Wall clock time and date at job start Tue Mar 31 2020 06:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47359 * 2 1 4 4 C 1.50699 * 109.47060 * 120.00094 * 2 1 3 5 5 C 1.38256 * 120.00239 * 300.02366 * 4 2 1 6 6 C 1.38213 * 120.00319 * 179.97438 * 5 4 2 7 7 C 1.38253 * 119.99946 * 359.70239 * 6 5 4 8 8 C 1.38220 * 119.99683 * 0.54905 * 7 6 5 9 9 C 1.50699 * 119.99697 * 179.74387 * 8 7 6 10 10 N 1.46897 * 109.47348 * 269.72416 * 9 8 7 11 11 C 1.47446 * 110.99737 * 69.87656 * 10 9 8 12 12 C 1.54318 * 107.23303 * 236.74038 * 11 10 9 13 13 C 1.55138 * 103.01792 * 337.71992 * 12 11 10 14 14 O 1.42904 * 110.98776 * 277.55634 * 13 12 11 15 15 C 1.50702 * 110.99045 * 153.74778 * 13 12 11 16 16 H 1.07998 * 119.99553 * 247.73405 * 15 13 12 17 17 C 1.37873 * 120.00420 * 67.72623 * 15 13 12 18 18 N 1.31513 * 120.00036 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00141 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47414 * 59.99666 * 19 17 15 21 21 H 1.48500 * 109.47479 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46815 * 299.99675 * 19 17 15 23 23 C 1.47840 * 110.99988 * 309.03480 * 10 9 8 24 24 C 1.38217 * 119.99863 * 119.99650 * 4 2 1 25 25 H 1.09001 * 109.47074 * 300.00200 * 1 2 3 26 26 H 1.09006 * 109.46789 * 59.99808 * 1 2 3 27 27 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47074 * 239.99800 * 2 1 3 29 29 H 1.09001 * 109.46681 * 60.00005 * 3 2 1 30 30 H 1.08998 * 109.46985 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46949 * 299.99973 * 3 2 1 32 32 H 1.08005 * 120.00123 * 359.97438 * 5 4 2 33 33 H 1.08007 * 119.99827 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.00321 * 180.29212 * 7 6 5 35 35 H 1.09007 * 109.47094 * 149.72803 * 9 8 7 36 36 H 1.08998 * 109.47450 * 29.72647 * 9 8 7 37 37 H 1.08996 * 109.88895 * 356.15286 * 11 10 9 38 38 H 1.09001 * 109.88694 * 117.33682 * 11 10 9 39 39 H 1.09003 * 110.70170 * 96.09788 * 12 11 10 40 40 H 1.09002 * 110.70518 * 219.33180 * 12 11 10 41 41 H 0.96695 * 114.00511 * 292.27000 * 14 13 12 42 42 H 0.97001 * 120.00246 * 180.02562 * 18 17 15 43 43 H 1.08998 * 110.37675 * 265.18757 * 23 10 9 44 44 H 1.08993 * 110.37873 * 27.42361 * 23 10 9 45 45 H 1.07994 * 120.00164 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6979 -0.2384 2.4862 6 6 2.1582 -0.8903 3.6147 7 6 2.9479 -2.0179 3.4878 8 6 3.2865 -2.4868 2.2325 9 6 4.1521 -3.7127 2.0942 10 7 5.5647 -3.3122 2.0497 11 6 6.0133 -2.8110 3.3618 12 6 6.5568 -1.3832 3.1443 13 6 6.9099 -1.3700 1.6337 14 8 8.1936 -1.9539 1.4030 15 6 6.8478 0.0291 1.0770 16 1 6.0823 0.2922 0.3620 17 6 7.7679 0.9732 1.4806 18 7 8.7002 0.6528 2.3511 19 14 7.6904 2.7075 0.7910 20 1 6.3792 3.3168 1.1297 21 1 8.7827 3.5235 1.3795 22 1 7.8481 2.6608 -0.6848 23 6 5.7838 -2.2535 1.0414 24 6 2.8269 -1.8342 1.1036 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.0770 0.6397 2.5854 33 1 1.8973 -0.5212 4.5956 34 1 3.3037 -2.5301 4.3696 35 1 3.8942 -4.2377 1.1744 36 1 3.9879 -4.3715 2.9469 37 1 5.1736 -2.7864 4.0563 38 1 6.8027 -3.4525 3.7537 39 1 5.7903 -0.6410 3.3674 40 1 7.4472 -1.2133 3.7498 41 1 8.9303 -1.4365 1.7560 42 1 9.3474 1.3171 2.6353 43 1 6.1026 -2.6906 0.0952 44 1 4.8746 -1.6688 0.9013 45 1 3.0881 -2.2030 0.1227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595556419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:19 Heat of formation + Delta-G solvation = -48.040406 kcal Electronic energy + Delta-G solvation = -24445.107223 eV Core-core repulsion = 21233.012647 eV Total energy + Delta-G solvation = -3212.094576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22885 -39.55032 -37.06061 -35.81780 -34.10818 -32.91373 -31.23118 -30.29896 -29.74208 -27.98444 -27.26449 -25.64622 -23.92288 -23.07848 -21.65523 -21.40008 -20.17106 -19.10282 -17.57259 -16.93119 -16.86643 -16.68700 -16.24544 -15.97617 -15.54468 -15.17541 -14.74860 -14.63977 -14.36096 -14.23737 -14.05024 -13.71714 -13.34664 -13.21488 -13.15703 -12.90454 -12.79562 -12.69925 -12.59176 -12.36622 -12.27714 -12.26969 -12.15728 -12.02144 -11.69232 -11.55583 -11.44599 -11.12510 -10.60123 -10.07093 -9.60319 -9.53132 -9.08943 -8.23095 -6.37404 0.48307 0.53317 1.37362 1.38488 1.46009 2.35725 2.85415 3.01350 3.29510 3.71779 3.85082 3.95654 4.05418 4.15078 4.16145 4.21108 4.27088 4.32469 4.44941 4.50098 4.54111 4.63316 4.70875 4.79422 4.80146 4.84931 4.94323 4.96058 4.98716 5.08625 5.11213 5.19307 5.25125 5.29201 5.33697 5.39619 5.49657 5.55104 5.61771 5.66730 5.76826 5.81394 5.98042 6.17399 6.21625 6.30046 6.67147 7.33714 7.52249 8.82654 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012772 B = 0.007221 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.816717 B = 3876.891029 C = 5253.512096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.082 4.082 5 C -0.124 4.124 6 C -0.125 4.125 7 C -0.125 4.125 8 C -0.118 4.118 9 C 0.085 3.915 10 N -0.522 5.522 11 C 0.049 3.951 12 C -0.130 4.130 13 C 0.237 3.763 14 O -0.593 6.593 15 C -0.553 4.553 16 H 0.051 0.949 17 C 0.031 3.969 18 N -0.915 5.915 19 Si 0.953 3.047 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.273 1.273 23 C 0.052 3.948 24 C -0.119 4.119 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.127 0.873 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.375 0.625 42 H 0.270 0.730 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.827 -1.933 0.551 15.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.082 4.082 5 C -0.142 4.142 6 C -0.142 4.142 7 C -0.144 4.144 8 C -0.120 4.120 9 C -0.043 4.043 10 N -0.244 5.244 11 C -0.079 4.079 12 C -0.170 4.170 13 C 0.197 3.803 14 O -0.402 6.402 15 C -0.591 4.591 16 H 0.069 0.931 17 C -0.169 4.169 18 N -0.555 5.555 19 Si 0.778 3.222 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.198 1.198 23 C -0.075 4.075 24 C -0.138 4.138 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.145 0.855 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.225 0.775 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.732 -2.809 0.225 15.982 hybrid contribution 0.485 2.126 0.260 2.196 sum -15.247 -0.682 0.484 15.270 Atomic orbital electron populations 1.21787 0.92593 1.02107 1.02656 1.20151 0.97169 0.95605 0.94587 1.21853 1.00123 0.95497 1.02661 1.20065 0.97186 0.95288 0.95706 1.21142 1.00906 1.00252 0.91871 1.21366 0.97913 0.95547 0.99417 1.21209 0.98713 0.97714 0.96757 1.20657 0.98090 0.99489 0.93775 1.21521 0.85136 0.93783 1.03831 1.63903 1.16969 1.37978 1.05511 1.22782 0.99247 0.94812 0.91025 1.22977 0.98988 0.94899 1.00092 1.19739 0.80920 0.89443 0.90167 1.86097 1.17846 1.53234 1.83055 1.21749 1.14691 0.96454 1.26237 0.93091 1.25650 0.94589 1.02298 0.94393 1.69659 1.17296 1.36262 1.32304 0.85686 0.77918 0.79740 0.78807 1.19677 1.20432 1.19838 1.23162 0.97934 0.91638 0.94761 1.21051 0.97983 0.96615 0.98158 0.92059 0.91111 0.92615 0.90874 0.92084 0.94919 0.90796 0.84801 0.84371 0.85470 0.89477 0.88645 0.91467 0.91914 0.94136 0.93408 0.77523 0.92094 0.92925 0.90907 0.86524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.01 71.98 0.65 -1.79 16 2 C -0.06 -1.35 3.09 -11.54 -0.04 -1.39 16 3 C -0.14 -3.57 9.01 71.98 0.65 -2.92 16 4 C -0.08 -2.33 4.78 -19.87 -0.09 -2.43 16 5 C -0.12 -3.30 8.71 22.27 0.19 -3.10 16 6 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 7 C -0.13 -3.62 8.63 22.27 0.19 -3.43 16 8 C -0.12 -3.66 4.21 -19.86 -0.08 -3.75 16 9 C 0.08 2.59 5.52 85.56 0.47 3.07 16 10 N -0.52 -20.33 5.41 -890.13 -4.82 -25.14 16 11 C 0.05 1.93 6.40 86.65 0.55 2.48 16 12 C -0.13 -6.24 5.63 31.77 0.18 -6.06 16 13 C 0.24 12.29 0.89 -10.16 -0.01 12.28 16 14 O -0.59 -33.04 13.18 -148.98 -1.96 -35.01 16 15 C -0.55 -30.60 8.25 25.60 0.21 -30.38 16 16 H 0.05 2.82 7.77 -2.91 -0.02 2.80 16 17 C 0.03 1.66 5.29 84.65 0.45 2.11 16 18 N -0.91 -50.32 10.77 21.45 0.23 -50.09 16 19 Si 0.95 43.03 29.54 68.60 2.03 45.05 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 C 0.05 2.35 5.62 86.77 0.49 2.84 16 24 C -0.12 -3.70 7.04 22.27 0.16 -3.54 16 25 H 0.06 1.04 7.39 -2.39 -0.02 1.02 16 26 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.76 7.88 -2.39 -0.02 1.74 16 29 H 0.06 1.41 7.39 -2.39 -0.02 1.39 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.13 2.97 7.10 -2.91 -0.02 2.95 16 33 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 34 H 0.13 3.29 6.90 -2.91 -0.02 3.27 16 35 H 0.09 2.46 8.09 -2.38 -0.02 2.44 16 36 H 0.10 2.51 7.98 -2.39 -0.02 2.49 16 37 H 0.07 2.28 5.20 -2.39 -0.01 2.27 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.04 2.00 8.03 -2.39 -0.02 1.98 16 40 H 0.05 2.45 7.83 -2.39 -0.02 2.43 16 41 H 0.37 21.30 6.93 -74.06 -0.51 20.79 16 42 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 43 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.07 3.17 4.01 -2.39 -0.01 3.16 16 45 H 0.12 3.54 7.73 -2.91 -0.02 3.51 16 Total: -1.00 -60.74 347.82 0.13 -60.62 By element: Atomic # 1 Polarization: 43.24 SS G_CDS: 0.46 Total: 43.70 kcal Atomic # 6 Polarization: -43.32 SS G_CDS: 4.19 Total: -39.13 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -4.59 Total: -75.24 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.96 Total: -35.01 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -60.74 0.13 -60.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595556419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.576 kcal (2) G-P(sol) polarization free energy of solvation -60.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds