Wall clock time and date at job start Tue Mar 31 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.82474 * 2 1 4 4 C 1.54385 * 109.82672 * 239.02339 * 2 1 3 5 5 C 1.55303 * 102.25071 * 261.84351 * 4 2 1 6 6 H 1.09004 * 111.12443 * 83.78953 * 5 4 2 7 7 N 1.46899 * 111.12583 * 207.94975 * 5 4 2 8 8 C 1.46893 * 111.00216 * 64.33327 * 7 5 4 9 9 C 1.50706 * 109.47501 * 198.88211 * 8 7 5 10 10 H 1.07997 * 119.99722 * 5.33870 * 9 8 7 11 11 C 1.37876 * 120.00068 * 185.33613 * 9 8 7 12 12 N 1.31514 * 120.00137 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99965 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47228 * 60.00090 * 13 11 9 15 15 H 1.48498 * 109.47567 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47119 * 300.00041 * 13 11 9 17 17 C 1.46902 * 111.00276 * 188.29350 * 7 5 4 18 18 C 1.50696 * 109.47379 * 163.11278 * 17 7 5 19 19 C 1.38244 * 119.99742 * 278.13899 * 18 17 7 20 20 C 1.38230 * 120.00119 * 179.78698 * 19 18 17 21 21 C 1.38241 * 119.99697 * 0.44610 * 20 19 18 22 22 C 1.38231 * 120.00261 * 359.80734 * 21 20 19 23 23 C 1.38228 * 120.00688 * 98.41514 * 18 17 7 24 24 C 1.54943 * 100.94484 * 325.86998 * 5 4 2 25 25 O 1.43237 * 109.82870 * 120.89037 * 2 1 3 26 26 H 1.09010 * 109.46765 * 300.56448 * 1 2 3 27 27 H 1.09000 * 109.47237 * 60.55873 * 1 2 3 28 28 H 1.08999 * 109.47355 * 180.56473 * 1 2 3 29 29 H 1.08994 * 109.46950 * 179.43111 * 3 2 1 30 30 H 1.08997 * 109.47203 * 299.43735 * 3 2 1 31 31 H 1.09003 * 109.46797 * 59.43834 * 3 2 1 32 32 H 1.09003 * 110.84837 * 20.03537 * 4 2 1 33 33 H 1.09003 * 110.84473 * 143.65479 * 4 2 1 34 34 H 1.08997 * 109.47358 * 318.88507 * 8 7 5 35 35 H 1.09002 * 109.47331 * 78.88255 * 8 7 5 36 36 H 0.96998 * 120.00310 * 180.02562 * 12 11 9 37 37 H 1.09004 * 109.46656 * 283.11130 * 17 7 5 38 38 H 1.08994 * 109.47229 * 43.10879 * 17 7 5 39 39 H 1.08000 * 119.99517 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.00228 * 180.27561 * 20 19 18 41 41 H 1.08002 * 119.99868 * 179.83527 * 21 20 19 42 42 H 1.08002 * 120.00610 * 180.02562 * 22 21 20 43 43 H 1.08008 * 119.99661 * 359.97438 * 23 18 17 44 44 H 1.09004 * 110.30887 * 277.53153 * 24 5 4 45 45 H 1.08998 * 110.31367 * 155.36167 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 6 2.0537 -0.7475 -1.2452 5 6 2.3680 -2.1575 -0.6751 6 1 1.4729 -2.7790 -0.6486 7 7 3.4401 -2.8102 -1.4383 8 6 4.7041 -2.0736 -1.3059 9 6 5.6348 -2.4677 -2.4239 10 1 5.2895 -3.1263 -3.2071 11 6 6.9270 -1.9875 -2.4468 12 7 7.3473 -1.1851 -1.4933 13 14 8.0803 -2.4754 -3.8328 14 1 7.5099 -2.0325 -5.1304 15 1 9.4019 -1.8300 -3.6276 16 1 8.2457 -3.9511 -3.8427 17 6 3.6015 -4.2112 -1.0269 18 6 4.3882 -4.9551 -2.0751 19 6 3.7528 -5.4344 -3.2054 20 6 4.4751 -6.1130 -4.1690 21 6 5.8311 -6.3204 -3.9979 22 6 6.4655 -5.8458 -2.8652 23 6 5.7439 -5.1634 -1.9036 24 6 2.8406 -1.7976 0.7559 25 8 2.0159 -0.6918 1.1563 26 1 -0.3633 0.5226 0.8850 27 1 -0.3634 0.5051 -0.8949 28 1 -0.3634 -1.0276 0.0101 29 1 3.1388 1.4326 0.0102 30 1 1.6970 1.9524 -0.8950 31 1 1.6805 1.9583 0.8849 32 1 1.2850 -0.8032 -2.0160 33 1 2.9571 -0.2744 -1.6302 34 1 4.5077 -1.0027 -1.3572 35 1 5.1655 -2.3129 -0.3478 36 1 8.2563 -0.8469 -1.5096 37 1 4.1337 -4.2516 -0.0764 38 1 2.6203 -4.6720 -0.9138 39 1 2.6928 -5.2751 -3.3374 40 1 3.9796 -6.4835 -5.0542 41 1 6.3950 -6.8530 -4.7495 42 1 7.5249 -6.0075 -2.7316 43 1 6.2395 -4.7925 -1.0186 44 1 3.8899 -1.5024 0.7447 45 1 2.6918 -2.6432 1.4274 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595638166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:44 Heat of formation + Delta-G solvation = -29.446237 kcal Electronic energy + Delta-G solvation = -24305.441934 eV Core-core repulsion = 21094.153662 eV Total energy + Delta-G solvation = -3211.288272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26051 -39.99525 -37.62396 -34.63493 -34.10201 -32.89439 -31.55335 -30.53428 -29.05197 -28.21341 -26.68185 -25.92233 -24.46451 -23.18711 -21.93028 -21.17338 -20.52888 -18.76633 -17.55240 -17.12568 -16.93321 -16.51391 -16.10126 -15.93015 -15.72957 -15.37357 -14.77608 -14.68719 -14.47948 -14.17803 -14.08779 -13.86975 -13.74011 -13.38911 -13.28894 -13.04258 -12.91611 -12.67963 -12.59657 -12.51672 -12.37158 -12.24329 -11.95865 -11.75302 -11.62611 -11.41134 -11.36019 -11.18663 -10.55001 -10.47960 -9.50801 -9.27480 -9.00051 -8.11291 -6.11428 0.70270 0.80352 1.40437 1.40851 1.48230 2.43469 2.70508 3.08252 3.23984 3.52818 3.60196 3.86276 3.96822 4.06357 4.16699 4.20382 4.21460 4.29919 4.35276 4.45270 4.54484 4.62368 4.69736 4.71701 4.74807 4.83497 4.88921 4.93093 4.98550 5.00137 5.05331 5.08394 5.23545 5.26815 5.30930 5.37857 5.40450 5.45719 5.77220 5.79439 5.84914 6.00925 6.11034 6.17790 6.33531 6.39198 6.64135 6.99680 7.52384 8.98789 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.005927 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.597776 B = 4723.196089 C = 5800.481901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.092 3.908 3 C -0.152 4.152 4 C -0.134 4.134 5 C 0.058 3.942 6 H 0.115 0.885 7 N -0.518 5.518 8 C 0.211 3.789 9 C -0.480 4.480 10 H 0.069 0.931 11 C 0.011 3.989 12 N -0.938 5.938 13 Si 0.929 3.071 14 H -0.280 1.280 15 H -0.296 1.296 16 H -0.248 1.248 17 C 0.104 3.896 18 C -0.065 4.065 19 C -0.109 4.109 20 C -0.135 4.135 21 C -0.134 4.134 22 C -0.145 4.145 23 C -0.075 4.075 24 C 0.020 3.980 25 O -0.391 6.391 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.005 0.995 35 H -0.032 1.032 36 H 0.257 0.743 37 H 0.021 0.979 38 H 0.097 0.903 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.110 0.890 43 H 0.088 0.912 44 H 0.035 0.965 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.160 -5.161 -0.927 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.053 3.947 3 C -0.210 4.210 4 C -0.172 4.172 5 C -0.052 4.052 6 H 0.133 0.867 7 N -0.241 5.241 8 C 0.085 3.915 9 C -0.518 4.518 10 H 0.087 0.913 11 C -0.186 4.186 12 N -0.580 5.580 13 Si 0.756 3.244 14 H -0.205 1.205 15 H -0.223 1.223 16 H -0.172 1.172 17 C -0.023 4.023 18 C -0.065 4.065 19 C -0.127 4.127 20 C -0.153 4.153 21 C -0.152 4.152 22 C -0.164 4.164 23 C -0.094 4.094 24 C -0.059 4.059 25 O -0.310 6.310 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.023 0.977 35 H -0.015 1.015 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.115 0.885 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.151 0.849 42 H 0.128 0.872 43 H 0.107 0.893 44 H 0.053 0.947 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.202 -4.999 -1.153 13.237 hybrid contribution 1.951 0.345 0.381 2.018 sum -10.251 -4.654 -0.772 11.285 Atomic orbital electron populations 1.22010 0.91555 1.03048 1.03202 1.22314 0.95700 0.92303 0.84334 1.22095 1.00192 0.95477 1.03202 1.23210 1.01853 0.94324 0.97793 1.23493 0.95690 0.96287 0.89693 0.86744 1.62147 1.07016 1.01478 1.53465 1.19445 0.85387 0.92518 0.94161 1.21434 0.95221 1.26808 1.08340 0.91334 1.25536 0.99744 0.95599 0.97712 1.70074 1.17805 1.35171 1.34950 0.86026 0.77948 0.80192 0.80269 1.20535 1.22254 1.17164 1.20965 0.99235 0.88339 0.93800 1.19611 0.93626 0.96531 0.96741 1.21063 1.00487 0.97923 0.93255 1.21282 0.94180 1.00181 0.99617 1.21255 0.95527 1.01012 0.97400 1.21099 0.99361 1.00329 0.95581 1.20777 0.94126 0.95650 0.98866 1.24071 0.94266 0.89440 0.98096 1.88338 1.67144 1.44110 1.31421 0.91778 0.89627 0.91711 0.94906 0.89715 0.91363 0.88022 0.92405 0.97722 1.01458 0.93448 0.96022 0.88478 0.84956 0.83989 0.84874 0.87194 0.89327 0.94664 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.73 71.98 0.63 -2.38 16 2 C 0.09 2.69 1.27 -10.32 -0.01 2.68 16 3 C -0.15 -4.31 8.75 71.98 0.63 -3.68 16 4 C -0.13 -4.27 5.56 31.86 0.18 -4.09 16 5 C 0.06 1.91 3.13 46.37 0.15 2.05 16 6 H 0.11 3.11 7.87 -2.39 -0.02 3.10 16 7 N -0.52 -20.35 4.49 -871.58 -3.91 -24.26 16 8 C 0.21 10.51 3.25 85.56 0.28 10.78 16 9 C -0.48 -25.56 6.21 25.60 0.16 -25.40 16 10 H 0.07 3.66 5.93 -2.91 -0.02 3.65 16 11 C 0.01 0.62 5.46 84.65 0.46 1.08 16 12 N -0.94 -56.06 13.29 21.45 0.28 -55.78 16 13 Si 0.93 44.23 29.54 68.60 2.03 46.26 16 14 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 15 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 16 H -0.25 -10.97 6.56 99.48 0.65 -10.32 16 17 C 0.10 3.67 4.88 85.56 0.42 4.09 16 18 C -0.06 -2.39 3.44 -19.87 -0.07 -2.46 16 19 C -0.11 -3.50 9.66 22.27 0.22 -3.28 16 20 C -0.13 -4.00 10.05 22.27 0.22 -3.78 16 21 C -0.13 -4.25 10.05 22.27 0.22 -4.03 16 22 C -0.15 -5.36 9.51 22.27 0.21 -5.15 16 23 C -0.08 -3.04 6.94 22.27 0.15 -2.88 16 24 C 0.02 0.70 6.90 72.65 0.50 1.21 16 25 O -0.39 -13.54 10.68 -148.98 -1.59 -15.13 16 26 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.10 2.72 7.82 -2.39 -0.02 2.70 16 33 H 0.06 2.27 5.77 -2.39 -0.01 2.26 16 34 H 0.00 0.27 5.83 -2.39 -0.01 0.25 16 35 H -0.03 -1.80 6.71 -2.39 -0.02 -1.81 16 36 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.02 0.82 7.69 -2.38 -0.02 0.80 16 38 H 0.10 2.74 7.79 -2.39 -0.02 2.72 16 39 H 0.13 3.64 8.06 -2.91 -0.02 3.61 16 40 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 41 H 0.13 3.46 8.06 -2.91 -0.02 3.43 16 42 H 0.11 3.88 8.06 -2.91 -0.02 3.86 16 43 H 0.09 3.95 8.05 -2.91 -0.02 3.93 16 44 H 0.04 1.54 5.78 -2.38 -0.01 1.53 16 45 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -63.63 349.32 2.05 -61.59 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.89 Total: 22.57 kcal Atomic # 6 Polarization: -39.59 SS G_CDS: 4.35 Total: -35.25 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -3.63 Total: -80.04 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -1.59 Total: -15.13 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -63.63 2.05 -61.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595638166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.139 kcal (2) G-P(sol) polarization free energy of solvation -63.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds