Wall clock time and date at job start Tue Mar 31 2020 06:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 116.99713 * 2 1 4 4 C 1.38751 * 120.05926 * 359.97438 * 3 2 1 5 5 C 1.38129 * 119.94578 * 179.97438 * 4 3 2 6 6 C 1.38221 * 120.10247 * 0.03995 * 5 4 3 7 7 C 1.38488 * 120.05792 * 359.96089 * 6 5 4 8 8 C 1.38092 * 120.02182 * 0.02562 * 7 6 5 9 9 C 1.51195 * 108.25224 * 179.97438 * 7 6 5 10 10 N 1.48045 * 105.67303 * 17.51670 * 9 7 6 11 11 C 1.46905 * 110.99496 * 213.01278 * 10 9 7 12 12 C 1.53002 * 109.46611 * 193.18754 * 11 10 9 13 13 C 1.53009 * 109.46869 * 174.66396 * 12 11 10 14 14 C 1.53002 * 109.47337 * 294.66379 * 12 11 10 15 15 C 1.53001 * 109.47197 * 54.66523 * 12 11 10 16 16 C 1.50698 * 109.47123 * 179.97438 * 15 12 11 17 17 H 1.08007 * 120.00273 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00482 * 179.97438 * 16 15 12 19 19 N 1.31518 * 119.99369 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00613 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47004 * 89.99951 * 20 18 16 22 22 H 1.48497 * 109.47101 * 210.00133 * 20 18 16 23 23 H 1.48503 * 109.46461 * 330.00014 * 20 18 16 24 24 C 1.48050 * 103.89451 * 332.37447 * 10 9 7 25 25 H 1.09002 * 109.47634 * 59.99909 * 1 2 3 26 26 H 1.09007 * 109.47014 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47359 * 299.99191 * 1 2 3 28 28 H 1.07997 * 120.02955 * 0.03244 * 4 3 2 29 29 H 1.07998 * 119.94232 * 180.02562 * 5 4 3 30 30 H 1.08009 * 120.00658 * 179.97438 * 8 7 6 31 31 H 1.09003 * 110.20338 * 258.46459 * 9 7 6 32 32 H 1.09000 * 110.20718 * 136.56920 * 9 7 6 33 33 H 1.08994 * 109.47532 * 73.19085 * 11 10 9 34 34 H 1.08996 * 109.47262 * 313.18545 * 11 10 9 35 35 H 1.08996 * 109.47034 * 57.50975 * 13 12 11 36 36 H 1.09000 * 109.46812 * 177.51161 * 13 12 11 37 37 H 1.08999 * 109.46768 * 297.50979 * 13 12 11 38 38 H 1.08996 * 109.47060 * 73.41715 * 14 12 11 39 39 H 1.08998 * 109.47056 * 193.42498 * 14 12 11 40 40 H 1.09004 * 109.46646 * 313.41962 * 14 12 11 41 41 H 1.08999 * 109.46713 * 299.99556 * 15 12 11 42 42 H 1.09001 * 109.47196 * 60.00120 * 15 12 11 43 43 H 0.96996 * 119.99616 * 180.02562 * 19 18 16 44 44 H 1.09000 * 110.20381 * 146.67816 * 24 10 9 45 45 H 1.09003 * 110.20505 * 268.57510 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3012 3.6770 0.0002 7 6 4.0564 2.5162 0.0008 8 6 3.4310 1.2850 0.0005 9 6 5.5182 2.9024 0.0003 10 7 5.5578 4.3190 0.4285 11 6 6.6606 5.0360 -0.2257 12 6 6.8789 6.3805 0.4710 13 6 8.1101 7.0684 -0.1224 14 6 5.6497 7.2678 0.2641 15 6 7.0954 6.1501 1.9680 16 6 7.3110 7.4744 2.6541 17 1 7.2957 8.3890 2.0798 18 6 7.5279 7.5186 4.0150 19 7 7.5471 6.4048 4.7142 20 14 7.7945 9.1601 4.8656 21 1 6.4864 9.7071 5.3071 22 1 8.6749 8.9687 6.0460 23 1 8.4343 10.1095 3.9197 24 6 4.2469 4.8568 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 0.2128 2.3204 -0.0004 29 1 1.3335 4.5111 0.0000 30 1 4.0203 0.3798 0.0005 31 1 5.9342 2.8001 -1.0021 32 1 6.0721 2.2807 0.7037 33 1 6.4127 5.2057 -1.2734 34 1 7.5710 4.4404 -0.1596 35 1 7.9744 7.1927 -1.1967 36 1 8.2400 8.0455 0.3429 37 1 8.9930 6.4570 0.0640 38 1 4.8301 6.9032 0.8833 39 1 5.8899 8.2929 0.5459 40 1 5.3534 7.2392 -0.7845 41 1 6.2182 5.6601 2.3906 42 1 7.9711 5.5181 2.1154 43 1 7.6993 6.4359 5.6717 44 1 3.9030 5.6155 0.7024 45 1 4.3226 5.2780 -1.0030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594616053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:57 Heat of formation + Delta-G solvation = -21.509357 kcal Electronic energy + Delta-G solvation = -23212.885203 eV Core-core repulsion = 20001.941099 eV Total energy + Delta-G solvation = -3210.944103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66764 -40.19108 -38.45558 -36.23933 -34.33842 -32.51722 -31.31827 -29.41509 -29.00837 -28.01247 -27.26945 -26.84848 -24.91803 -23.50759 -22.18101 -21.94069 -19.56725 -18.61310 -18.26176 -17.43339 -16.90559 -16.68242 -16.54936 -16.29262 -15.85491 -15.18544 -14.89194 -14.67091 -14.53327 -14.31830 -14.03613 -13.90118 -13.80376 -13.56421 -13.25008 -13.08500 -12.76129 -12.69673 -12.63774 -12.49529 -12.35881 -12.15396 -12.05703 -11.82287 -11.75985 -11.56911 -11.23054 -10.72685 -10.67394 -10.41301 -9.92383 -9.41703 -8.85167 -8.05121 -6.11716 0.29642 0.40111 1.41825 1.42353 1.52519 2.29084 2.48108 2.69548 3.08536 3.28107 3.52954 3.61549 3.90934 4.10332 4.18235 4.23700 4.28857 4.39618 4.41652 4.42118 4.45357 4.56314 4.61395 4.66959 4.74662 4.81530 4.82542 4.85704 4.95655 4.99248 5.06013 5.20586 5.22078 5.27165 5.34864 5.54594 5.56622 5.60724 5.66540 5.72156 5.76248 5.97551 6.02089 6.11504 6.23266 6.43877 6.46863 7.07402 7.54624 9.06570 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022419 B = 0.003552 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.649414 B = 7881.428014 C = 8352.419632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.119 3.881 4 C -0.204 4.204 5 C -0.065 4.065 6 C -0.153 4.153 7 C -0.073 4.073 8 C -0.148 4.148 9 C 0.077 3.923 10 N -0.516 5.516 11 C 0.066 3.934 12 C -0.056 4.056 13 C -0.122 4.122 14 C -0.124 4.124 15 C 0.059 3.941 16 C -0.514 4.514 17 H 0.061 0.939 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.950 3.050 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.263 1.263 24 C 0.084 3.916 25 H 0.068 0.932 26 H 0.119 0.881 27 H 0.063 0.937 28 H 0.158 0.842 29 H 0.146 0.854 30 H 0.136 0.864 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.039 0.961 38 H 0.048 0.952 39 H 0.041 0.959 40 H 0.059 0.941 41 H 0.001 0.999 42 H -0.029 1.029 43 H 0.256 0.744 44 H 0.082 0.918 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.614 -9.075 -14.574 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.074 3.926 4 C -0.222 4.222 5 C -0.084 4.084 6 C -0.154 4.154 7 C -0.073 4.073 8 C -0.167 4.167 9 C -0.050 4.050 10 N -0.240 5.240 11 C -0.062 4.062 12 C -0.057 4.057 13 C -0.180 4.180 14 C -0.180 4.180 15 C 0.022 3.978 16 C -0.552 4.552 17 H 0.079 0.921 18 C -0.201 4.201 19 N -0.578 5.578 20 Si 0.776 3.224 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.187 1.187 24 C -0.043 4.043 25 H 0.086 0.914 26 H 0.138 0.862 27 H 0.081 0.919 28 H 0.175 0.825 29 H 0.163 0.837 30 H 0.153 0.847 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.019 0.981 42 H -0.010 1.010 43 H 0.065 0.935 44 H 0.100 0.900 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.395 -9.256 -13.839 21.368 hybrid contribution 0.166 0.653 0.311 0.743 sum -13.229 -8.603 -13.528 20.785 Atomic orbital electron populations 1.23366 0.76269 1.05642 1.02354 1.86032 1.23602 1.26435 1.88736 1.18916 0.91922 0.84996 0.96807 1.21396 1.01219 0.91196 1.08427 1.20545 0.92337 0.98501 0.96991 1.20817 0.94656 0.95674 1.04272 1.20426 0.96052 0.93080 0.97778 1.19746 0.92033 0.97388 1.07511 1.21636 0.92291 0.90667 1.00456 1.65168 1.02556 1.01626 1.54601 1.22404 0.93498 0.95075 0.95213 1.20505 0.95597 0.93374 0.96206 1.21672 0.96607 1.00220 0.99492 1.21913 0.97278 0.99007 0.99850 1.18794 0.94185 0.94105 0.90743 1.21760 1.46246 0.94488 0.92736 0.92052 1.25881 0.96133 0.99265 0.98838 1.70144 1.52264 1.28452 1.06964 0.85667 0.77968 0.80585 0.78137 1.20280 1.21482 1.18744 1.21827 0.87694 0.94941 0.99870 0.91378 0.86232 0.91875 0.82462 0.83672 0.84653 0.90586 0.89845 0.92793 0.91514 0.91731 0.93440 0.94210 0.93311 0.94007 0.92232 0.98074 1.01035 0.93498 0.89974 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.21 10.50 -92.43 -0.97 -8.18 16 3 C 0.12 2.90 6.69 22.51 0.15 3.05 16 4 C -0.20 -4.37 9.04 22.37 0.20 -4.17 16 5 C -0.07 -1.56 10.04 22.24 0.22 -1.34 16 6 C -0.15 -4.44 6.26 -19.65 -0.12 -4.56 16 7 C -0.07 -2.13 6.26 -19.68 -0.12 -2.25 16 8 C -0.15 -3.97 9.98 22.35 0.22 -3.75 16 9 C 0.08 2.30 6.55 85.49 0.56 2.86 16 10 N -0.52 -18.12 4.42 -897.07 -3.97 -22.09 16 11 C 0.07 2.21 3.87 86.30 0.33 2.54 16 12 C -0.06 -2.22 0.61 -52.18 -0.03 -2.25 16 13 C -0.12 -4.42 8.14 71.99 0.59 -3.83 16 14 C -0.12 -4.45 6.72 71.98 0.48 -3.97 16 15 C 0.06 3.10 3.78 29.85 0.11 3.22 16 16 C -0.51 -28.93 7.80 25.60 0.20 -28.73 16 17 H 0.06 3.30 5.77 -2.91 -0.02 3.28 16 18 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 19 N -0.94 -58.97 13.29 21.45 0.28 -58.68 16 20 Si 0.95 45.43 29.54 68.60 2.03 47.45 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 24 C 0.08 2.58 4.88 85.50 0.42 3.00 16 25 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 26 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.06 0.67 7.66 -2.38 -0.02 0.66 16 28 H 0.16 2.32 6.30 -2.91 -0.02 2.30 16 29 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 30 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 31 H 0.08 1.95 7.81 -2.39 -0.02 1.93 16 32 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.05 1.51 7.52 -2.39 -0.02 1.50 16 34 H 0.07 2.25 8.04 -2.39 -0.02 2.23 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 1.86 6.68 -2.39 -0.02 1.84 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.87 5.31 -2.39 -0.01 1.85 16 39 H 0.04 1.58 7.04 -2.39 -0.02 1.57 16 40 H 0.06 1.72 7.55 -2.38 -0.02 1.70 16 41 H 0.00 0.05 7.46 -2.39 -0.02 0.03 16 42 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 43 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 44 H 0.08 2.79 5.88 -2.39 -0.01 2.77 16 45 H 0.07 1.90 6.95 -2.39 -0.02 1.88 16 Total: -1.00 -69.98 347.73 3.13 -66.85 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.97 Total: 13.32 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 4.79 Total: -38.68 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -3.68 Total: -80.77 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.97 Total: -8.18 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -69.98 3.13 -66.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594616053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.341 kcal (2) G-P(sol) polarization free energy of solvation -69.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds