534 0.96209 0.84791 1.21509 0.97304 0.96543 0.98011 1.21696 0.99013 1.02237 0.96217 1.21836 0.96407 1.00475 1.00867 1.18546 0.88989 0.75739 0.81713 1.90535 1.70982 1.57034 1.32626 1.21491 0.90354 1.53903 0.94118 0.89470 1.26893 1.05667 0.91470 0.94382 1.70212 1.38934 1.37279 0.98841 0.85143 0.75893 0.78391 0.79999 1.16842 1.19494 1.19627 1.21222 0.98924 0.95366 0.96996 1.21298 0.99848 0.94470 0.98267 0.90735 0.93674 0.92234 0.89426 0.91306 0.86287 0.89729 0.94158 0.88132 0.92179 0.90181 0.94064 0.90969 0.91931 0.93208 0.94478 0.92270 0.90891 0.91980 0.83902 0.83083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.90 71.98 0.71 -1.72 16 2 C -0.08 -1.64 6.06 29.85 0.18 -1.46 16 3 C -0.09 -2.48 5.13 -19.87 -0.10 -2.58 16 4 C -0.13 -4.68 9.70 22.27 0.22 -4.47 16 5 C -0.12 -4.98 9.70 22.27 0.22 -4.76 16 6 C -0.11 -4.21 5.46 -19.87 -0.11 -4.32 16 7 C 0.16 6.58 4.61 85.63 0.39 6.98 16 8 N -0.63 -28.52 2.28 -831.24 -1.90 -30.42 16 9 C 0.13 4.80 4.61 86.38 0.40 5.20 16 10 C -0.11 -3.58 3.13 -10.79 -0.03 -3.61 16 11 C -0.13 -3.19 9.19 71.98 0.66 -2.53 16 12 C -0.14 -3.74 8.18 71.98 0.59 -3.15 16 13 C 0.54 31.76 7.61 86.36 0.66 32.42 16 14 O -0.63 -42.00 14.14 -4.31 -0.06 -42.06 16 15 C -0.56 -32.10 8.74 24.83 0.22 -31.88 16 16 H 0.09 4.53 5.99 -2.91 -0.02 4.51 16 17 C 0.03 1.73 5.50 85.30 0.47 2.20 16 18 N -0.82 -51.36 11.83 21.84 0.26 -51.10 16 19 Si 0.99 42.00 29.56 68.60 2.03 44.03 16 20 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 C -0.11 -3.14 9.70 22.27 0.22 -2.93 16 24 C -0.12 -3.14 9.70 22.27 0.22 -2.92 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 29 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 30 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 31 H 0.08 4.25 7.60 -2.91 -0.02 4.23 16 32 H 0.04 1.90 7.35 -2.39 -0.02 1.88 16 33 H 0.10 3.24 5.92 -2.39 -0.01 3.23 16 34 H 0.06 2.36 6.10 -2.39 -0.01 2.35 16 35 H 0.08 2.35 8.07 -2.38 -0.02 2.33 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.04 1.16 5.89 -2.38 -0.01 1.15 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.27 15.38 8.29 -92.71 -0.77 14.62 16 44 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 45 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -76.88 364.91 6.18 -70.70 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.95 Total: 28.39 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 4.90 Total: -19.54 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -1.64 Total: -81.52 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -0.06 Total: -42.06 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -76.88 6.18 -70.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592824989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.109 kcal (2) G-P(sol) polarization free energy of solvation -76.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds