Wall clock time and date at job start Tue Mar 31 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.89478 * 2 1 4 4 C 1.54385 * 109.82801 * 120.93250 * 2 1 3 5 5 C 1.55309 * 102.24870 * 98.15761 * 4 2 1 6 6 H 1.08998 * 111.12369 * 276.16883 * 5 4 2 7 7 N 1.46903 * 111.12259 * 152.05043 * 5 4 2 8 8 C 1.46903 * 110.99965 * 73.60636 * 7 5 4 9 9 C 1.50701 * 109.46926 * 76.39195 * 8 7 5 10 10 H 1.08004 * 120.00509 * 4.19440 * 9 8 7 11 11 C 1.37881 * 120.00147 * 184.18282 * 9 8 7 12 12 N 1.31521 * 119.99485 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00320 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46994 * 60.00121 * 13 11 9 15 15 H 1.48495 * 109.47182 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47061 * 300.00465 * 13 11 9 17 17 C 1.46899 * 111.00016 * 309.65249 * 7 5 4 18 18 C 1.50698 * 109.46865 * 199.60193 * 17 7 5 19 19 C 1.38238 * 120.00048 * 269.72738 * 18 17 7 20 20 C 1.38232 * 119.99723 * 179.74741 * 19 18 17 21 21 C 1.38235 * 120.00411 * 0.55218 * 20 19 18 22 22 C 1.38236 * 119.99374 * 359.69909 * 21 20 19 23 23 C 1.38230 * 119.99758 * 90.00429 * 18 17 7 24 24 C 1.54943 * 100.94705 * 34.13001 * 5 4 2 25 25 O 1.43235 * 109.82910 * 239.06541 * 2 1 3 26 26 H 1.09007 * 109.47057 * 299.07154 * 1 2 3 27 27 H 1.09003 * 109.47112 * 59.06584 * 1 2 3 28 28 H 1.08998 * 109.47695 * 179.07071 * 1 2 3 29 29 H 1.09008 * 109.46461 * 180.93645 * 3 2 1 30 30 H 1.09004 * 109.47495 * 300.92943 * 3 2 1 31 31 H 1.08997 * 109.47535 * 60.93585 * 3 2 1 32 32 H 1.08997 * 110.85098 * 339.96498 * 4 2 1 33 33 H 1.08998 * 111.01822 * 216.42003 * 4 2 1 34 34 H 1.08999 * 109.47238 * 196.39155 * 8 7 5 35 35 H 1.08999 * 109.47330 * 316.39700 * 8 7 5 36 36 H 0.97001 * 119.99330 * 179.97438 * 12 11 9 37 37 H 1.08993 * 109.47185 * 319.60450 * 17 7 5 38 38 H 1.09007 * 109.47055 * 79.60211 * 17 7 5 39 39 H 1.08000 * 120.00074 * 359.97438 * 19 18 17 40 40 H 1.08001 * 119.99911 * 180.27490 * 20 19 18 41 41 H 1.08000 * 120.00525 * 179.72335 * 21 20 19 42 42 H 1.08003 * 119.99902 * 180.02562 * 22 21 20 43 43 H 1.07996 * 120.00546 * 359.97438 * 23 18 17 44 44 H 1.09005 * 110.30762 * 82.46631 * 24 5 4 45 45 H 1.08996 * 110.30899 * 204.64174 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0506 1.4387 0.0000 4 6 2.0537 -0.7465 1.2458 5 6 2.3680 -2.1570 0.6767 6 1 1.4731 -2.7787 0.6513 7 7 3.4402 -2.8091 1.4404 8 6 2.9543 -3.2579 2.7521 9 6 2.1330 -4.5099 2.5820 10 1 2.0426 -4.9684 1.6083 11 6 1.4972 -5.0705 3.6695 12 7 1.6071 -4.5121 4.8552 13 14 0.4798 -6.6228 3.4588 14 1 1.3448 -7.7158 2.9464 15 1 -0.0955 -7.0192 4.7691 16 1 -0.6191 -6.3672 2.4931 17 6 4.5998 -1.9190 1.5850 18 6 5.8203 -2.7352 1.9245 19 6 6.1422 -2.9802 3.2464 20 6 7.2588 -3.7333 3.5576 21 6 8.0599 -4.2318 2.5474 22 6 7.7408 -3.9824 1.2257 23 6 6.6211 -3.2341 0.9142 24 6 2.8406 -1.7982 -0.7546 25 8 2.0159 -0.6927 -1.1558 26 1 -0.3633 0.4994 0.8983 27 1 -0.3633 0.5283 -0.8815 28 1 -0.3634 -1.0275 -0.0167 29 1 3.1406 1.4305 -0.0168 30 1 1.6776 1.9601 -0.8815 31 1 1.7049 1.9502 0.8982 32 1 1.2851 -0.8017 2.0166 33 1 2.9565 -0.2747 1.6335 34 1 3.8038 -3.4662 3.4025 35 1 2.3381 -2.4771 3.1979 36 1 1.1595 -4.9062 5.6202 37 1 4.7678 -1.3862 0.6491 38 1 4.4095 -1.2009 2.3827 39 1 5.5193 -2.5863 4.0358 40 1 7.5078 -3.9285 4.5903 41 1 8.9348 -4.8165 2.7907 42 1 8.3665 -4.3722 0.4363 43 1 6.3719 -3.0393 -0.1184 44 1 3.8899 -1.5030 -0.7437 45 1 2.6917 -2.6443 -1.4254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595638165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:41 Heat of formation + Delta-G solvation = -35.061093 kcal Electronic energy + Delta-G solvation = -23926.152385 eV Core-core repulsion = 20714.620634 eV Total energy + Delta-G solvation = -3211.531751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34154 -39.99135 -37.68841 -34.77097 -34.12085 -32.78130 -31.73484 -30.89949 -28.82441 -28.22740 -26.85018 -26.24072 -24.10309 -23.23217 -22.44208 -21.02470 -20.62817 -18.45634 -17.97220 -17.26292 -16.92231 -16.62439 -16.04553 -15.98071 -15.87235 -15.20069 -14.85857 -14.83381 -14.64286 -14.27082 -14.17142 -13.86905 -13.61781 -13.37321 -13.31204 -13.17692 -13.02389 -12.86674 -12.68818 -12.57623 -12.39497 -12.15471 -12.01753 -11.82226 -11.74176 -11.55903 -11.45354 -11.27392 -10.57487 -10.42931 -9.69626 -9.55594 -8.99381 -8.18308 -6.26558 0.54198 0.61044 1.38418 1.40418 1.48141 2.39038 2.74059 2.93752 3.13970 3.31299 3.70321 3.84801 3.88573 3.97139 4.05434 4.11070 4.17484 4.26743 4.28987 4.34307 4.41477 4.54928 4.69316 4.73900 4.76319 4.77441 4.79544 4.85107 4.91094 4.94877 5.00611 5.12243 5.19896 5.23453 5.24568 5.26774 5.32019 5.38611 5.65402 5.66585 5.69487 5.83469 6.08851 6.09991 6.22737 6.36697 6.58817 6.87862 7.41721 8.91063 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.008889 B = 0.007527 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.300623 B = 3719.040668 C = 6098.258133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.101 3.899 3 C -0.146 4.146 4 C -0.174 4.174 5 C 0.063 3.937 6 H 0.074 0.926 7 N -0.519 5.519 8 C 0.208 3.792 9 C -0.517 4.517 10 H 0.055 0.945 11 C 0.006 3.994 12 N -0.931 5.931 13 Si 0.958 3.042 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.270 1.270 17 C 0.089 3.911 18 C -0.081 4.081 19 C -0.127 4.127 20 C -0.133 4.133 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.111 4.111 24 C 0.063 3.937 25 O -0.385 6.385 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.017 0.983 35 H -0.029 1.029 36 H 0.262 0.738 37 H 0.096 0.904 38 H 0.028 0.972 39 H 0.098 0.902 40 H 0.129 0.871 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.134 0.866 44 H 0.074 0.926 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.509 8.009 -8.533 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.062 3.938 3 C -0.204 4.204 4 C -0.213 4.213 5 C -0.047 4.047 6 H 0.093 0.907 7 N -0.242 5.242 8 C 0.083 3.917 9 C -0.556 4.556 10 H 0.073 0.927 11 C -0.192 4.192 12 N -0.572 5.572 13 Si 0.783 3.217 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.195 1.195 17 C -0.038 4.038 18 C -0.082 4.082 19 C -0.146 4.146 20 C -0.151 4.151 21 C -0.146 4.146 22 C -0.143 4.143 23 C -0.129 4.129 24 C -0.013 4.013 25 O -0.305 6.305 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.035 0.965 35 H -0.011 1.011 36 H 0.071 0.929 37 H 0.114 0.886 38 H 0.047 0.953 39 H 0.116 0.884 40 H 0.147 0.853 41 H 0.164 0.836 42 H 0.166 0.834 43 H 0.152 0.848 44 H 0.092 0.908 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.543 7.640 -8.827 13.899 hybrid contribution -1.121 -0.327 1.366 1.797 sum 6.422 7.313 -7.461 12.263 Atomic orbital electron populations 1.22058 0.93588 1.02073 1.02999 1.22095 0.94648 0.93030 0.84009 1.22050 1.01427 0.93775 1.03109 1.23755 1.01969 0.97238 0.98331 1.23234 0.94810 0.92831 0.93803 0.90733 1.62052 1.05517 1.36985 1.19617 1.19443 0.93645 0.93559 0.85084 1.21409 1.29404 1.10192 0.94586 0.92678 1.25761 0.97926 1.00590 0.94885 1.70060 1.45182 1.41806 1.00102 0.85612 0.78995 0.79805 0.77291 1.19675 1.20822 1.19498 1.21147 0.88969 0.92944 1.00753 1.19861 0.95672 0.99134 0.93504 1.21137 0.97372 0.99946 0.96136 1.21317 0.95184 0.98156 1.00423 1.21422 1.00306 1.00020 0.92833 1.21447 0.97283 0.98364 0.97171 1.21185 0.94874 0.97802 0.99064 1.23409 0.94781 0.89002 0.94153 1.88375 1.67713 1.43775 1.30604 0.90702 0.90852 0.93585 0.92269 0.91061 0.90573 0.91816 0.90222 0.96470 1.01150 0.92881 0.88624 0.95341 0.88372 0.85275 0.83646 0.83382 0.84840 0.90766 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 8.73 71.98 0.63 -3.31 16 2 C 0.10 2.87 1.27 -10.32 -0.01 2.85 16 3 C -0.15 -3.29 8.75 71.98 0.63 -2.66 16 4 C -0.17 -5.79 4.71 31.86 0.15 -5.64 16 5 C 0.06 2.36 3.04 46.37 0.14 2.50 16 6 H 0.07 3.24 7.58 -2.39 -0.02 3.22 16 7 N -0.52 -21.55 4.38 -871.55 -3.81 -25.37 16 8 C 0.21 10.79 4.49 85.56 0.38 11.17 16 9 C -0.52 -29.29 8.66 25.60 0.22 -29.07 16 10 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 11 C 0.01 0.37 5.46 84.65 0.46 0.83 16 12 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 13 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 15 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 17 C 0.09 3.11 3.79 85.56 0.32 3.44 16 18 C -0.08 -2.83 5.17 -19.87 -0.10 -2.93 16 19 C -0.13 -4.63 8.30 22.27 0.18 -4.45 16 20 C -0.13 -4.12 10.05 22.27 0.22 -3.90 16 21 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 22 C -0.12 -3.22 10.05 22.27 0.22 -2.99 16 23 C -0.11 -3.28 9.70 22.27 0.22 -3.06 16 24 C 0.06 1.96 7.27 72.65 0.53 2.49 16 25 O -0.39 -11.91 10.68 -148.98 -1.59 -13.50 16 26 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 32 H 0.06 2.35 7.66 -2.39 -0.02 2.33 16 33 H 0.08 2.56 5.61 -2.39 -0.01 2.55 16 34 H 0.02 0.96 5.43 -2.39 -0.01 0.94 16 35 H -0.03 -1.65 7.21 -2.39 -0.02 -1.66 16 36 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 37 H 0.10 2.85 5.54 -2.39 -0.01 2.83 16 38 H 0.03 1.04 6.84 -2.38 -0.02 1.02 16 39 H 0.10 3.88 7.38 -2.91 -0.02 3.86 16 40 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 41 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 42 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 43 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 44 H 0.07 2.10 5.79 -2.38 -0.01 2.08 16 45 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -64.43 353.08 2.29 -62.14 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.95 Total: 23.09 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 4.43 Total: -37.87 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -3.53 Total: -80.71 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -1.59 Total: -13.50 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.43 2.29 -62.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595638165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.082 kcal (2) G-P(sol) polarization free energy of solvation -64.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds