Wall clock time and date at job start Tue Mar 31 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.89478 * 2 1 4 4 C 1.54385 * 109.82801 * 120.93250 * 2 1 3 5 5 C 1.55309 * 102.24870 * 98.15761 * 4 2 1 6 6 H 1.08998 * 111.12369 * 276.16883 * 5 4 2 7 7 N 1.46903 * 111.12259 * 152.05043 * 5 4 2 8 8 C 1.46903 * 110.99965 * 73.60636 * 7 5 4 9 9 C 1.50701 * 109.46926 * 76.39195 * 8 7 5 10 10 H 1.08004 * 120.00509 * 4.19440 * 9 8 7 11 11 C 1.37881 * 120.00147 * 184.18282 * 9 8 7 12 12 N 1.31521 * 119.99485 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00320 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46994 * 60.00121 * 13 11 9 15 15 H 1.48495 * 109.47182 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47061 * 300.00465 * 13 11 9 17 17 C 1.46899 * 111.00016 * 309.65249 * 7 5 4 18 18 C 1.50698 * 109.46865 * 199.60193 * 17 7 5 19 19 C 1.38238 * 120.00048 * 269.72738 * 18 17 7 20 20 C 1.38232 * 119.99723 * 179.74741 * 19 18 17 21 21 C 1.38235 * 120.00411 * 0.55218 * 20 19 18 22 22 C 1.38236 * 119.99374 * 359.69909 * 21 20 19 23 23 C 1.38230 * 119.99758 * 90.00429 * 18 17 7 24 24 C 1.54943 * 100.94705 * 34.13001 * 5 4 2 25 25 O 1.43235 * 109.82910 * 239.06541 * 2 1 3 26 26 H 1.09007 * 109.47057 * 299.07154 * 1 2 3 27 27 H 1.09003 * 109.47112 * 59.06584 * 1 2 3 28 28 H 1.08998 * 109.47695 * 179.07071 * 1 2 3 29 29 H 1.09008 * 109.46461 * 180.93645 * 3 2 1 30 30 H 1.09004 * 109.47495 * 300.92943 * 3 2 1 31 31 H 1.08997 * 109.47535 * 60.93585 * 3 2 1 32 32 H 1.08997 * 110.85098 * 339.96498 * 4 2 1 33 33 H 1.08998 * 111.01822 * 216.42003 * 4 2 1 34 34 H 1.08999 * 109.47238 * 196.39155 * 8 7 5 35 35 H 1.08999 * 109.47330 * 316.39700 * 8 7 5 36 36 H 0.97001 * 119.99330 * 179.97438 * 12 11 9 37 37 H 1.08993 * 109.47185 * 319.60450 * 17 7 5 38 38 H 1.09007 * 109.47055 * 79.60211 * 17 7 5 39 39 H 1.08000 * 120.00074 * 359.97438 * 19 18 17 40 40 H 1.08001 * 119.99911 * 180.27490 * 20 19 18 41 41 H 1.08000 * 120.00525 * 179.72335 * 21 20 19 42 42 H 1.08003 * 119.99902 * 180.02562 * 22 21 20 43 43 H 1.07996 * 120.00546 * 359.97438 * 23 18 17 44 44 H 1.09005 * 110.30762 * 82.46631 * 24 5 4 45 45 H 1.08996 * 110.30899 * 204.64174 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0506 1.4387 0.0000 4 6 2.0537 -0.7465 1.2458 5 6 2.3680 -2.1570 0.6767 6 1 1.4731 -2.7787 0.6513 7 7 3.4402 -2.8091 1.4404 8 6 2.9543 -3.2579 2.7521 9 6 2.1330 -4.5099 2.5820 10 1 2.0426 -4.9684 1.6083 11 6 1.4972 -5.0705 3.6695 12 7 1.6071 -4.5121 4.8552 13 14 0.4798 -6.6228 3.4588 14 1 1.3448 -7.7158 2.9464 15 1 -0.0955 -7.0192 4.7691 16 1 -0.6191 -6.3672 2.4931 17 6 4.5998 -1.9190 1.5850 18 6 5.8203 -2.7352 1.9245 19 6 6.1422 -2.9802 3.2464 20 6 7.2588 -3.7333 3.5576 21 6 8.0599 -4.2318 2.5474 22 6 7.7408 -3.9824 1.2257 23 6 6.6211 -3.2341 0.9142 24 6 2.8406 -1.7982 -0.7546 25 8 2.0159 -0.6927 -1.1558 26 1 -0.3633 0.4994 0.8983 27 1 -0.3633 0.5283 -0.8815 28 1 -0.3634 -1.0275 -0.0167 29 1 3.1406 1.4305 -0.0168 30 1 1.6776 1.9601 -0.8815 31 1 1.7049 1.9502 0.8982 32 1 1.2851 -0.8017 2.0166 33 1 2.9565 -0.2747 1.6335 34 1 3.8038 -3.4662 3.4025 35 1 2.3381 -2.4771 3.1979 36 1 1.1595 -4.9062 5.6202 37 1 4.7678 -1.3862 0.6491 38 1 4.4095 -1.2009 2.3827 39 1 5.5193 -2.5863 4.0358 40 1 7.5078 -3.9285 4.5903 41 1 8.9348 -4.8165 2.7907 42 1 8.3665 -4.3722 0.4363 43 1 6.3719 -3.0393 -0.1184 44 1 3.8899 -1.5030 -0.7437 45 1 2.6917 -2.6443 -1.4254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595638165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:42 Heat of formation + Delta-G solvation = -18.759325 kcal Electronic energy + Delta-G solvation = -23925.445487 eV Core-core repulsion = 20714.620634 eV Total energy + Delta-G solvation = -3210.824853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.99119 -38.76488 -36.18736 -32.94457 -32.68469 -31.48244 -30.50956 -29.27391 -27.32382 -26.99175 -25.56860 -24.59907 -22.46433 -21.83163 -21.15006 -19.78073 -19.15257 -16.64950 -16.37898 -16.01045 -15.55667 -14.84617 -14.72596 -14.65374 -14.48044 -13.75537 -13.50186 -13.41915 -13.38290 -13.00383 -12.70410 -12.39948 -12.16120 -12.12787 -11.95096 -11.80470 -11.71727 -11.48707 -11.14623 -10.90506 -10.75367 -10.66165 -10.58548 -10.45909 -10.21383 -10.20525 -9.84920 -9.30692 -9.13954 -8.51088 -8.39074 -8.29685 -7.33175 -6.03698 -4.04162 1.77268 1.83201 3.32616 3.36643 3.40085 4.01103 4.18328 4.42883 4.75500 5.00043 5.09393 5.14273 5.20393 5.26889 5.31709 5.35678 5.43270 5.48414 5.54868 5.62607 5.67689 5.72141 5.82721 5.88673 5.93485 5.98567 6.03435 6.06197 6.10208 6.12680 6.28487 6.34361 6.42328 6.45712 6.48308 6.67793 6.84643 6.89964 7.07746 7.16694 7.29601 7.36868 7.42701 7.79151 8.05414 8.11418 8.48719 9.02870 9.59662 11.06566 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.008889 B = 0.007527 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.300623 B = 3719.040668 C = 6098.258133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.103 3.897 3 C -0.151 4.151 4 C -0.180 4.180 5 C 0.069 3.931 6 H 0.106 0.894 7 N -0.515 5.515 8 C 0.189 3.811 9 C -0.503 4.503 10 H 0.062 0.938 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.082 3.918 18 C -0.059 4.059 19 C -0.101 4.101 20 C -0.121 4.121 21 C -0.130 4.130 22 C -0.127 4.127 23 C -0.104 4.104 24 C 0.051 3.949 25 O -0.379 6.379 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.036 0.964 35 H -0.001 1.001 36 H 0.261 0.739 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.060 0.940 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.433 8.101 -6.760 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.063 3.937 3 C -0.208 4.208 4 C -0.220 4.220 5 C -0.041 4.041 6 H 0.124 0.876 7 N -0.238 5.238 8 C 0.065 3.935 9 C -0.542 4.542 10 H 0.080 0.920 11 C -0.145 4.145 12 N -0.539 5.539 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.045 4.045 18 C -0.059 4.059 19 C -0.119 4.119 20 C -0.139 4.139 21 C -0.148 4.148 22 C -0.146 4.146 23 C -0.122 4.122 24 C -0.025 4.025 25 O -0.298 6.298 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.017 0.983 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.078 0.922 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.464 7.717 -7.035 12.281 hybrid contribution -0.836 -0.365 0.809 1.220 sum 5.628 7.353 -6.226 11.158 Atomic orbital electron populations 1.22048 0.94283 1.02780 1.01647 1.21957 0.94000 0.92053 0.85676 1.22077 1.01282 0.95613 1.01835 1.23848 1.02284 0.97996 0.97841 1.23303 0.96214 0.92517 0.92039 0.87616 1.62182 1.04358 1.35154 1.22122 1.19868 0.95280 0.95146 0.83239 1.21105 1.28997 1.09244 0.94869 0.92029 1.24951 0.96796 0.97515 0.95205 1.69940 1.44227 1.40323 0.99405 0.86610 0.80421 0.83605 0.77087 1.20204 1.21405 1.20312 1.21140 0.90013 0.93401 0.99953 1.19768 0.95156 0.97925 0.93062 1.21128 0.96276 0.98289 0.96231 1.21062 0.95508 0.98406 0.98973 1.21017 0.99905 1.00740 0.93140 1.21018 0.97723 0.99604 0.96211 1.20917 0.94669 0.97898 0.98731 1.23509 0.94168 0.88668 0.96177 1.88385 1.67517 1.43841 1.30072 0.91806 0.92459 0.91813 0.92490 0.92342 0.91822 0.89869 0.90687 0.94580 0.98317 0.92951 0.90933 0.94468 0.86136 0.86578 0.86836 0.86739 0.86559 0.92233 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.73 37.16 0.32 -1.71 16 2 C 0.10 1.50 1.27 -89.90 -0.11 1.39 16 3 C -0.15 -1.86 8.75 37.16 0.33 -1.54 16 4 C -0.18 -2.95 4.71 -24.78 -0.12 -3.07 16 5 C 0.07 1.27 3.04 -65.46 -0.20 1.07 16 6 H 0.11 2.19 7.58 -51.93 -0.39 1.79 16 7 N -0.51 -10.40 4.38 -226.83 -0.99 -11.40 16 8 C 0.19 4.65 4.49 -4.97 -0.02 4.63 16 9 C -0.50 -13.79 8.66 -34.44 -0.30 -14.08 16 10 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 11 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 13 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 C 0.08 1.43 3.79 -4.98 -0.02 1.41 16 18 C -0.06 -1.02 5.17 -104.63 -0.54 -1.56 16 19 C -0.10 -1.77 8.30 -39.58 -0.33 -2.10 16 20 C -0.12 -1.91 10.05 -39.58 -0.40 -2.30 16 21 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 22 C -0.13 -1.83 10.05 -39.58 -0.40 -2.22 16 23 C -0.10 -1.62 9.70 -39.58 -0.38 -2.01 16 24 C 0.05 0.82 7.27 38.18 0.28 1.10 16 25 O -0.38 -6.14 10.68 -35.23 -0.38 -6.51 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.46 7.66 -51.93 -0.40 1.06 16 33 H 0.07 1.19 5.61 -51.93 -0.29 0.90 16 34 H 0.04 0.94 5.43 -51.93 -0.28 0.66 16 35 H 0.00 -0.03 7.21 -51.93 -0.37 -0.40 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.07 1.12 5.54 -51.93 -0.29 0.83 16 38 H 0.04 0.65 6.84 -51.92 -0.36 0.29 16 39 H 0.12 2.18 7.38 -52.49 -0.39 1.80 16 40 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 43 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.06 0.90 5.79 -51.93 -0.30 0.60 16 45 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -29.30 353.08 -9.98 -39.29 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.27 Total: 3.86 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -2.39 Total: -21.78 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.26 Total: -36.74 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.38 Total: -6.51 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.30 -9.98 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595638165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.527 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds