Wall clock time and date at job start Tue Mar 31 2020 05:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.82474 * 2 1 4 4 C 1.54385 * 109.82672 * 239.02339 * 2 1 3 5 5 C 1.55303 * 102.25071 * 261.84351 * 4 2 1 6 6 H 1.09004 * 111.12443 * 83.78953 * 5 4 2 7 7 N 1.46899 * 111.12583 * 207.94975 * 5 4 2 8 8 C 1.46893 * 111.00216 * 64.33327 * 7 5 4 9 9 C 1.50706 * 109.47501 * 198.88211 * 8 7 5 10 10 H 1.07997 * 119.99722 * 5.33870 * 9 8 7 11 11 C 1.37876 * 120.00068 * 185.33613 * 9 8 7 12 12 N 1.31514 * 120.00137 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99965 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47228 * 60.00090 * 13 11 9 15 15 H 1.48498 * 109.47567 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47119 * 300.00041 * 13 11 9 17 17 C 1.46902 * 111.00276 * 188.29350 * 7 5 4 18 18 C 1.50696 * 109.47379 * 163.11278 * 17 7 5 19 19 C 1.38244 * 119.99742 * 278.13899 * 18 17 7 20 20 C 1.38230 * 120.00119 * 179.78698 * 19 18 17 21 21 C 1.38241 * 119.99697 * 0.44610 * 20 19 18 22 22 C 1.38231 * 120.00261 * 359.80734 * 21 20 19 23 23 C 1.38228 * 120.00688 * 98.41514 * 18 17 7 24 24 C 1.54943 * 100.94484 * 325.86998 * 5 4 2 25 25 O 1.43237 * 109.82870 * 120.89037 * 2 1 3 26 26 H 1.09010 * 109.46765 * 300.56448 * 1 2 3 27 27 H 1.09000 * 109.47237 * 60.55873 * 1 2 3 28 28 H 1.08999 * 109.47355 * 180.56473 * 1 2 3 29 29 H 1.08994 * 109.46950 * 179.43111 * 3 2 1 30 30 H 1.08997 * 109.47203 * 299.43735 * 3 2 1 31 31 H 1.09003 * 109.46797 * 59.43834 * 3 2 1 32 32 H 1.09003 * 110.84837 * 20.03537 * 4 2 1 33 33 H 1.09003 * 110.84473 * 143.65479 * 4 2 1 34 34 H 1.08997 * 109.47358 * 318.88507 * 8 7 5 35 35 H 1.09002 * 109.47331 * 78.88255 * 8 7 5 36 36 H 0.96998 * 120.00310 * 180.02562 * 12 11 9 37 37 H 1.09004 * 109.46656 * 283.11130 * 17 7 5 38 38 H 1.08994 * 109.47229 * 43.10879 * 17 7 5 39 39 H 1.08000 * 119.99517 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.00228 * 180.27561 * 20 19 18 41 41 H 1.08002 * 119.99868 * 179.83527 * 21 20 19 42 42 H 1.08002 * 120.00610 * 180.02562 * 22 21 20 43 43 H 1.08008 * 119.99661 * 359.97438 * 23 18 17 44 44 H 1.09004 * 110.30887 * 277.53153 * 24 5 4 45 45 H 1.08998 * 110.31367 * 155.36167 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 6 2.0537 -0.7475 -1.2452 5 6 2.3680 -2.1575 -0.6751 6 1 1.4729 -2.7790 -0.6486 7 7 3.4401 -2.8102 -1.4383 8 6 4.7041 -2.0736 -1.3059 9 6 5.6348 -2.4677 -2.4239 10 1 5.2895 -3.1263 -3.2071 11 6 6.9270 -1.9875 -2.4468 12 7 7.3473 -1.1851 -1.4933 13 14 8.0803 -2.4754 -3.8328 14 1 7.5099 -2.0325 -5.1304 15 1 9.4019 -1.8300 -3.6276 16 1 8.2457 -3.9511 -3.8427 17 6 3.6015 -4.2112 -1.0269 18 6 4.3882 -4.9551 -2.0751 19 6 3.7528 -5.4344 -3.2054 20 6 4.4751 -6.1130 -4.1690 21 6 5.8311 -6.3204 -3.9979 22 6 6.4655 -5.8458 -2.8652 23 6 5.7439 -5.1634 -1.9036 24 6 2.8406 -1.7976 0.7559 25 8 2.0159 -0.6918 1.1563 26 1 -0.3633 0.5226 0.8850 27 1 -0.3634 0.5051 -0.8949 28 1 -0.3634 -1.0276 0.0101 29 1 3.1388 1.4326 0.0102 30 1 1.6970 1.9524 -0.8950 31 1 1.6805 1.9583 0.8849 32 1 1.2850 -0.8032 -2.0160 33 1 2.9571 -0.2744 -1.6302 34 1 4.5077 -1.0027 -1.3572 35 1 5.1655 -2.3129 -0.3478 36 1 8.2563 -0.8469 -1.5096 37 1 4.1337 -4.2516 -0.0764 38 1 2.6203 -4.6720 -0.9138 39 1 2.6928 -5.2751 -3.3374 40 1 3.9796 -6.4835 -5.0542 41 1 6.3950 -6.8530 -4.7495 42 1 7.5249 -6.0075 -2.7316 43 1 6.2395 -4.7925 -1.0186 44 1 3.8899 -1.5024 0.7447 45 1 2.6918 -2.6432 1.4274 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595638166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:45 Heat of formation + Delta-G solvation = -13.587056 kcal Electronic energy + Delta-G solvation = -24304.754228 eV Core-core repulsion = 21094.153662 eV Total energy + Delta-G solvation = -3210.600567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.87739 -38.60132 -36.11016 -32.87005 -32.58877 -31.50813 -30.14255 -28.97696 -27.32077 -27.10370 -25.35332 -24.31154 -22.67130 -21.78384 -20.53720 -19.86585 -19.04537 -16.90005 -16.14843 -15.58400 -15.47064 -14.87702 -14.62838 -14.42340 -14.25666 -13.87285 -13.43359 -13.19997 -13.13160 -12.78149 -12.68136 -12.40014 -12.14598 -11.93680 -11.89731 -11.75964 -11.47536 -11.31694 -11.06014 -10.93469 -10.76465 -10.62864 -10.42242 -10.27859 -10.17480 -10.03716 -9.70102 -9.31604 -9.12971 -8.43606 -8.09521 -7.79089 -7.34675 -6.01569 -3.97101 2.10695 2.21257 3.34778 3.38787 3.44037 4.02388 4.41765 4.52367 4.90023 4.97131 5.12450 5.28733 5.34810 5.37542 5.40379 5.51039 5.56322 5.61519 5.69929 5.74989 5.82263 5.87666 5.92266 5.93558 6.06730 6.08754 6.11407 6.16547 6.29768 6.32485 6.37510 6.40559 6.45503 6.62184 6.72542 6.80403 7.09334 7.19075 7.23356 7.27028 7.41733 7.46012 7.76582 7.84806 8.02938 8.10783 8.49690 9.08590 9.63173 11.08536 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.005927 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.597776 B = 4723.196089 C = 5800.481901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.099 3.901 3 C -0.153 4.153 4 C -0.137 4.137 5 C 0.057 3.943 6 H 0.083 0.917 7 N -0.517 5.517 8 C 0.188 3.812 9 C -0.490 4.490 10 H 0.071 0.929 11 C 0.059 3.941 12 N -0.900 5.900 13 Si 0.881 3.119 14 H -0.279 1.279 15 H -0.292 1.292 16 H -0.265 1.265 17 C 0.104 3.896 18 C -0.049 4.049 19 C -0.106 4.106 20 C -0.139 4.139 21 C -0.130 4.130 22 C -0.131 4.131 23 C -0.052 4.052 24 C 0.013 3.987 25 O -0.378 6.378 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.030 0.970 35 H 0.000 1.000 36 H 0.260 0.740 37 H 0.035 0.965 38 H 0.062 0.938 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.076 0.924 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.594 -3.822 0.885 10.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.060 3.940 3 C -0.210 4.210 4 C -0.175 4.175 5 C -0.053 4.053 6 H 0.101 0.899 7 N -0.241 5.241 8 C 0.063 3.937 9 C -0.528 4.528 10 H 0.089 0.911 11 C -0.142 4.142 12 N -0.540 5.540 13 Si 0.709 3.291 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.190 1.190 17 C -0.024 4.024 18 C -0.049 4.049 19 C -0.125 4.125 20 C -0.157 4.157 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.071 4.071 24 C -0.065 4.065 25 O -0.297 6.297 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.048 0.952 35 H 0.018 0.982 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.094 0.906 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.618 -3.640 0.664 10.305 hybrid contribution 1.206 -0.043 -0.191 1.222 sum -8.412 -3.684 0.474 9.195 Atomic orbital electron populations 1.22056 0.94629 1.02128 1.01769 1.22059 0.93517 0.92667 0.85790 1.22082 1.02188 0.95172 1.01591 1.23243 1.02690 0.94908 0.96641 1.23346 0.95821 0.95556 0.90596 0.89937 1.62232 1.08538 1.00788 1.52558 1.19909 0.83767 0.93608 0.96416 1.21267 0.95035 1.28081 1.08464 0.91052 1.24874 0.98140 0.95353 0.95848 1.69944 1.17690 1.33388 1.33005 0.86808 0.79858 0.79556 0.82898 1.20510 1.21835 1.19007 1.20882 0.97614 0.89369 0.94499 1.19460 0.93902 0.95864 0.95682 1.20765 0.99302 0.98529 0.93916 1.20852 0.94382 1.01542 0.98960 1.20901 0.94801 1.01469 0.97657 1.20934 0.99039 0.99990 0.94985 1.20859 0.93217 0.93967 0.99034 1.24249 0.96309 0.88928 0.97021 1.88350 1.67333 1.43983 1.30042 0.92441 0.91779 0.92386 0.91775 0.91800 0.92505 0.90380 0.88855 0.95166 0.98247 0.93058 0.94706 0.91930 0.87140 0.87401 0.87585 0.87374 0.86573 0.90576 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.73 37.16 0.32 -1.50 16 2 C 0.10 1.50 1.27 -89.89 -0.11 1.39 16 3 C -0.15 -2.18 8.75 37.16 0.33 -1.86 16 4 C -0.14 -2.24 5.56 -24.78 -0.14 -2.38 16 5 C 0.06 0.97 3.13 -65.47 -0.21 0.76 16 6 H 0.08 1.27 7.87 -51.93 -0.41 0.86 16 7 N -0.52 -10.20 4.49 -226.84 -1.02 -11.22 16 8 C 0.19 4.46 3.25 -4.98 -0.02 4.45 16 9 C -0.49 -12.74 6.21 -34.44 -0.21 -12.95 16 10 H 0.07 1.91 5.93 -52.49 -0.31 1.60 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -25.70 13.29 55.43 0.74 -24.97 16 13 Si 0.88 21.32 29.54 -169.99 -5.02 16.30 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.27 -6.13 6.56 56.52 0.37 -5.76 16 17 C 0.10 1.87 4.88 -4.98 -0.02 1.85 16 18 C -0.05 -0.92 3.44 -104.62 -0.36 -1.28 16 19 C -0.11 -1.87 9.66 -39.58 -0.38 -2.25 16 20 C -0.14 -2.32 10.05 -39.58 -0.40 -2.72 16 21 C -0.13 -2.25 10.05 -39.58 -0.40 -2.64 16 22 C -0.13 -2.47 9.51 -39.58 -0.38 -2.85 16 23 C -0.05 -1.04 6.94 -39.59 -0.27 -1.31 16 24 C 0.01 0.23 6.90 38.18 0.26 0.50 16 25 O -0.38 -6.60 10.68 -35.23 -0.38 -6.98 16 26 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.15 7.82 -51.93 -0.41 0.74 16 33 H 0.09 1.77 5.77 -51.93 -0.30 1.47 16 34 H 0.03 0.78 5.83 -51.93 -0.30 0.48 16 35 H 0.00 0.00 6.71 -51.93 -0.35 -0.35 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.03 0.64 7.69 -51.93 -0.40 0.24 16 38 H 0.06 0.97 7.79 -51.93 -0.40 0.57 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 43 H 0.12 2.42 8.05 -52.48 -0.42 2.00 16 44 H 0.08 1.55 5.78 -51.93 -0.30 1.25 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -28.33 349.32 -9.92 -38.25 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.42 Total: 4.66 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -2.08 Total: -21.31 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.28 Total: -36.19 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.38 Total: -6.98 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.33 -9.92 -38.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595638166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.666 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds