Wall clock time and date at job start Tue Mar 31 2020 06:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 C 1.52994 * 109.47546 * 239.99409 * 2 1 3 5 5 C 1.50711 * 109.47063 * 60.00051 * 4 2 1 6 6 H 1.07999 * 119.99219 * 0.02562 * 5 4 2 7 7 C 1.37868 * 120.00034 * 179.97438 * 5 4 2 8 8 N 1.31521 * 120.00329 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00060 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46957 * 89.99830 * 9 7 5 11 11 H 1.48494 * 109.47577 * 209.99904 * 9 7 5 12 12 H 1.48501 * 109.47041 * 330.00482 * 9 7 5 13 13 C 1.52998 * 109.46769 * 119.99453 * 2 1 3 14 14 N 1.46906 * 109.47216 * 174.21560 * 13 2 1 15 15 C 1.47155 * 111.00171 * 208.98378 * 14 13 2 16 16 C 1.52890 * 108.50134 * 165.36031 * 15 14 13 17 17 C 1.50709 * 109.95264 * 50.40964 * 16 15 14 18 18 C 1.39161 * 118.48976 * 163.24276 * 17 16 15 19 19 O 1.35907 * 119.88163 * 359.57239 * 18 17 16 20 20 C 1.38531 * 120.23378 * 179.59832 * 18 17 16 21 21 C 1.38174 * 119.76133 * 359.97438 * 20 18 17 22 22 C 1.38042 * 119.93057 * 0.09483 * 21 20 18 23 23 C 1.37744 * 121.68614 * 342.99848 * 17 16 15 24 24 C 1.46622 * 110.99811 * 85.96965 * 14 13 2 25 25 H 1.09001 * 109.46862 * 54.74405 * 1 2 3 26 26 H 1.08996 * 109.47044 * 174.73810 * 1 2 3 27 27 H 1.08992 * 109.47509 * 294.74166 * 1 2 3 28 28 H 1.08999 * 109.47313 * 74.34336 * 3 2 1 29 29 H 1.08999 * 109.47136 * 194.34361 * 3 2 1 30 30 H 1.09002 * 109.46736 * 314.34173 * 3 2 1 31 31 H 1.08993 * 109.47395 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.47285 * 300.00844 * 4 2 1 33 33 H 0.96994 * 120.00071 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.47687 * 294.21689 * 13 2 1 35 35 H 1.09008 * 109.47242 * 54.21924 * 13 2 1 36 36 H 1.09003 * 109.63145 * 285.04995 * 15 14 13 37 37 H 1.09003 * 109.63445 * 45.64834 * 15 14 13 38 38 H 1.08995 * 109.39041 * 290.25996 * 16 15 14 39 39 H 1.08999 * 109.30767 * 170.50444 * 16 15 14 40 40 H 0.96702 * 113.99551 * 90.00322 * 19 18 17 41 41 H 1.08000 * 120.12092 * 180.02562 * 20 18 17 42 42 H 1.07995 * 120.03521 * 180.11358 * 21 20 18 43 43 H 1.08000 * 119.74644 * 179.97438 * 22 21 20 44 44 H 1.09007 * 109.26891 * 296.18220 * 24 14 13 45 45 H 1.09007 * 109.27099 * 55.64872 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4797 6 1 0.9172 0.8673 -2.3806 7 6 1.8714 -0.4818 -3.7319 8 7 2.6275 -1.5511 -3.8525 9 14 1.2494 0.3990 -5.2572 10 1 2.2277 1.4408 -5.6607 11 1 1.0848 -0.5798 -6.3617 12 1 -0.0589 1.0366 -4.9617 13 6 2.0399 -0.7211 1.2493 14 7 3.5023 -0.8433 1.1817 15 6 3.9659 -2.0373 1.9060 16 6 5.4142 -2.3170 1.5038 17 6 6.2370 -1.0616 1.6389 18 6 7.6236 -1.1765 1.6660 19 8 8.2033 -2.4027 1.5802 20 6 8.4152 -0.0454 1.7806 21 6 7.8232 1.2001 1.8677 22 6 6.4475 1.3121 1.8422 23 6 5.6507 0.1815 1.7299 24 6 4.1549 0.3578 1.7120 25 1 -0.3633 0.5932 -0.8392 26 1 -0.3633 -1.0233 -0.0942 27 1 -0.3634 0.4301 0.9332 28 1 1.8996 1.8775 0.9895 29 1 3.0998 1.4532 -0.2546 30 1 1.4839 2.0244 -0.7350 31 1 3.1300 -0.7217 -1.2488 32 1 1.6767 -1.7490 -1.2491 33 1 2.8625 -1.8821 -4.7334 34 1 1.7636 -0.1510 2.1362 35 1 1.5945 -1.7146 1.3027 36 1 3.9124 -1.8580 2.9799 37 1 3.3412 -2.8910 1.6428 38 1 5.4428 -2.6589 0.4692 39 1 5.8253 -3.0907 2.1522 40 1 8.3942 -2.6850 0.6752 41 1 9.4911 -0.1366 1.8011 42 1 8.4360 2.0850 1.9554 43 1 5.9879 2.2871 1.9109 44 1 3.9009 1.2121 1.0844 45 1 3.8021 0.5405 2.7271 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600209000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:08 Heat of formation + Delta-G solvation = -42.496308 kcal Electronic energy + Delta-G solvation = -23905.019933 eV Core-core repulsion = 20693.165767 eV Total energy + Delta-G solvation = -3211.854166 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.36989 -39.57448 -37.77935 -36.70805 -34.46523 -33.03229 -32.14260 -29.66278 -29.00716 -28.17166 -27.34748 -25.06154 -24.59824 -23.73862 -22.94914 -20.53637 -19.55012 -18.88882 -18.25856 -17.18774 -17.09868 -16.57953 -16.45778 -16.01866 -15.60474 -15.44202 -14.90672 -14.56876 -14.53375 -14.34938 -14.01392 -13.72221 -13.46684 -13.33722 -13.12327 -12.93264 -12.77681 -12.70763 -12.57508 -12.41900 -12.26939 -12.18876 -12.15705 -11.93400 -11.53999 -11.25649 -11.08977 -10.73202 -10.63851 -10.40038 -9.56373 -9.44087 -8.99391 -8.04869 -6.10775 0.32441 0.41393 1.41623 1.41701 1.51867 2.48099 2.67419 3.01537 3.28566 3.36382 3.76443 3.77972 4.08559 4.16816 4.19896 4.24369 4.35919 4.44332 4.46333 4.52198 4.55311 4.65848 4.75551 4.78643 4.85123 4.90633 4.95963 4.97272 4.99922 5.04971 5.21365 5.23483 5.25382 5.47754 5.50844 5.56704 5.62045 5.63146 5.70869 5.78167 5.94014 6.03944 6.15532 6.24925 6.35322 6.48681 6.83366 7.08374 7.55385 9.06669 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016153 B = 0.004755 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.995854 B = 5887.636998 C = 6391.623257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.057 4.057 3 C -0.118 4.118 4 C 0.061 3.939 5 C -0.513 4.513 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.264 1.264 13 C 0.075 3.925 14 N -0.541 5.541 15 C 0.057 3.943 16 C -0.066 4.066 17 C -0.112 4.112 18 C 0.089 3.911 19 O -0.506 6.506 20 C -0.155 4.155 21 C -0.107 4.107 22 C -0.134 4.134 23 C -0.075 4.075 24 C 0.083 3.917 25 H 0.045 0.955 26 H 0.037 0.963 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.003 0.997 32 H -0.030 1.030 33 H 0.256 0.744 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.404 0.596 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.142 0.858 44 H 0.101 0.899 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.636 4.059 14.576 16.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.058 4.058 3 C -0.175 4.175 4 C 0.024 3.976 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.774 3.226 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.188 1.188 13 C -0.053 4.053 14 N -0.265 5.265 15 C -0.071 4.071 16 C -0.103 4.103 17 C -0.113 4.113 18 C 0.045 3.955 19 O -0.318 6.318 20 C -0.174 4.174 21 C -0.125 4.125 22 C -0.152 4.152 23 C -0.076 4.076 24 C -0.044 4.044 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.021 0.979 32 H -0.012 1.012 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.262 0.738 41 H 0.162 0.838 42 H 0.172 0.828 43 H 0.159 0.841 44 H 0.119 0.881 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.779 3.896 14.563 16.964 hybrid contribution -0.339 -0.094 -1.080 1.136 sum 7.440 3.802 13.483 15.862 Atomic orbital electron populations 1.21662 0.94802 1.00640 1.00790 1.20535 0.94801 0.95600 0.94823 1.21817 1.00155 0.95434 1.00047 1.18773 0.95210 0.92473 0.91119 1.21768 1.29660 1.11623 0.92071 0.92219 1.25838 0.95961 0.95930 1.02224 1.70132 1.39127 1.24997 1.23503 0.85708 0.79050 0.78284 0.79563 1.20384 1.21486 1.18795 1.22207 0.86260 1.00124 0.96701 1.62064 1.06535 1.02562 1.55297 1.22160 0.95838 0.93403 0.95709 1.20329 0.93545 0.94709 1.01727 1.20064 0.93641 0.95594 1.02018 1.18559 0.89875 0.85373 1.01694 1.84704 1.81250 1.31633 1.34259 1.21585 1.00952 0.91930 1.02899 1.21245 0.94550 0.97816 0.98841 1.21336 0.94238 0.98387 1.01240 1.19773 0.95769 0.92814 0.99231 1.21405 0.89602 0.94649 0.98753 0.93597 0.94421 0.91804 0.92121 0.93637 0.94094 0.97906 1.01179 0.93558 0.92944 0.91993 0.93829 0.90563 0.91849 0.89389 0.73791 0.83753 0.82791 0.84060 0.88103 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.35 8.09 71.98 0.58 -3.76 16 2 C -0.06 -2.22 0.61 -52.18 -0.03 -2.25 16 3 C -0.12 -4.19 6.48 71.98 0.47 -3.73 16 4 C 0.06 3.19 3.77 29.85 0.11 3.30 16 5 C -0.51 -28.63 7.84 25.60 0.20 -28.43 16 6 H 0.06 3.20 5.79 -2.91 -0.02 3.18 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 9 Si 0.95 45.13 29.54 68.60 2.03 47.15 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.07 2.45 4.22 86.30 0.36 2.82 16 14 N -0.54 -18.24 3.52 -901.19 -3.17 -21.41 16 15 C 0.06 1.69 5.54 86.22 0.48 2.16 16 16 C -0.07 -1.96 5.54 29.81 0.17 -1.79 16 17 C -0.11 -3.38 5.78 -19.76 -0.11 -3.49 16 18 C 0.09 2.41 6.67 22.56 0.15 2.56 16 19 O -0.51 -12.11 12.63 -92.51 -1.17 -13.28 16 20 C -0.16 -3.57 9.99 22.32 0.22 -3.35 16 21 C -0.11 -2.28 10.04 22.21 0.22 -2.06 16 22 C -0.13 -3.26 9.64 22.35 0.22 -3.05 16 23 C -0.08 -2.21 5.79 -19.88 -0.12 -2.32 16 24 C 0.08 2.44 4.73 85.59 0.40 2.85 16 25 H 0.04 1.78 6.73 -2.39 -0.02 1.76 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 1.72 7.83 -2.39 -0.02 1.70 16 29 H 0.04 1.75 6.07 -2.39 -0.01 1.73 16 30 H 0.04 1.54 7.02 -2.39 -0.02 1.52 16 31 H 0.00 0.15 7.45 -2.39 -0.02 0.13 16 32 H -0.03 -1.77 8.14 -2.39 -0.02 -1.79 16 33 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.05 1.45 7.62 -2.39 -0.02 1.43 16 35 H 0.06 2.06 7.51 -2.38 -0.02 2.04 16 36 H 0.04 1.16 8.05 -2.39 -0.02 1.14 16 37 H 0.08 2.26 7.68 -2.39 -0.02 2.24 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.09 2.34 7.85 -2.39 -0.02 2.32 16 40 H 0.40 6.65 9.06 -74.06 -0.67 5.98 16 41 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 43 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 44 H 0.10 3.07 4.36 -2.38 -0.01 3.06 16 45 H 0.05 1.41 7.94 -2.38 -0.02 1.39 16 Total: -1.00 -69.04 346.51 2.07 -66.97 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.31 Total: 18.73 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 3.79 Total: -40.26 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -2.89 Total: -79.31 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -1.17 Total: -13.28 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -69.04 2.07 -66.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600209000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.473 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds