Wall clock time and date at job start Tue Mar 31 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 116.99713 * 2 1 4 4 C 1.38751 * 120.05926 * 359.97438 * 3 2 1 5 5 C 1.38129 * 119.94578 * 179.97438 * 4 3 2 6 6 C 1.38221 * 120.10247 * 0.03995 * 5 4 3 7 7 C 1.38488 * 120.05792 * 359.96089 * 6 5 4 8 8 C 1.38092 * 120.02182 * 0.02562 * 7 6 5 9 9 C 1.51195 * 108.25224 * 179.97438 * 7 6 5 10 10 N 1.48045 * 105.67303 * 17.51670 * 9 7 6 11 11 C 1.46905 * 110.99496 * 213.01278 * 10 9 7 12 12 C 1.53002 * 109.46611 * 193.18754 * 11 10 9 13 13 C 1.53009 * 109.46869 * 174.66396 * 12 11 10 14 14 C 1.53002 * 109.47337 * 294.66379 * 12 11 10 15 15 C 1.53001 * 109.47197 * 54.66523 * 12 11 10 16 16 C 1.50698 * 109.47123 * 179.97438 * 15 12 11 17 17 H 1.08007 * 120.00273 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00482 * 179.97438 * 16 15 12 19 19 N 1.31518 * 119.99369 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00613 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47004 * 89.99951 * 20 18 16 22 22 H 1.48497 * 109.47101 * 210.00133 * 20 18 16 23 23 H 1.48503 * 109.46461 * 330.00014 * 20 18 16 24 24 C 1.48050 * 103.89451 * 332.37447 * 10 9 7 25 25 H 1.09002 * 109.47634 * 59.99909 * 1 2 3 26 26 H 1.09007 * 109.47014 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47359 * 299.99191 * 1 2 3 28 28 H 1.07997 * 120.02955 * 0.03244 * 4 3 2 29 29 H 1.07998 * 119.94232 * 180.02562 * 5 4 3 30 30 H 1.08009 * 120.00658 * 179.97438 * 8 7 6 31 31 H 1.09003 * 110.20338 * 258.46459 * 9 7 6 32 32 H 1.09000 * 110.20718 * 136.56920 * 9 7 6 33 33 H 1.08994 * 109.47532 * 73.19085 * 11 10 9 34 34 H 1.08996 * 109.47262 * 313.18545 * 11 10 9 35 35 H 1.08996 * 109.47034 * 57.50975 * 13 12 11 36 36 H 1.09000 * 109.46812 * 177.51161 * 13 12 11 37 37 H 1.08999 * 109.46768 * 297.50979 * 13 12 11 38 38 H 1.08996 * 109.47060 * 73.41715 * 14 12 11 39 39 H 1.08998 * 109.47056 * 193.42498 * 14 12 11 40 40 H 1.09004 * 109.46646 * 313.41962 * 14 12 11 41 41 H 1.08999 * 109.46713 * 299.99556 * 15 12 11 42 42 H 1.09001 * 109.47196 * 60.00120 * 15 12 11 43 43 H 0.96996 * 119.99616 * 180.02562 * 19 18 16 44 44 H 1.09000 * 110.20381 * 146.67816 * 24 10 9 45 45 H 1.09003 * 110.20505 * 268.57510 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3012 3.6770 0.0002 7 6 4.0564 2.5162 0.0008 8 6 3.4310 1.2850 0.0005 9 6 5.5182 2.9024 0.0003 10 7 5.5578 4.3190 0.4285 11 6 6.6606 5.0360 -0.2257 12 6 6.8789 6.3805 0.4710 13 6 8.1101 7.0684 -0.1224 14 6 5.6497 7.2678 0.2641 15 6 7.0954 6.1501 1.9680 16 6 7.3110 7.4744 2.6541 17 1 7.2957 8.3890 2.0798 18 6 7.5279 7.5186 4.0150 19 7 7.5471 6.4048 4.7142 20 14 7.7945 9.1601 4.8656 21 1 6.4864 9.7071 5.3071 22 1 8.6749 8.9687 6.0460 23 1 8.4343 10.1095 3.9197 24 6 4.2469 4.8568 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 0.2128 2.3204 -0.0004 29 1 1.3335 4.5111 0.0000 30 1 4.0203 0.3798 0.0005 31 1 5.9342 2.8001 -1.0021 32 1 6.0721 2.2807 0.7037 33 1 6.4127 5.2057 -1.2734 34 1 7.5710 4.4404 -0.1596 35 1 7.9744 7.1927 -1.1967 36 1 8.2400 8.0455 0.3429 37 1 8.9930 6.4570 0.0640 38 1 4.8301 6.9032 0.8833 39 1 5.8899 8.2929 0.5459 40 1 5.3534 7.2392 -0.7845 41 1 6.2182 5.6601 2.3906 42 1 7.9711 5.5181 2.1154 43 1 7.6993 6.4359 5.6717 44 1 3.9030 5.6155 0.7024 45 1 4.3226 5.2780 -1.0030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594616053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:58 Heat of formation + Delta-G solvation = -2.982671 kcal Electronic energy + Delta-G solvation = -23212.081825 eV Core-core repulsion = 20001.941099 eV Total energy + Delta-G solvation = -3210.140726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.62692 -39.14036 -37.14185 -34.91623 -32.26128 -31.49592 -30.14135 -28.38552 -27.07725 -26.86812 -26.05411 -25.61103 -23.02021 -22.21884 -21.03487 -20.95986 -18.04771 -17.60641 -16.48952 -16.10825 -15.91602 -15.78810 -15.08050 -14.90336 -14.39100 -13.83536 -13.63263 -13.49918 -13.28933 -13.04323 -12.89479 -12.50238 -12.29783 -12.16255 -11.99551 -11.85859 -11.57299 -11.30979 -11.05489 -10.91327 -10.81282 -10.71937 -10.68094 -10.31129 -10.19419 -10.06156 -9.58646 -9.01382 -8.83607 -8.69664 -8.31606 -8.16043 -7.74039 -5.83461 -3.83260 1.29513 1.41311 3.08507 3.38949 3.45617 3.47752 3.70110 4.31235 4.53724 4.57570 4.70324 4.77453 4.91968 4.93598 5.14369 5.22534 5.33015 5.45065 5.51174 5.55490 5.61441 5.70535 5.74360 5.87983 5.97149 6.01181 6.04487 6.14667 6.25630 6.27037 6.33548 6.40652 6.49333 6.62840 6.67127 6.76684 6.81157 7.07455 7.16602 7.24338 7.30277 7.35775 7.54462 7.90799 8.11248 8.28113 8.62689 9.24434 9.78324 11.27605 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022419 B = 0.003552 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.649414 B = 7881.428014 C = 8352.419632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.122 3.878 4 C -0.208 4.208 5 C -0.063 4.063 6 C -0.131 4.131 7 C -0.059 4.059 8 C -0.133 4.133 9 C 0.073 3.927 10 N -0.483 5.483 11 C 0.058 3.942 12 C -0.057 4.057 13 C -0.127 4.127 14 C -0.131 4.131 15 C 0.045 3.955 16 C -0.509 4.509 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.894 5.894 20 Si 0.882 3.118 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.276 1.276 24 C 0.077 3.923 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.026 0.974 34 H 0.070 0.930 35 H 0.027 0.973 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.024 0.976 41 H 0.034 0.966 42 H 0.008 0.992 43 H 0.257 0.743 44 H 0.101 0.899 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.049 -9.633 -12.852 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.227 4.227 5 C -0.082 4.082 6 C -0.132 4.132 7 C -0.059 4.059 8 C -0.152 4.152 9 C -0.054 4.054 10 N -0.205 5.205 11 C -0.069 4.069 12 C -0.058 4.058 13 C -0.184 4.184 14 C -0.188 4.188 15 C 0.008 3.992 16 C -0.548 4.548 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.711 3.289 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.201 1.201 24 C -0.050 4.050 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.053 0.947 42 H 0.027 0.973 43 H 0.066 0.934 44 H 0.118 0.882 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.819 -9.820 -12.098 19.557 hybrid contribution -0.236 0.932 -0.226 0.988 sum -12.054 -8.888 -12.324 19.395 Atomic orbital electron populations 1.23027 0.78557 1.03720 1.01339 1.86042 1.21215 1.26985 1.89025 1.18767 0.91969 0.84051 0.97488 1.21071 0.99717 0.92060 1.09834 1.20242 0.92920 0.97143 0.97858 1.20734 0.93729 0.96188 1.02558 1.20405 0.96307 0.92502 0.96722 1.19580 0.91134 0.97461 1.07058 1.21697 0.91686 0.92179 0.99844 1.65299 1.01719 1.00226 1.53282 1.22557 0.93355 0.96780 0.94248 1.20599 0.94222 0.91073 0.99887 1.21742 0.97573 1.01673 0.97447 1.22007 0.98403 1.00473 0.97897 1.19030 0.97543 0.96029 0.86608 1.21345 1.47605 0.93399 0.92410 0.92812 1.24988 0.96090 0.95643 0.97758 1.69985 1.50674 1.25971 1.06774 0.86759 0.77917 0.84949 0.79311 1.20939 1.21495 1.20124 1.21961 0.88262 0.94936 0.99856 0.92783 0.88402 0.92629 0.85452 0.85742 0.85311 0.92384 0.88867 0.95594 0.91119 0.95379 0.91667 0.93560 0.92164 0.92682 0.95678 0.94722 0.97313 0.93358 0.88159 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.72 10.50 -19.43 -0.20 -3.93 16 3 C 0.12 1.57 6.69 -39.22 -0.26 1.31 16 4 C -0.21 -2.46 9.04 -39.43 -0.36 -2.82 16 5 C -0.06 -0.81 10.04 -39.63 -0.40 -1.20 16 6 C -0.13 -1.94 6.26 -104.29 -0.65 -2.59 16 7 C -0.06 -0.86 6.26 -104.34 -0.65 -1.51 16 8 C -0.13 -1.81 9.98 -39.46 -0.39 -2.21 16 9 C 0.07 1.09 6.55 -4.10 -0.03 1.06 16 10 N -0.48 -8.39 4.42 -234.90 -1.04 -9.42 16 11 C 0.06 1.00 3.87 -3.82 -0.01 0.99 16 12 C -0.06 -1.14 0.61 -154.50 -0.09 -1.23 16 13 C -0.13 -2.36 8.14 37.16 0.30 -2.06 16 14 C -0.13 -2.43 6.72 37.16 0.25 -2.18 16 15 C 0.04 1.14 3.78 -27.88 -0.11 1.03 16 16 C -0.51 -14.05 7.80 -34.44 -0.27 -14.32 16 17 H 0.05 1.44 5.77 -52.48 -0.30 1.14 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 20 Si 0.88 21.88 29.54 -169.99 -5.02 16.86 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.08 1.21 4.88 -4.09 -0.02 1.19 16 25 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 26 H 0.10 0.51 8.14 -51.92 -0.42 0.08 16 27 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 28 H 0.13 1.16 6.30 -52.49 -0.33 0.83 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 31 H 0.06 0.77 7.81 -51.93 -0.41 0.36 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.03 0.40 7.52 -51.93 -0.39 0.01 16 34 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 1.31 6.68 -51.93 -0.35 0.96 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.15 5.31 -51.93 -0.28 0.88 16 39 H 0.05 1.07 7.04 -51.93 -0.37 0.71 16 40 H 0.02 0.39 7.55 -51.93 -0.39 0.00 16 41 H 0.03 0.96 7.46 -51.93 -0.39 0.58 16 42 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.10 1.68 5.88 -51.93 -0.31 1.37 16 45 H 0.06 0.81 6.95 -51.93 -0.36 0.45 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -31.51 347.73 -9.26 -40.77 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.17 Total: -1.18 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -1.80 Total: -21.84 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.30 Total: -35.92 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.20 Total: -3.93 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.51 -9.26 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594616053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.786 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds