Wall clock time and date at job start Tue Mar 31 2020 06:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 C 1.52994 * 109.47546 * 239.99409 * 2 1 3 5 5 C 1.50711 * 109.47063 * 60.00051 * 4 2 1 6 6 H 1.07999 * 119.99219 * 0.02562 * 5 4 2 7 7 C 1.37868 * 120.00034 * 179.97438 * 5 4 2 8 8 N 1.31521 * 120.00329 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00060 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46957 * 89.99830 * 9 7 5 11 11 H 1.48494 * 109.47577 * 209.99904 * 9 7 5 12 12 H 1.48501 * 109.47041 * 330.00482 * 9 7 5 13 13 C 1.52998 * 109.46769 * 119.99453 * 2 1 3 14 14 N 1.46906 * 109.47216 * 174.21560 * 13 2 1 15 15 C 1.47155 * 111.00171 * 208.98378 * 14 13 2 16 16 C 1.52890 * 108.50134 * 165.36031 * 15 14 13 17 17 C 1.50709 * 109.95264 * 50.40964 * 16 15 14 18 18 C 1.39161 * 118.48976 * 163.24276 * 17 16 15 19 19 O 1.35907 * 119.88163 * 359.57239 * 18 17 16 20 20 C 1.38531 * 120.23378 * 179.59832 * 18 17 16 21 21 C 1.38174 * 119.76133 * 359.97438 * 20 18 17 22 22 C 1.38042 * 119.93057 * 0.09483 * 21 20 18 23 23 C 1.37744 * 121.68614 * 342.99848 * 17 16 15 24 24 C 1.46622 * 110.99811 * 85.96965 * 14 13 2 25 25 H 1.09001 * 109.46862 * 54.74405 * 1 2 3 26 26 H 1.08996 * 109.47044 * 174.73810 * 1 2 3 27 27 H 1.08992 * 109.47509 * 294.74166 * 1 2 3 28 28 H 1.08999 * 109.47313 * 74.34336 * 3 2 1 29 29 H 1.08999 * 109.47136 * 194.34361 * 3 2 1 30 30 H 1.09002 * 109.46736 * 314.34173 * 3 2 1 31 31 H 1.08993 * 109.47395 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.47285 * 300.00844 * 4 2 1 33 33 H 0.96994 * 120.00071 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.47687 * 294.21689 * 13 2 1 35 35 H 1.09008 * 109.47242 * 54.21924 * 13 2 1 36 36 H 1.09003 * 109.63145 * 285.04995 * 15 14 13 37 37 H 1.09003 * 109.63445 * 45.64834 * 15 14 13 38 38 H 1.08995 * 109.39041 * 290.25996 * 16 15 14 39 39 H 1.08999 * 109.30767 * 170.50444 * 16 15 14 40 40 H 0.96702 * 113.99551 * 90.00322 * 19 18 17 41 41 H 1.08000 * 120.12092 * 180.02562 * 20 18 17 42 42 H 1.07995 * 120.03521 * 180.11358 * 21 20 18 43 43 H 1.08000 * 119.74644 * 179.97438 * 22 21 20 44 44 H 1.09007 * 109.26891 * 296.18220 * 24 14 13 45 45 H 1.09007 * 109.27099 * 55.64872 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4797 6 1 0.9172 0.8673 -2.3806 7 6 1.8714 -0.4818 -3.7319 8 7 2.6275 -1.5511 -3.8525 9 14 1.2494 0.3990 -5.2572 10 1 2.2277 1.4408 -5.6607 11 1 1.0848 -0.5798 -6.3617 12 1 -0.0589 1.0366 -4.9617 13 6 2.0399 -0.7211 1.2493 14 7 3.5023 -0.8433 1.1817 15 6 3.9659 -2.0373 1.9060 16 6 5.4142 -2.3170 1.5038 17 6 6.2370 -1.0616 1.6389 18 6 7.6236 -1.1765 1.6660 19 8 8.2033 -2.4027 1.5802 20 6 8.4152 -0.0454 1.7806 21 6 7.8232 1.2001 1.8677 22 6 6.4475 1.3121 1.8422 23 6 5.6507 0.1815 1.7299 24 6 4.1549 0.3578 1.7120 25 1 -0.3633 0.5932 -0.8392 26 1 -0.3633 -1.0233 -0.0942 27 1 -0.3634 0.4301 0.9332 28 1 1.8996 1.8775 0.9895 29 1 3.0998 1.4532 -0.2546 30 1 1.4839 2.0244 -0.7350 31 1 3.1300 -0.7217 -1.2488 32 1 1.6767 -1.7490 -1.2491 33 1 2.8625 -1.8821 -4.7334 34 1 1.7636 -0.1510 2.1362 35 1 1.5945 -1.7146 1.3027 36 1 3.9124 -1.8580 2.9799 37 1 3.3412 -2.8910 1.6428 38 1 5.4428 -2.6589 0.4692 39 1 5.8253 -3.0907 2.1522 40 1 8.3942 -2.6850 0.6752 41 1 9.4911 -0.1366 1.8011 42 1 8.4360 2.0850 1.9554 43 1 5.9879 2.2871 1.9109 44 1 3.9009 1.2121 1.0844 45 1 3.8021 0.5405 2.7271 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600209000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:09 Heat of formation + Delta-G solvation = -23.392419 kcal Electronic energy + Delta-G solvation = -23904.191526 eV Core-core repulsion = 20693.165767 eV Total energy + Delta-G solvation = -3211.025759 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.30323 -38.30498 -36.64211 -35.39625 -32.51997 -31.68313 -31.06238 -28.56286 -27.04181 -26.76078 -26.00178 -23.62598 -23.03596 -22.36635 -21.91483 -19.44427 -18.10754 -17.71241 -16.25141 -16.07884 -15.94902 -15.46695 -14.79062 -14.62409 -14.42481 -14.05569 -13.53777 -13.47715 -13.08132 -12.91362 -12.41867 -12.32800 -12.16827 -12.05812 -11.79420 -11.55078 -11.50331 -11.25963 -11.00891 -10.92049 -10.87361 -10.69013 -10.29219 -10.21405 -10.17500 -9.94896 -9.56311 -8.95355 -8.70406 -8.50235 -8.41725 -8.20199 -7.75959 -5.84875 -3.84095 1.31807 1.43145 3.37841 3.44533 3.46812 3.65936 4.21570 4.32046 4.56461 4.81638 4.84555 5.07861 5.21707 5.38674 5.47899 5.50052 5.50903 5.57328 5.63528 5.76492 5.83864 5.89603 5.94535 5.96171 6.04683 6.09914 6.18423 6.27059 6.35425 6.39827 6.45506 6.49056 6.55171 6.67506 6.76868 6.79870 6.87893 7.10711 7.24089 7.36602 7.47277 7.61800 7.70025 7.89789 8.11061 8.28651 8.62435 9.23672 9.77503 11.26274 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016153 B = 0.004755 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.995854 B = 5887.636998 C = 6391.623257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.126 4.126 4 C 0.046 3.954 5 C -0.507 4.507 6 H 0.053 0.947 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.068 3.932 14 N -0.514 5.514 15 C 0.054 3.946 16 C -0.072 4.072 17 C -0.086 4.086 18 C 0.099 3.901 19 O -0.500 6.500 20 C -0.151 4.151 21 C -0.111 4.111 22 C -0.126 4.126 23 C -0.054 4.054 24 C 0.079 3.921 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.027 0.973 28 H 0.024 0.976 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.006 0.994 33 H 0.256 0.744 34 H 0.025 0.975 35 H 0.065 0.935 36 H 0.029 0.971 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.389 0.611 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.109 0.891 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.515 2.172 13.347 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.058 4.058 3 C -0.183 4.183 4 C 0.009 3.991 5 C -0.546 4.546 6 H 0.071 0.929 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.710 3.290 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.201 1.201 13 C -0.059 4.059 14 N -0.237 5.237 15 C -0.074 4.074 16 C -0.109 4.109 17 C -0.087 4.087 18 C 0.055 3.945 19 O -0.310 6.310 20 C -0.170 4.170 21 C -0.129 4.129 22 C -0.144 4.144 23 C -0.055 4.055 24 C -0.048 4.048 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.025 0.975 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.245 0.755 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.126 0.874 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.664 2.000 13.332 15.508 hybrid contribution -0.369 0.519 -0.708 0.952 sum 7.296 2.519 12.624 14.797 Atomic orbital electron populations 1.21737 0.95879 1.01149 0.99616 1.20616 0.93912 0.95100 0.96183 1.21921 1.01437 0.96523 0.98433 1.19017 0.97461 0.93967 0.88628 1.21358 1.30380 1.11707 0.91142 0.92860 1.24972 0.95582 0.95131 0.98757 1.69978 1.37479 1.23216 1.22888 0.86771 0.79153 0.79488 0.83597 1.20964 1.21512 1.20107 1.22353 0.85955 1.00290 0.97336 1.62166 1.06514 1.01236 1.53816 1.22176 0.95903 0.94204 0.95148 1.20427 0.93366 0.94146 1.03008 1.19910 0.92810 0.95483 1.00450 1.18385 0.90026 0.84480 1.01616 1.84755 1.81485 1.31949 1.32791 1.21272 0.99876 0.92164 1.03687 1.20853 0.94661 0.96870 1.00506 1.21055 0.93625 0.98162 1.01586 1.19609 0.95660 0.92107 0.98108 1.21449 0.89262 0.95758 0.98334 0.91896 0.93567 0.95428 0.95677 0.92220 0.92758 0.94646 0.97523 0.93423 0.95656 0.91617 0.95286 0.90165 0.89461 0.90451 0.75522 0.85853 0.85885 0.85918 0.87367 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.09 37.16 0.30 -2.04 16 2 C -0.06 -1.13 0.61 -154.51 -0.09 -1.22 16 3 C -0.13 -2.33 6.48 37.16 0.24 -2.09 16 4 C 0.05 1.16 3.77 -27.88 -0.11 1.06 16 5 C -0.51 -13.91 7.84 -34.44 -0.27 -14.18 16 6 H 0.05 1.43 5.79 -52.49 -0.30 1.12 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 9 Si 0.88 21.78 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.07 1.15 4.22 -3.82 -0.02 1.14 16 14 N -0.51 -8.67 3.52 -236.20 -0.83 -9.50 16 15 C 0.05 0.80 5.54 -3.74 -0.02 0.78 16 16 C -0.07 -1.05 5.54 -27.93 -0.15 -1.20 16 17 C -0.09 -1.29 5.78 -104.46 -0.60 -1.89 16 18 C 0.10 1.37 6.67 -39.13 -0.26 1.11 16 19 O -0.50 -6.11 12.63 -19.45 -0.25 -6.36 16 20 C -0.15 -1.89 9.99 -39.50 -0.39 -2.28 16 21 C -0.11 -1.32 10.04 -39.68 -0.40 -1.72 16 22 C -0.13 -1.65 9.64 -39.45 -0.38 -2.03 16 23 C -0.05 -0.82 5.79 -104.64 -0.61 -1.42 16 24 C 0.08 1.21 4.73 -5.17 -0.02 1.18 16 25 H 0.06 1.25 6.73 -51.93 -0.35 0.90 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.39 7.83 -51.93 -0.41 -0.02 16 29 H 0.06 1.16 6.07 -51.93 -0.31 0.84 16 30 H 0.05 1.05 7.02 -51.93 -0.36 0.69 16 31 H 0.04 0.97 7.45 -51.93 -0.39 0.59 16 32 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.03 0.39 7.62 -51.93 -0.40 -0.01 16 35 H 0.07 1.10 7.51 -51.92 -0.39 0.71 16 36 H 0.03 0.40 8.05 -51.93 -0.42 -0.02 16 37 H 0.08 1.16 7.68 -51.93 -0.40 0.76 16 38 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.08 1.01 7.85 -51.93 -0.41 0.61 16 40 H 0.39 3.24 9.06 45.56 0.41 3.66 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.11 1.71 4.36 -51.93 -0.23 1.48 16 45 H 0.04 0.55 7.94 -51.93 -0.41 0.14 16 LS Contribution 346.51 15.07 5.22 5.22 Total: -1.00 -31.40 346.51 -9.48 -40.88 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.46 Total: 2.56 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -2.88 Total: -23.32 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.10 Total: -35.74 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.25 Total: -6.36 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.40 -9.48 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600209000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.492 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds