Wall clock time and date at job start Tue Mar 31 2020 06:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47296 * 2 1 4 4 C 1.53001 * 109.47075 * 239.99817 * 2 1 3 5 5 C 1.52994 * 109.46989 * 120.00163 * 2 1 3 6 6 C 1.53004 * 109.47398 * 59.99847 * 5 2 1 7 7 C 1.53001 * 109.47132 * 180.02562 * 6 5 2 8 8 N 1.46500 * 109.46923 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99983 * 179.97438 * 8 7 6 10 10 O 1.21607 * 119.99826 * 0.02562 * 9 8 7 11 11 C 1.47437 * 120.00283 * 180.02562 * 9 8 7 12 12 C 1.39227 * 120.27694 * 355.71167 * 11 9 8 13 13 C 1.38223 * 120.09019 * 180.27968 * 12 11 9 14 14 C 1.38827 * 120.67436 * 359.69359 * 13 12 11 15 15 C 1.37596 * 120.57166 * 0.02562 * 14 13 12 16 16 C 1.40714 * 119.88143 * 0.02562 * 15 14 13 17 17 C 1.40885 * 120.33020 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00278 * 216.32858 * 17 16 15 19 19 C 1.40279 * 119.99934 * 36.32229 * 17 16 15 20 20 N 1.30628 * 120.00021 * 190.51200 * 19 17 16 21 21 Si 1.86805 * 119.99864 * 10.51087 * 19 17 16 22 22 H 1.48495 * 109.47237 * 267.22291 * 21 19 17 23 23 H 1.48498 * 109.47138 * 27.22377 * 21 19 17 24 24 H 1.48504 * 109.46514 * 147.22203 * 21 19 17 25 25 H 1.08996 * 109.46816 * 300.00392 * 1 2 3 26 26 H 1.09007 * 109.46743 * 59.99980 * 1 2 3 27 27 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47105 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.47241 * 299.99715 * 3 2 1 30 30 H 1.09003 * 109.47296 * 59.99769 * 3 2 1 31 31 H 1.09000 * 109.47061 * 300.00208 * 4 2 1 32 32 H 1.09007 * 109.46744 * 60.00137 * 4 2 1 33 33 H 1.08996 * 109.47494 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47209 * 300.00030 * 5 2 1 35 35 H 1.09001 * 109.47192 * 179.97438 * 5 2 1 36 36 H 1.09001 * 109.46791 * 59.99927 * 6 5 2 37 37 H 1.09001 * 109.46985 * 300.00171 * 6 5 2 38 38 H 1.09001 * 109.47351 * 60.00259 * 7 6 5 39 39 H 1.09001 * 109.47316 * 299.99957 * 7 6 5 40 40 H 0.97001 * 120.00283 * 0.02562 * 8 7 6 41 41 H 1.08002 * 119.96175 * 359.97438 * 12 11 9 42 42 H 1.08002 * 119.66391 * 179.71666 * 13 12 11 43 43 H 1.08000 * 119.71712 * 180.02562 * 14 13 12 44 44 H 1.07999 * 120.06224 * 180.02562 * 15 14 13 45 45 H 0.96995 * 120.00424 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -2.1638 1.2492 7 6 2.0394 -2.8848 2.4988 8 7 1.5505 -4.2659 2.4991 9 6 1.8760 -5.0957 3.5099 10 8 2.5751 -4.6980 4.4220 11 6 1.3845 -6.4858 3.5100 12 6 0.5120 -6.9218 2.5166 13 6 0.0490 -8.2242 2.5237 14 6 0.4499 -9.1130 3.5119 15 6 1.3159 -8.7129 4.5036 16 6 1.8010 -7.3922 4.5198 17 6 2.6876 -6.9723 5.5310 18 1 2.6208 -5.9692 5.9255 19 6 3.6572 -7.8573 6.0256 20 7 4.3401 -7.5468 7.0950 21 14 3.9717 -9.4798 5.1548 22 1 3.1334 -10.5411 5.7678 23 1 3.6264 -9.3449 3.7169 24 1 5.4055 -9.8429 5.2877 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2491 34 1 1.6766 -0.2075 2.1392 35 1 3.1300 -0.7217 1.2490 36 1 1.8933 -2.6776 0.3592 37 1 0.4399 -2.1638 1.2492 38 1 1.6757 -2.3709 3.3886 39 1 3.1294 -2.8849 2.4993 40 1 0.9932 -4.5833 1.7714 41 1 0.1924 -6.2402 1.7421 42 1 -0.6313 -8.5539 1.7523 43 1 0.0789 -10.1272 3.5023 44 1 1.6227 -9.4113 5.2681 45 1 5.0107 -8.1585 7.4368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601213386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:40 Heat of formation + Delta-G solvation = -64.636667 kcal Electronic energy + Delta-G solvation = -22650.701517 eV Core-core repulsion = 19437.887273 eV Total energy + Delta-G solvation = -3212.814244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.82691 -39.21981 -38.61763 -36.10429 -35.41965 -32.84999 -32.28096 -31.24949 -28.12464 -28.08587 -27.54115 -26.52969 -24.03023 -23.08839 -22.43997 -21.14110 -19.47615 -19.40158 -18.30554 -17.17061 -16.84689 -16.68192 -15.92874 -15.80889 -15.52893 -15.43551 -15.17337 -14.88359 -14.85977 -14.47206 -14.08040 -13.87873 -13.51731 -13.41672 -13.20978 -12.71542 -12.62455 -12.60021 -12.59088 -12.49703 -12.48348 -12.18644 -12.03723 -11.79715 -11.61458 -11.36562 -11.31043 -11.29239 -11.08368 -10.31282 -9.98302 -9.50977 -9.40871 -8.82386 -6.48756 0.34748 0.84114 1.23139 1.36907 1.46082 2.09839 2.26551 2.46215 2.71559 3.53980 3.75904 3.93052 3.94509 4.16652 4.17072 4.26152 4.32796 4.45384 4.51079 4.66791 4.67549 4.72083 4.74770 4.83359 4.88977 4.89181 4.97808 4.98132 5.03235 5.11671 5.14571 5.22699 5.26128 5.30036 5.30240 5.44366 5.47351 5.58644 5.59695 5.65329 5.70023 5.87780 5.97075 6.27963 6.47756 6.68515 6.79183 6.93731 7.65593 8.22123 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022970 B = 0.003416 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.706503 B = 8194.413842 C = 8953.329618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.106 4.106 6 C -0.117 4.117 7 C 0.123 3.877 8 N -0.726 5.726 9 C 0.550 3.450 10 O -0.581 6.581 11 C -0.267 4.267 12 C -0.039 4.039 13 C -0.230 4.230 14 C -0.062 4.062 15 C -0.247 4.247 16 C 0.099 3.901 17 C -0.452 4.452 18 H 0.070 0.930 19 C 0.035 3.965 20 N -0.851 5.851 21 Si 0.969 3.031 22 H -0.247 1.247 23 H -0.249 1.249 24 H -0.280 1.280 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.409 0.591 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.137 0.863 44 H 0.102 0.898 45 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.735 8.832 -17.917 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 C -0.199 4.199 4 C -0.202 4.202 5 C -0.144 4.144 6 C -0.155 4.155 7 C -0.001 4.001 8 N -0.380 5.380 9 C 0.343 3.657 10 O -0.463 6.463 11 C -0.272 4.272 12 C -0.057 4.057 13 C -0.249 4.249 14 C -0.080 4.080 15 C -0.266 4.266 16 C 0.095 3.905 17 C -0.481 4.481 18 H 0.088 0.912 19 C -0.179 4.179 20 N -0.477 5.477 21 Si 0.791 3.209 22 H -0.172 1.172 23 H -0.173 1.173 24 H -0.207 1.207 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.246 0.754 41 H 0.159 0.841 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.119 0.881 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.040 9.154 -17.052 20.594 hybrid contribution 0.500 -0.424 0.426 0.782 sum -6.540 8.729 -16.626 19.884 Atomic orbital electron populations 1.21944 0.94166 1.02205 1.01823 1.20522 0.96047 0.95460 0.94721 1.21870 1.00903 0.95144 1.01957 1.21947 1.00847 1.00587 0.96793 1.21559 1.00591 0.94089 0.98137 1.21839 1.02029 0.95806 0.95815 1.21300 0.98154 0.81314 0.99321 1.45764 1.54912 1.11983 1.25349 1.18604 0.79386 0.86306 0.81441 1.90727 1.40068 1.77781 1.37695 1.19831 1.11471 0.94445 1.01408 1.21241 0.92982 0.96488 0.95031 1.20962 1.07507 0.93786 1.02605 1.21263 0.94215 0.99762 0.92781 1.21254 1.05567 0.96668 1.03138 1.17829 0.90833 0.92025 0.89820 1.19952 1.13095 1.00338 1.14693 0.91172 1.27138 0.94457 1.02576 0.93739 1.69627 1.19821 1.38823 1.19452 0.85469 0.77224 0.77201 0.81045 1.17171 1.17255 1.20679 0.92952 0.92118 0.92088 0.92875 0.91950 0.92819 0.92113 0.92103 0.93023 0.92081 0.92192 0.89985 0.89851 0.93772 0.93969 0.75415 0.84068 0.83638 0.84518 0.88070 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.12 71.98 0.58 -1.34 16 2 C -0.07 -0.97 0.80 -52.18 -0.04 -1.02 16 3 C -0.14 -1.92 8.47 71.98 0.61 -1.31 16 4 C -0.14 -1.96 8.12 71.98 0.58 -1.38 16 5 C -0.11 -1.89 4.27 30.59 0.13 -1.76 16 6 C -0.12 -2.28 4.62 30.60 0.14 -2.14 16 7 C 0.12 3.69 5.67 86.38 0.49 4.18 16 8 N -0.73 -24.61 5.51 -466.35 -2.57 -27.18 16 9 C 0.55 26.06 7.72 86.67 0.67 26.73 16 10 O -0.58 -33.93 13.54 -4.05 -0.05 -33.99 16 11 C -0.27 -12.51 5.92 -19.70 -0.12 -12.63 16 12 C -0.04 -1.38 9.52 22.50 0.21 -1.17 16 13 C -0.23 -7.61 10.03 22.41 0.22 -7.38 16 14 C -0.06 -2.30 10.01 22.26 0.22 -2.07 16 15 C -0.25 -11.46 7.00 22.72 0.16 -11.30 16 16 C 0.10 5.27 5.03 -21.11 -0.11 5.16 16 17 C -0.45 -27.71 8.31 23.41 0.19 -27.52 16 18 H 0.07 4.93 5.96 -2.91 -0.02 4.91 16 19 C 0.03 1.99 5.47 85.37 0.47 2.46 16 20 N -0.85 -50.50 13.92 21.88 0.30 -50.19 16 21 Si 0.97 44.34 24.52 68.60 1.68 46.02 16 22 H -0.25 -10.29 6.76 99.48 0.67 -9.62 16 23 H -0.25 -11.43 6.73 99.48 0.67 -10.76 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.06 0.80 6.43 -2.39 -0.02 0.78 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.81 6.43 -2.39 -0.02 0.79 16 32 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.44 6.43 -2.39 -0.02 1.42 16 37 H 0.08 1.43 6.43 -2.39 -0.02 1.42 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.41 10.59 6.52 -92.71 -0.60 9.99 16 41 H 0.14 3.66 6.42 -2.91 -0.02 3.65 16 42 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 43 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 44 H 0.10 4.67 5.01 -2.91 -0.01 4.66 16 45 H 0.29 15.50 8.29 -92.71 -0.77 14.73 16 Total: -1.00 -73.86 350.78 4.10 -69.76 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.30 Total: 28.07 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: 4.43 Total: -32.49 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -2.26 Total: -77.37 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.05 Total: -33.99 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.68 Total: 46.02 kcal Total: -73.86 4.10 -69.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601213386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.123 kcal (2) G-P(sol) polarization free energy of solvation -73.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds