Wall clock time and date at job start Tue Mar 31 2020 06:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35896 * 117.00816 * 2 1 4 4 C 1.38767 * 120.03909 * 359.97438 * 3 2 1 5 5 C 1.38117 * 119.93801 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.06847 * 359.97438 * 5 4 3 7 7 C 1.38179 * 120.14526 * 0.04407 * 6 5 4 8 8 C 1.38471 * 119.99005 * 180.02562 * 3 2 1 9 9 C 1.51162 * 131.92482 * 0.05149 * 8 3 2 10 10 N 1.48057 * 105.74129 * 197.48764 * 9 8 3 11 11 C 1.46898 * 111.00167 * 213.01739 * 10 9 8 12 12 C 1.53000 * 109.47092 * 197.39015 * 11 10 9 13 13 C 1.53007 * 109.47051 * 174.05183 * 12 11 10 14 14 C 1.52999 * 109.47190 * 294.05263 * 12 11 10 15 15 C 1.53000 * 109.46979 * 54.05615 * 12 11 10 16 16 C 1.50708 * 109.47130 * 180.02562 * 15 12 11 17 17 H 1.07998 * 119.99606 * 359.97438 * 16 15 12 18 18 C 1.37869 * 119.99962 * 179.97438 * 16 15 12 19 19 N 1.31521 * 120.00116 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00375 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.46960 * 89.99626 * 20 18 16 22 22 H 1.48492 * 109.47147 * 209.99708 * 20 18 16 23 23 H 1.48497 * 109.46674 * 329.99722 * 20 18 16 24 24 C 1.48057 * 103.87603 * 332.36874 * 10 9 8 25 25 H 1.08992 * 109.47416 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46665 * 300.00401 * 1 2 3 27 27 H 1.09002 * 109.46807 * 59.99813 * 1 2 3 28 28 H 1.07999 * 120.02905 * 359.97438 * 4 3 2 29 29 H 1.08011 * 119.96683 * 180.02562 * 5 4 3 30 30 H 1.07996 * 119.92818 * 180.02562 * 6 5 4 31 31 H 1.09000 * 110.20982 * 78.39438 * 9 8 3 32 32 H 1.09004 * 110.21650 * 316.57856 * 9 8 3 33 33 H 1.09006 * 109.46984 * 317.38496 * 11 10 9 34 34 H 1.09003 * 109.47756 * 77.38662 * 11 10 9 35 35 H 1.09001 * 109.46979 * 56.51939 * 13 12 11 36 36 H 1.08998 * 109.47053 * 176.51877 * 13 12 11 37 37 H 1.08996 * 109.47058 * 296.52016 * 13 12 11 38 38 H 1.08995 * 109.46771 * 69.41061 * 14 12 11 39 39 H 1.08999 * 109.47251 * 189.40834 * 14 12 11 40 40 H 1.08999 * 109.46718 * 309.41288 * 14 12 11 41 41 H 1.09002 * 109.47065 * 299.99950 * 15 12 11 42 42 H 1.08995 * 109.47616 * 60.00027 * 15 12 11 43 43 H 0.96994 * 120.00235 * 179.97438 * 19 18 16 44 44 H 1.08998 * 110.20596 * 146.64743 * 24 10 9 45 45 H 1.09002 * 110.20553 * 268.46617 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2913 2.3752 -0.0005 5 6 1.9207 3.6046 0.0000 6 6 3.3017 3.6760 0.0016 7 6 4.0564 2.5185 0.0018 8 6 3.4289 1.2828 -0.0005 9 6 4.4961 0.2122 -0.0022 10 7 5.7425 0.8867 0.4262 11 6 6.9150 0.2921 -0.2292 12 6 8.1813 0.6912 0.5311 13 6 9.3848 -0.0456 -0.0604 14 6 8.3962 2.2010 0.4069 15 6 8.0294 0.3173 2.0069 16 6 9.2765 0.7111 2.7558 17 1 10.0956 1.1806 2.2315 18 6 9.3716 0.4718 4.1103 19 7 10.4601 0.8150 4.7639 20 14 7.9550 -0.3410 5.0171 21 1 8.1346 -1.8149 4.9960 22 1 7.9297 0.1345 6.4236 23 1 6.6747 0.0113 4.3523 24 6 5.5511 2.2912 -0.0014 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2127 2.3201 -0.0014 29 1 1.3336 4.5113 0.0000 30 1 3.7915 4.6385 0.0024 31 1 4.6157 -0.1987 -1.0047 32 1 4.2361 -0.5799 0.7001 33 1 6.8189 -0.7938 -0.2301 34 1 6.9790 0.6521 -1.2560 35 1 9.4564 0.1723 -1.1260 36 1 10.2950 0.2850 0.4400 37 1 9.2604 -1.1188 0.0835 38 1 7.6260 2.7252 0.9726 39 1 9.3780 2.4620 0.8018 40 1 8.3375 2.4912 -0.6421 41 1 7.1720 0.8421 2.4282 42 1 7.8763 -0.7582 2.0954 43 1 10.5269 0.6471 5.7168 44 1 6.0354 2.9683 0.7022 45 1 5.9548 2.4380 -1.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600207846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:00 Heat of formation + Delta-G solvation = -20.572301 kcal Electronic energy + Delta-G solvation = -23546.731793 eV Core-core repulsion = 20335.828324 eV Total energy + Delta-G solvation = -3210.903469 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.73739 -40.01287 -38.44629 -36.59970 -34.39550 -31.95534 -31.70954 -29.76348 -28.82094 -28.34811 -27.52614 -26.90130 -24.46505 -23.24022 -22.32827 -21.99984 -19.51880 -18.82823 -18.50041 -17.47512 -16.84603 -16.69106 -16.43252 -16.12682 -15.84834 -15.76900 -15.10901 -14.65461 -14.49064 -14.25879 -14.18325 -13.86940 -13.70741 -13.56930 -13.24420 -13.15424 -12.82466 -12.78607 -12.74451 -12.39709 -12.26917 -12.11765 -11.94927 -11.86795 -11.73605 -11.68486 -11.26346 -10.96913 -10.74337 -10.64904 -9.94531 -9.19494 -9.05898 -8.18442 -6.15965 0.27843 0.45117 1.35105 1.38114 1.52978 2.38745 2.42953 2.71939 3.00955 3.18286 3.40554 3.59290 4.02762 4.05660 4.14297 4.21386 4.32043 4.33672 4.39484 4.42317 4.45478 4.53474 4.56928 4.66497 4.73044 4.75564 4.80208 4.82299 4.90473 4.96574 5.02492 5.14980 5.21442 5.30462 5.43067 5.45383 5.50163 5.54498 5.59750 5.67462 5.78770 5.80231 5.89946 5.94037 6.15846 6.44555 6.47139 6.91865 7.46694 8.98005 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017647 B = 0.004413 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.270861 B = 6343.903865 C = 6821.531471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.132 3.868 4 C -0.209 4.209 5 C -0.075 4.075 6 C -0.147 4.147 7 C -0.075 4.075 8 C -0.162 4.162 9 C 0.091 3.909 10 N -0.517 5.517 11 C 0.064 3.936 12 C -0.048 4.048 13 C -0.123 4.123 14 C -0.124 4.124 15 C 0.014 3.986 16 C -0.499 4.499 17 H 0.045 0.955 18 C 0.005 3.995 19 N -0.956 5.956 20 Si 0.934 3.066 21 H -0.273 1.273 22 H -0.290 1.290 23 H -0.254 1.254 24 C 0.075 3.925 25 H 0.115 0.885 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.157 0.843 29 H 0.160 0.840 30 H 0.142 0.858 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.032 0.968 40 H 0.060 0.940 41 H 0.022 0.978 42 H -0.003 1.003 43 H 0.260 0.740 44 H 0.090 0.910 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.381 2.923 -14.924 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.086 3.914 4 C -0.227 4.227 5 C -0.093 4.093 6 C -0.165 4.165 7 C -0.075 4.075 8 C -0.163 4.163 9 C -0.036 4.036 10 N -0.240 5.240 11 C -0.063 4.063 12 C -0.049 4.049 13 C -0.181 4.181 14 C -0.181 4.181 15 C -0.023 4.023 16 C -0.538 4.538 17 H 0.063 0.937 18 C -0.191 4.191 19 N -0.599 5.599 20 Si 0.760 3.240 21 H -0.199 1.199 22 H -0.216 1.216 23 H -0.178 1.178 24 C -0.052 4.052 25 H 0.133 0.867 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.175 0.825 29 H 0.178 0.822 30 H 0.160 0.840 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.016 0.984 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.123 2.647 -14.192 26.417 hybrid contribution -0.227 -0.350 0.255 0.489 sum -22.350 2.297 -13.937 26.439 Atomic orbital electron populations 1.23339 0.76425 1.05456 1.02343 1.86075 1.23537 1.26973 1.88675 1.18581 0.90215 0.85461 0.97153 1.21469 1.01132 0.91486 1.08661 1.21251 0.93825 0.98149 0.96090 1.20737 0.94142 0.97587 1.04040 1.20771 0.95719 0.93329 0.97724 1.19978 0.91658 0.96649 1.08044 1.21364 0.87248 0.95348 0.99645 1.65160 1.02011 1.02256 1.54546 1.22432 0.89285 0.99327 0.95287 1.20350 0.93396 0.95837 0.95269 1.21670 0.97458 0.99430 0.99543 1.21869 1.00900 0.95233 1.00097 1.19398 0.94944 0.94730 0.93238 1.21593 1.01883 1.37159 0.93128 0.93696 1.25799 0.97726 0.96634 0.98911 1.70059 1.29499 1.51188 1.09154 0.85889 0.81579 0.79048 0.77527 1.19869 1.21585 1.17830 1.21944 0.91156 0.91542 1.00518 0.86699 0.91801 0.91230 0.82538 0.82206 0.84045 0.91746 0.90825 0.90891 0.92479 0.91672 0.94306 0.93548 0.92844 0.94909 0.92089 0.95957 0.98439 0.93081 0.89194 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.92 10.48 -92.38 -0.97 -8.89 16 3 C 0.13 3.29 6.68 22.45 0.15 3.44 16 4 C -0.21 -3.98 9.04 22.37 0.20 -3.78 16 5 C -0.08 -1.35 10.04 22.25 0.22 -1.13 16 6 C -0.15 -3.20 10.04 22.27 0.22 -2.98 16 7 C -0.07 -2.03 6.26 -19.64 -0.12 -2.16 16 8 C -0.16 -4.64 6.22 -19.58 -0.12 -4.77 16 9 C 0.09 2.73 6.49 85.48 0.55 3.29 16 10 N -0.52 -17.04 4.36 -897.11 -3.92 -20.95 16 11 C 0.06 2.03 3.93 86.30 0.34 2.37 16 12 C -0.05 -1.84 0.61 -52.18 -0.03 -1.87 16 13 C -0.12 -4.50 8.14 71.98 0.59 -3.91 16 14 C -0.12 -4.54 6.93 71.98 0.50 -4.04 16 15 C 0.01 0.70 2.87 29.85 0.09 0.78 16 16 C -0.50 -28.89 8.34 25.60 0.21 -28.68 16 17 H 0.04 2.81 5.97 -2.91 -0.02 2.79 16 18 C 0.00 0.27 5.47 84.65 0.46 0.74 16 19 N -0.96 -61.68 13.96 21.45 0.30 -61.38 16 20 Si 0.93 47.55 27.47 68.60 1.88 49.43 16 21 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 23 H -0.25 -12.62 6.54 99.48 0.65 -11.97 16 24 C 0.08 2.17 5.01 85.49 0.43 2.60 16 25 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 0.70 7.66 -2.38 -0.02 0.68 16 27 H 0.07 0.66 7.66 -2.39 -0.02 0.65 16 28 H 0.16 1.97 6.30 -2.91 -0.02 1.95 16 29 H 0.16 1.73 8.06 -2.90 -0.02 1.71 16 30 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.06 1.73 7.81 -2.39 -0.02 1.71 16 32 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.07 2.24 7.98 -2.38 -0.02 2.22 16 34 H 0.06 1.52 7.44 -2.39 -0.02 1.50 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.63 6.74 -2.39 -0.02 1.62 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 1.98 5.35 -2.39 -0.01 1.97 16 39 H 0.03 1.36 6.93 -2.39 -0.02 1.34 16 40 H 0.06 1.79 8.09 -2.39 -0.02 1.77 16 41 H 0.02 1.13 6.51 -2.39 -0.02 1.11 16 42 H 0.00 -0.14 7.57 -2.39 -0.02 -0.15 16 43 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 44 H 0.09 2.78 5.96 -2.39 -0.01 2.76 16 45 H 0.08 1.91 7.41 -2.39 -0.02 1.89 16 Total: -1.00 -72.09 345.25 3.02 -69.08 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.91 Total: 11.45 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 4.80 Total: -38.74 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -3.62 Total: -82.33 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.97 Total: -8.89 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.88 Total: 49.43 kcal Total: -72.09 3.02 -69.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600207846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.507 kcal (2) G-P(sol) polarization free energy of solvation -72.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds