Wall clock time and date at job start Tue Mar 31 2020 06:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35896 * 117.00816 * 2 1 4 4 C 1.38767 * 120.03909 * 359.97438 * 3 2 1 5 5 C 1.38117 * 119.93801 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.06847 * 359.97438 * 5 4 3 7 7 C 1.38179 * 120.14526 * 0.04407 * 6 5 4 8 8 C 1.38471 * 119.99005 * 180.02562 * 3 2 1 9 9 C 1.51162 * 131.92482 * 0.05149 * 8 3 2 10 10 N 1.48057 * 105.74129 * 197.48764 * 9 8 3 11 11 C 1.46898 * 111.00167 * 213.01739 * 10 9 8 12 12 C 1.53000 * 109.47092 * 197.39015 * 11 10 9 13 13 C 1.53007 * 109.47051 * 174.05183 * 12 11 10 14 14 C 1.52999 * 109.47190 * 294.05263 * 12 11 10 15 15 C 1.53000 * 109.46979 * 54.05615 * 12 11 10 16 16 C 1.50708 * 109.47130 * 180.02562 * 15 12 11 17 17 H 1.07998 * 119.99606 * 359.97438 * 16 15 12 18 18 C 1.37869 * 119.99962 * 179.97438 * 16 15 12 19 19 N 1.31521 * 120.00116 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00375 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.46960 * 89.99626 * 20 18 16 22 22 H 1.48492 * 109.47147 * 209.99708 * 20 18 16 23 23 H 1.48497 * 109.46674 * 329.99722 * 20 18 16 24 24 C 1.48057 * 103.87603 * 332.36874 * 10 9 8 25 25 H 1.08992 * 109.47416 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46665 * 300.00401 * 1 2 3 27 27 H 1.09002 * 109.46807 * 59.99813 * 1 2 3 28 28 H 1.07999 * 120.02905 * 359.97438 * 4 3 2 29 29 H 1.08011 * 119.96683 * 180.02562 * 5 4 3 30 30 H 1.07996 * 119.92818 * 180.02562 * 6 5 4 31 31 H 1.09000 * 110.20982 * 78.39438 * 9 8 3 32 32 H 1.09004 * 110.21650 * 316.57856 * 9 8 3 33 33 H 1.09006 * 109.46984 * 317.38496 * 11 10 9 34 34 H 1.09003 * 109.47756 * 77.38662 * 11 10 9 35 35 H 1.09001 * 109.46979 * 56.51939 * 13 12 11 36 36 H 1.08998 * 109.47053 * 176.51877 * 13 12 11 37 37 H 1.08996 * 109.47058 * 296.52016 * 13 12 11 38 38 H 1.08995 * 109.46771 * 69.41061 * 14 12 11 39 39 H 1.08999 * 109.47251 * 189.40834 * 14 12 11 40 40 H 1.08999 * 109.46718 * 309.41288 * 14 12 11 41 41 H 1.09002 * 109.47065 * 299.99950 * 15 12 11 42 42 H 1.08995 * 109.47616 * 60.00027 * 15 12 11 43 43 H 0.96994 * 120.00235 * 179.97438 * 19 18 16 44 44 H 1.08998 * 110.20596 * 146.64743 * 24 10 9 45 45 H 1.09002 * 110.20553 * 268.46617 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2913 2.3752 -0.0005 5 6 1.9207 3.6046 0.0000 6 6 3.3017 3.6760 0.0016 7 6 4.0564 2.5185 0.0018 8 6 3.4289 1.2828 -0.0005 9 6 4.4961 0.2122 -0.0022 10 7 5.7425 0.8867 0.4262 11 6 6.9150 0.2921 -0.2292 12 6 8.1813 0.6912 0.5311 13 6 9.3848 -0.0456 -0.0604 14 6 8.3962 2.2010 0.4069 15 6 8.0294 0.3173 2.0069 16 6 9.2765 0.7111 2.7558 17 1 10.0956 1.1806 2.2315 18 6 9.3716 0.4718 4.1103 19 7 10.4601 0.8150 4.7639 20 14 7.9550 -0.3410 5.0171 21 1 8.1346 -1.8149 4.9960 22 1 7.9297 0.1345 6.4236 23 1 6.6747 0.0113 4.3523 24 6 5.5511 2.2912 -0.0014 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2127 2.3201 -0.0014 29 1 1.3336 4.5113 0.0000 30 1 3.7915 4.6385 0.0024 31 1 4.6157 -0.1987 -1.0047 32 1 4.2361 -0.5799 0.7001 33 1 6.8189 -0.7938 -0.2301 34 1 6.9790 0.6521 -1.2560 35 1 9.4564 0.1723 -1.1260 36 1 10.2950 0.2850 0.4400 37 1 9.2604 -1.1188 0.0835 38 1 7.6260 2.7252 0.9726 39 1 9.3780 2.4620 0.8018 40 1 8.3375 2.4912 -0.6421 41 1 7.1720 0.8421 2.4282 42 1 7.8763 -0.7582 2.0954 43 1 10.5269 0.6471 5.7168 44 1 6.0354 2.9683 0.7022 45 1 5.9548 2.4380 -1.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600207846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:00 Heat of formation + Delta-G solvation = -0.594393 kcal Electronic energy + Delta-G solvation = -23545.865486 eV Core-core repulsion = 20335.828324 eV Total energy + Delta-G solvation = -3210.037162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76771 -38.95237 -37.25320 -35.33374 -32.24634 -30.89608 -30.69290 -27.90148 -27.65845 -27.48206 -26.17493 -25.71090 -22.65168 -21.94107 -21.35409 -21.02048 -18.00826 -17.55311 -16.67528 -16.49042 -15.98160 -15.75123 -15.20353 -14.82509 -14.71312 -14.10221 -13.61020 -13.42456 -13.14634 -13.02496 -12.81243 -12.54087 -12.33763 -12.29273 -12.13496 -11.89410 -11.68651 -11.26420 -11.19008 -11.01201 -10.98010 -10.89344 -10.83474 -10.35374 -10.16136 -9.71256 -9.53681 -9.31603 -8.85300 -8.74893 -8.36424 -8.27103 -7.94346 -5.88103 -3.82746 1.19253 1.35511 3.13737 3.44027 3.51358 3.61953 3.62361 4.18104 4.36705 4.58087 4.62378 4.76816 4.88910 4.91376 5.10806 5.24461 5.28468 5.38224 5.40165 5.47622 5.55213 5.59371 5.64544 5.73656 5.87583 5.96090 6.01891 6.10130 6.17506 6.21777 6.32458 6.38615 6.42838 6.47377 6.65025 6.72085 6.78916 7.02121 7.05226 7.18783 7.25528 7.26843 7.40011 7.55537 7.79616 8.01514 8.72552 9.18408 9.77010 11.25267 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017647 B = 0.004413 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.270861 B = 6343.903865 C = 6821.531471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.144 3.856 4 C -0.211 4.211 5 C -0.081 4.081 6 C -0.138 4.138 7 C -0.057 4.057 8 C -0.132 4.132 9 C 0.085 3.915 10 N -0.489 5.489 11 C 0.055 3.945 12 C -0.046 4.046 13 C -0.128 4.128 14 C -0.131 4.131 15 C 0.006 3.994 16 C -0.507 4.507 17 H 0.073 0.927 18 C 0.064 3.936 19 N -0.911 5.911 20 Si 0.872 3.128 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.260 1.260 24 C 0.072 3.928 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.034 0.966 42 H 0.004 0.996 43 H 0.259 0.741 44 H 0.104 0.896 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.321 2.570 -13.364 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.098 3.902 4 C -0.230 4.230 5 C -0.099 4.099 6 C -0.157 4.157 7 C -0.058 4.058 8 C -0.134 4.134 9 C -0.042 4.042 10 N -0.211 5.211 11 C -0.073 4.073 12 C -0.047 4.047 13 C -0.186 4.186 14 C -0.188 4.188 15 C -0.032 4.032 16 C -0.545 4.545 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.551 5.551 20 Si 0.700 3.300 21 H -0.207 1.207 22 H -0.219 1.219 23 H -0.184 1.184 24 C -0.056 4.056 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.022 0.978 43 H 0.069 0.931 44 H 0.122 0.878 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.046 2.299 -12.617 22.961 hybrid contribution -1.138 -0.282 -0.190 1.188 sum -20.184 2.017 -12.807 23.989 Atomic orbital electron populations 1.23033 0.78701 1.03832 1.01162 1.86108 1.21097 1.26973 1.88722 1.18367 0.90375 0.84370 0.97069 1.21090 0.99701 0.92153 1.10072 1.20816 0.94162 0.96929 0.97982 1.20423 0.93315 0.97545 1.04432 1.20711 0.96193 0.92571 0.96276 1.19876 0.90802 0.96728 1.05958 1.21495 0.87537 0.95499 0.99680 1.65298 1.01367 1.00999 1.53467 1.22610 0.90879 0.99074 0.94706 1.20384 0.91234 0.95164 0.97913 1.21746 0.99365 0.99657 0.97785 1.21956 1.02898 0.95807 0.98161 1.19526 0.97754 0.95592 0.90285 1.21271 1.01258 1.38875 0.93052 0.90863 1.24984 0.95339 0.95516 0.97711 1.69923 1.27340 1.49097 1.08783 0.86882 0.84588 0.79754 0.78810 1.20741 1.21902 1.18379 1.22037 0.90222 0.92927 1.00369 0.88338 0.92713 0.92835 0.85399 0.85582 0.85717 0.92722 0.89271 0.91151 0.95011 0.95134 0.91189 0.93604 0.92439 0.91924 0.95482 0.94808 0.97811 0.93113 0.87830 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.93 10.48 -19.41 -0.20 -4.13 16 3 C 0.14 1.92 6.68 -39.30 -0.26 1.65 16 4 C -0.21 -2.34 9.04 -39.43 -0.36 -2.70 16 5 C -0.08 -0.86 10.04 -39.61 -0.40 -1.26 16 6 C -0.14 -1.67 10.04 -39.58 -0.40 -2.07 16 7 C -0.06 -0.81 6.26 -104.27 -0.65 -1.46 16 8 C -0.13 -1.96 6.22 -104.18 -0.65 -2.61 16 9 C 0.09 1.30 6.49 -4.11 -0.03 1.28 16 10 N -0.49 -8.27 4.36 -234.91 -1.03 -9.29 16 11 C 0.06 0.91 3.93 -3.83 -0.02 0.90 16 12 C -0.05 -0.90 0.61 -154.51 -0.09 -1.00 16 13 C -0.13 -2.37 8.14 37.16 0.30 -2.07 16 14 C -0.13 -2.43 6.93 37.16 0.26 -2.17 16 15 C 0.01 0.14 2.87 -27.88 -0.08 0.06 16 16 C -0.51 -14.23 8.34 -34.44 -0.29 -14.52 16 17 H 0.07 2.18 5.97 -52.49 -0.31 1.87 16 18 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 19 N -0.91 -28.54 13.96 55.43 0.77 -27.77 16 20 Si 0.87 22.65 27.47 -169.99 -4.67 17.98 16 21 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 23 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 24 C 0.07 1.07 5.01 -4.10 -0.02 1.05 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.38 7.66 -51.92 -0.40 -0.02 16 27 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 29 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.05 0.76 7.81 -51.93 -0.41 0.36 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.07 1.14 7.98 -51.93 -0.41 0.73 16 34 H 0.03 0.47 7.44 -51.93 -0.39 0.09 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 1.45 6.74 -51.93 -0.35 1.10 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.07 5.35 -51.93 -0.28 0.79 16 39 H 0.06 1.28 6.93 -51.93 -0.36 0.92 16 40 H 0.03 0.42 8.09 -51.93 -0.42 0.00 16 41 H 0.03 0.85 6.51 -51.93 -0.34 0.52 16 42 H 0.00 0.09 7.57 -51.93 -0.39 -0.30 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.10 1.62 5.96 -51.93 -0.31 1.31 16 45 H 0.06 0.86 7.41 -51.93 -0.38 0.47 16 LS Contribution 345.25 15.07 5.20 5.20 Total: -1.00 -32.46 345.25 -8.89 -41.35 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.18 Total: -1.43 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -1.78 Total: -21.91 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.25 Total: -37.06 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.20 Total: -4.13 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.46 -8.89 -41.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600207846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.752 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds