Wall clock time and date at job start Tue Mar 31 2020 06:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47359 * 2 1 4 4 C 1.50699 * 109.47060 * 120.00094 * 2 1 3 5 5 C 1.38256 * 120.00239 * 300.02366 * 4 2 1 6 6 C 1.38213 * 120.00319 * 179.97438 * 5 4 2 7 7 C 1.38253 * 119.99946 * 359.70239 * 6 5 4 8 8 C 1.38220 * 119.99683 * 0.54905 * 7 6 5 9 9 C 1.50699 * 119.99697 * 179.74387 * 8 7 6 10 10 N 1.46897 * 109.47348 * 269.72416 * 9 8 7 11 11 C 1.47446 * 110.99737 * 69.87656 * 10 9 8 12 12 C 1.54318 * 107.23303 * 236.74038 * 11 10 9 13 13 C 1.55138 * 103.01792 * 337.71992 * 12 11 10 14 14 O 1.42904 * 110.98776 * 277.55634 * 13 12 11 15 15 C 1.50702 * 110.99045 * 153.74778 * 13 12 11 16 16 H 1.07998 * 119.99553 * 247.73405 * 15 13 12 17 17 C 1.37873 * 120.00420 * 67.72623 * 15 13 12 18 18 N 1.31513 * 120.00036 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00141 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47414 * 59.99666 * 19 17 15 21 21 H 1.48500 * 109.47479 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46815 * 299.99675 * 19 17 15 23 23 C 1.47840 * 110.99988 * 309.03480 * 10 9 8 24 24 C 1.38217 * 119.99863 * 119.99650 * 4 2 1 25 25 H 1.09001 * 109.47074 * 300.00200 * 1 2 3 26 26 H 1.09006 * 109.46789 * 59.99808 * 1 2 3 27 27 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47074 * 239.99800 * 2 1 3 29 29 H 1.09001 * 109.46681 * 60.00005 * 3 2 1 30 30 H 1.08998 * 109.46985 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46949 * 299.99973 * 3 2 1 32 32 H 1.08005 * 120.00123 * 359.97438 * 5 4 2 33 33 H 1.08007 * 119.99827 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.00321 * 180.29212 * 7 6 5 35 35 H 1.09007 * 109.47094 * 149.72803 * 9 8 7 36 36 H 1.08998 * 109.47450 * 29.72647 * 9 8 7 37 37 H 1.08996 * 109.88895 * 356.15286 * 11 10 9 38 38 H 1.09001 * 109.88694 * 117.33682 * 11 10 9 39 39 H 1.09003 * 110.70170 * 96.09788 * 12 11 10 40 40 H 1.09002 * 110.70518 * 219.33180 * 12 11 10 41 41 H 0.96695 * 114.00511 * 292.27000 * 14 13 12 42 42 H 0.97001 * 120.00246 * 180.02562 * 18 17 15 43 43 H 1.08998 * 110.37675 * 265.18757 * 23 10 9 44 44 H 1.08993 * 110.37873 * 27.42361 * 23 10 9 45 45 H 1.07994 * 120.00164 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6979 -0.2384 2.4862 6 6 2.1582 -0.8903 3.6147 7 6 2.9479 -2.0179 3.4878 8 6 3.2865 -2.4868 2.2325 9 6 4.1521 -3.7127 2.0942 10 7 5.5647 -3.3122 2.0497 11 6 6.0133 -2.8110 3.3618 12 6 6.5568 -1.3832 3.1443 13 6 6.9099 -1.3700 1.6337 14 8 8.1936 -1.9539 1.4030 15 6 6.8478 0.0291 1.0770 16 1 6.0823 0.2922 0.3620 17 6 7.7679 0.9732 1.4806 18 7 8.7002 0.6528 2.3511 19 14 7.6904 2.7075 0.7910 20 1 6.3792 3.3168 1.1297 21 1 8.7827 3.5235 1.3795 22 1 7.8481 2.6608 -0.6848 23 6 5.7838 -2.2535 1.0414 24 6 2.8269 -1.8342 1.1036 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.0770 0.6397 2.5854 33 1 1.8973 -0.5212 4.5956 34 1 3.3037 -2.5301 4.3696 35 1 3.8942 -4.2377 1.1744 36 1 3.9879 -4.3715 2.9469 37 1 5.1736 -2.7864 4.0563 38 1 6.8027 -3.4525 3.7537 39 1 5.7903 -0.6410 3.3674 40 1 7.4472 -1.2133 3.7498 41 1 8.9303 -1.4365 1.7560 42 1 9.3474 1.3171 2.6353 43 1 6.1026 -2.6906 0.0952 44 1 4.8746 -1.6688 0.9013 45 1 3.0881 -2.2030 0.1227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595556419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:19 Heat of formation + Delta-G solvation = -30.846822 kcal Electronic energy + Delta-G solvation = -24444.361653 eV Core-core repulsion = 21233.012647 eV Total energy + Delta-G solvation = -3211.349006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92376 -38.01461 -35.58331 -34.37389 -32.01459 -31.46782 -29.96537 -28.81664 -27.97237 -27.06988 -25.56380 -24.02092 -22.76055 -21.86447 -20.08742 -19.56993 -18.92880 -17.07744 -16.41536 -15.53660 -15.21711 -14.86531 -14.72255 -14.54143 -14.00451 -13.82042 -13.52618 -13.42693 -13.12867 -12.73591 -12.53580 -12.24883 -11.97828 -11.82391 -11.75955 -11.46010 -11.21660 -11.13526 -11.02748 -10.92792 -10.87941 -10.66194 -10.52527 -10.47275 -10.41050 -10.19644 -9.79738 -9.16605 -8.55086 -8.42556 -8.35622 -8.00410 -7.53062 -6.17957 -4.24733 1.64098 1.68751 3.24396 3.29191 3.31895 4.02088 4.31743 4.73973 4.82761 4.92105 5.08790 5.15310 5.25363 5.28394 5.33973 5.43396 5.57415 5.66611 5.71732 5.73588 5.80150 5.87665 5.94562 5.99966 6.05884 6.13232 6.18767 6.20892 6.28210 6.35363 6.37091 6.40977 6.56206 6.73979 6.75971 6.83896 6.89674 6.96754 7.15383 7.29962 7.51905 7.52743 7.67835 7.81827 7.88283 8.20521 8.76392 9.43624 9.67109 10.89393 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012772 B = 0.007221 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.816717 B = 3876.891029 C = 5253.512096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 C -0.146 4.146 4 C -0.075 4.075 5 C -0.117 4.117 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.106 4.106 9 C 0.084 3.916 10 N -0.515 5.515 11 C 0.040 3.960 12 C -0.142 4.142 13 C 0.255 3.745 14 O -0.583 6.583 15 C -0.529 4.529 16 H 0.059 0.941 17 C 0.071 3.929 18 N -0.899 5.899 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.042 3.958 24 C -0.100 4.100 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.381 0.619 42 H 0.267 0.733 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.984 -2.412 0.284 14.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 C -0.203 4.203 4 C -0.075 4.075 5 C -0.136 4.136 6 C -0.137 4.137 7 C -0.131 4.131 8 C -0.108 4.108 9 C -0.044 4.044 10 N -0.237 5.237 11 C -0.088 4.088 12 C -0.182 4.182 13 C 0.215 3.785 14 O -0.392 6.392 15 C -0.568 4.568 16 H 0.077 0.923 17 C -0.130 4.130 18 N -0.539 5.539 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.084 4.084 24 C -0.119 4.119 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.232 0.768 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.875 -3.273 -0.043 14.255 hybrid contribution -0.064 2.273 0.347 2.301 sum -13.938 -1.000 0.304 13.978 Atomic orbital electron populations 1.21842 0.94726 1.01662 1.01592 1.20104 0.95454 0.96279 0.95594 1.21869 1.02252 0.94830 1.01381 1.19763 0.97664 0.95589 0.94524 1.20838 1.00907 0.99727 0.92090 1.21024 0.98542 0.95953 0.98190 1.20993 0.98317 0.97137 0.96682 1.20636 0.97494 0.99372 0.93255 1.21423 0.87442 0.93309 1.02208 1.63990 1.13988 1.39310 1.06425 1.22876 0.98366 0.97350 0.90198 1.23219 1.00357 0.92908 1.01670 1.19464 0.80993 0.89326 0.88756 1.86104 1.17191 1.53063 1.82861 1.21516 1.14380 0.95094 1.25818 0.92293 1.24971 0.94940 0.98950 0.94181 1.69575 1.17110 1.35291 1.31919 0.86587 0.77726 0.83858 0.79474 1.20152 1.21140 1.20044 1.23344 0.98849 0.91445 0.94797 1.20902 0.97107 0.95753 0.98117 0.92644 0.92652 0.92740 0.90571 0.92673 0.91736 0.92713 0.86742 0.86621 0.86598 0.90566 0.90799 0.94114 0.91867 0.92759 0.91178 0.76800 0.92267 0.91630 0.91571 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.01 37.16 0.33 -1.12 16 2 C -0.06 -0.70 3.09 -91.77 -0.28 -0.99 16 3 C -0.15 -1.90 9.01 37.16 0.33 -1.56 16 4 C -0.08 -1.11 4.78 -104.62 -0.50 -1.61 16 5 C -0.12 -1.67 8.71 -39.58 -0.34 -2.02 16 6 C -0.12 -1.72 10.05 -39.59 -0.40 -2.12 16 7 C -0.11 -1.73 8.63 -39.58 -0.34 -2.07 16 8 C -0.11 -1.70 4.21 -104.62 -0.44 -2.14 16 9 C 0.08 1.36 5.52 -4.98 -0.03 1.33 16 10 N -0.52 -10.26 5.41 -232.70 -1.26 -11.52 16 11 C 0.04 0.80 6.40 -2.83 -0.02 0.78 16 12 C -0.14 -3.37 5.63 -24.91 -0.14 -3.51 16 13 C 0.26 6.49 0.89 -89.63 -0.08 6.42 16 14 O -0.58 -15.87 13.18 -35.23 -0.46 -16.33 16 15 C -0.53 -14.41 8.25 -34.44 -0.28 -14.69 16 16 H 0.06 1.60 7.77 -52.49 -0.41 1.19 16 17 C 0.07 1.91 5.29 -17.82 -0.09 1.82 16 18 N -0.90 -24.44 10.77 55.43 0.60 -23.84 16 19 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.04 0.95 5.62 -2.30 -0.01 0.93 16 24 C -0.10 -1.58 7.04 -39.58 -0.28 -1.86 16 25 H 0.05 0.55 7.39 -51.93 -0.38 0.17 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.94 7.88 -51.93 -0.41 0.53 16 29 H 0.05 0.68 7.39 -51.93 -0.38 0.30 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.11 1.42 7.10 -52.48 -0.37 1.04 16 33 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.12 1.64 6.90 -52.49 -0.36 1.28 16 35 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 36 H 0.07 1.07 7.98 -51.93 -0.41 0.65 16 37 H 0.04 0.73 5.20 -51.93 -0.27 0.46 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.05 1.33 8.03 -51.93 -0.42 0.92 16 40 H 0.07 1.77 7.83 -51.93 -0.41 1.36 16 41 H 0.38 10.52 6.93 45.56 0.32 10.83 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 44 H 0.07 1.43 4.01 -51.93 -0.21 1.22 16 45 H 0.12 1.79 7.73 -52.49 -0.41 1.38 16 LS Contribution 347.82 15.07 5.24 5.24 Total: -1.00 -28.45 347.82 -10.12 -38.57 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -6.64 Total: 14.36 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -2.58 Total: -22.41 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.66 Total: -35.36 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.46 Total: -16.33 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.45 -10.12 -38.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595556419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.725 kcal (2) G-P(sol) polarization free energy of solvation -28.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds