Wall clock time and date at job start Tue Mar 31 2020 06:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47296 * 2 1 4 4 C 1.53001 * 109.47075 * 239.99817 * 2 1 3 5 5 C 1.52994 * 109.46989 * 120.00163 * 2 1 3 6 6 C 1.53004 * 109.47398 * 59.99847 * 5 2 1 7 7 C 1.53001 * 109.47132 * 180.02562 * 6 5 2 8 8 N 1.46500 * 109.46923 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99983 * 179.97438 * 8 7 6 10 10 O 1.21607 * 119.99826 * 0.02562 * 9 8 7 11 11 C 1.47437 * 120.00283 * 180.02562 * 9 8 7 12 12 C 1.39227 * 120.27694 * 355.71167 * 11 9 8 13 13 C 1.38223 * 120.09019 * 180.27968 * 12 11 9 14 14 C 1.38827 * 120.67436 * 359.69359 * 13 12 11 15 15 C 1.37596 * 120.57166 * 0.02562 * 14 13 12 16 16 C 1.40714 * 119.88143 * 0.02562 * 15 14 13 17 17 C 1.40885 * 120.33020 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00278 * 216.32858 * 17 16 15 19 19 C 1.40279 * 119.99934 * 36.32229 * 17 16 15 20 20 N 1.30628 * 120.00021 * 190.51200 * 19 17 16 21 21 Si 1.86805 * 119.99864 * 10.51087 * 19 17 16 22 22 H 1.48495 * 109.47237 * 267.22291 * 21 19 17 23 23 H 1.48498 * 109.47138 * 27.22377 * 21 19 17 24 24 H 1.48504 * 109.46514 * 147.22203 * 21 19 17 25 25 H 1.08996 * 109.46816 * 300.00392 * 1 2 3 26 26 H 1.09007 * 109.46743 * 59.99980 * 1 2 3 27 27 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47105 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.47241 * 299.99715 * 3 2 1 30 30 H 1.09003 * 109.47296 * 59.99769 * 3 2 1 31 31 H 1.09000 * 109.47061 * 300.00208 * 4 2 1 32 32 H 1.09007 * 109.46744 * 60.00137 * 4 2 1 33 33 H 1.08996 * 109.47494 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47209 * 300.00030 * 5 2 1 35 35 H 1.09001 * 109.47192 * 179.97438 * 5 2 1 36 36 H 1.09001 * 109.46791 * 59.99927 * 6 5 2 37 37 H 1.09001 * 109.46985 * 300.00171 * 6 5 2 38 38 H 1.09001 * 109.47351 * 60.00259 * 7 6 5 39 39 H 1.09001 * 109.47316 * 299.99957 * 7 6 5 40 40 H 0.97001 * 120.00283 * 0.02562 * 8 7 6 41 41 H 1.08002 * 119.96175 * 359.97438 * 12 11 9 42 42 H 1.08002 * 119.66391 * 179.71666 * 13 12 11 43 43 H 1.08000 * 119.71712 * 180.02562 * 14 13 12 44 44 H 1.07999 * 120.06224 * 180.02562 * 15 14 13 45 45 H 0.96995 * 120.00424 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -2.1638 1.2492 7 6 2.0394 -2.8848 2.4988 8 7 1.5505 -4.2659 2.4991 9 6 1.8760 -5.0957 3.5099 10 8 2.5751 -4.6980 4.4220 11 6 1.3845 -6.4858 3.5100 12 6 0.5120 -6.9218 2.5166 13 6 0.0490 -8.2242 2.5237 14 6 0.4499 -9.1130 3.5119 15 6 1.3159 -8.7129 4.5036 16 6 1.8010 -7.3922 4.5198 17 6 2.6876 -6.9723 5.5310 18 1 2.6208 -5.9692 5.9255 19 6 3.6572 -7.8573 6.0256 20 7 4.3401 -7.5468 7.0950 21 14 3.9717 -9.4798 5.1548 22 1 3.1334 -10.5411 5.7678 23 1 3.6264 -9.3449 3.7169 24 1 5.4055 -9.8429 5.2877 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2491 34 1 1.6766 -0.2075 2.1392 35 1 3.1300 -0.7217 1.2490 36 1 1.8933 -2.6776 0.3592 37 1 0.4399 -2.1638 1.2492 38 1 1.6757 -2.3709 3.3886 39 1 3.1294 -2.8849 2.4993 40 1 0.9932 -4.5833 1.7714 41 1 0.1924 -6.2402 1.7421 42 1 -0.6313 -8.5539 1.7523 43 1 0.0789 -10.1272 3.5023 44 1 1.6227 -9.4113 5.2681 45 1 5.0107 -8.1585 7.4368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601213386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:41 Heat of formation + Delta-G solvation = -45.925658 kcal Electronic energy + Delta-G solvation = -22649.890146 eV Core-core repulsion = 19437.887273 eV Total energy + Delta-G solvation = -3212.002874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.11915 -38.29783 -36.96508 -34.56265 -33.58643 -31.47687 -30.44155 -29.73906 -27.50593 -27.47687 -26.04805 -25.00291 -22.42415 -21.74789 -20.82544 -19.49735 -18.66729 -17.57043 -16.63505 -15.58860 -15.50776 -15.30373 -14.59158 -14.49279 -14.25218 -14.08194 -13.92633 -13.65152 -13.50415 -12.73003 -12.66779 -12.48425 -12.39589 -12.01640 -11.89043 -11.87420 -11.77608 -11.60043 -11.46077 -11.01612 -10.92647 -10.72269 -10.64885 -10.56209 -10.49521 -10.42026 -10.12883 -9.79443 -9.24252 -8.44391 -8.34931 -7.80222 -7.57465 -6.88546 -4.46796 2.12555 2.61427 3.09420 3.18304 3.29775 3.91616 3.97448 4.04863 4.56367 4.61702 4.63155 4.64784 5.05471 5.13173 5.30885 5.40394 5.42886 5.43743 5.48061 5.58571 5.66033 5.69994 5.72389 5.79255 5.79811 5.85621 5.90964 5.98071 6.05662 6.09680 6.10968 6.19879 6.30309 6.33668 6.45716 6.52836 6.81101 7.10629 7.16042 7.25476 7.40916 7.60279 7.77534 8.03164 8.36535 8.49855 8.65957 8.88721 9.40546 10.08195 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022970 B = 0.003416 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.706503 B = 8194.413842 C = 8953.329618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.106 4.106 6 C -0.133 4.133 7 C 0.125 3.875 8 N -0.749 5.749 9 C 0.559 3.441 10 O -0.529 6.529 11 C -0.249 4.249 12 C -0.041 4.041 13 C -0.255 4.255 14 C -0.066 4.066 15 C -0.226 4.226 16 C 0.116 3.884 17 C -0.402 4.402 18 H 0.124 0.876 19 C 0.079 3.921 20 N -0.794 5.794 21 Si 0.907 3.093 22 H -0.268 1.268 23 H -0.242 1.242 24 H -0.289 1.289 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.390 0.610 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.083 10.100 -13.658 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 C -0.199 4.199 4 C -0.202 4.202 5 C -0.144 4.144 6 C -0.171 4.171 7 C 0.000 4.000 8 N -0.404 5.404 9 C 0.352 3.648 10 O -0.407 6.407 11 C -0.254 4.254 12 C -0.060 4.060 13 C -0.275 4.275 14 C -0.084 4.084 15 C -0.245 4.245 16 C 0.112 3.888 17 C -0.429 4.429 18 H 0.141 0.859 19 C -0.142 4.142 20 N -0.417 5.417 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.166 1.166 24 H -0.216 1.216 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.224 0.776 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.122 0.878 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.345 10.407 -12.743 17.017 hybrid contribution -0.066 -0.933 -0.650 1.139 sum -4.411 9.474 -13.393 16.988 Atomic orbital electron populations 1.21942 0.94686 1.02053 1.01461 1.20546 0.95678 0.95307 0.95494 1.21872 1.00980 0.95471 1.01545 1.21943 1.01016 1.00520 0.96683 1.21559 1.00856 0.94697 0.97283 1.21925 1.01348 0.95746 0.98085 1.21149 0.99005 0.82435 0.97374 1.45996 1.56032 1.11749 1.26630 1.18358 0.79826 0.85569 0.81019 1.90724 1.37743 1.76785 1.35405 1.19435 1.10788 0.94428 1.00718 1.20773 0.94719 0.95081 0.95460 1.20283 1.09367 0.94752 1.03065 1.20736 0.96181 0.97465 0.94067 1.21152 1.04141 0.97632 1.01580 1.17558 0.91235 0.90098 0.89939 1.20201 1.09539 1.01921 1.11191 0.85852 1.26386 0.95190 0.99357 0.93236 1.69568 1.17831 1.36916 1.17379 0.86391 0.76670 0.80790 0.82863 1.19425 1.16561 1.21609 0.92694 0.93016 0.92181 0.92688 0.92874 0.92693 0.92180 0.93013 0.92684 0.91653 0.91646 0.91249 0.91266 0.92333 0.92292 0.77565 0.88723 0.88563 0.88593 0.87795 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.12 37.16 0.30 -0.85 16 2 C -0.07 -0.58 0.80 -154.51 -0.12 -0.70 16 3 C -0.14 -1.07 8.47 37.16 0.31 -0.76 16 4 C -0.14 -1.16 8.12 37.16 0.30 -0.86 16 5 C -0.11 -1.01 4.27 -26.73 -0.11 -1.13 16 6 C -0.13 -1.43 4.62 -26.73 -0.12 -1.55 16 7 C 0.12 1.87 5.67 -4.04 -0.02 1.85 16 8 N -0.75 -13.09 5.51 -61.38 -0.34 -13.43 16 9 C 0.56 12.94 7.72 -12.51 -0.10 12.85 16 10 O -0.53 -14.35 13.54 5.27 0.07 -14.28 16 11 C -0.25 -5.91 5.92 -104.37 -0.62 -6.53 16 12 C -0.04 -0.83 9.52 -39.22 -0.37 -1.20 16 13 C -0.26 -5.05 10.03 -39.37 -0.39 -5.44 16 14 C -0.07 -1.38 10.01 -39.60 -0.40 -1.78 16 15 C -0.23 -5.40 7.00 -38.88 -0.27 -5.67 16 16 C 0.12 3.04 5.03 -106.54 -0.54 2.50 16 17 C -0.40 -11.43 8.31 -37.81 -0.31 -11.75 16 18 H 0.12 3.89 5.96 -52.49 -0.31 3.58 16 19 C 0.08 2.13 5.47 -17.30 -0.09 2.03 16 20 N -0.79 -21.82 13.92 55.56 0.77 -21.04 16 21 Si 0.91 20.95 24.52 -169.99 -4.17 16.79 16 22 H -0.27 -5.89 6.76 56.52 0.38 -5.51 16 23 H -0.24 -5.74 6.73 56.52 0.38 -5.36 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 27 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 37 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.39 5.73 6.52 -40.82 -0.27 5.46 16 41 H 0.09 1.53 6.42 -52.49 -0.34 1.20 16 42 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.10 2.45 5.01 -52.49 -0.26 2.18 16 45 H 0.29 7.06 8.29 -40.82 -0.34 6.72 16 LS Contribution 350.78 15.07 5.29 5.29 Total: -1.00 -30.41 350.78 -8.12 -38.54 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.19 Total: 7.13 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -2.56 Total: -18.99 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.44 Total: -34.47 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.07 Total: -14.28 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.17 Total: 16.79 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.41 -8.12 -38.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601213386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.389 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds