Wall clock time and date at job start Tue Mar 31 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 113.25382 * 2 1 4 4 C 1.53512 * 114.16944 * 132.94618 * 2 1 3 5 5 N 1.47485 * 87.92813 * 139.67284 * 4 2 1 6 6 C 1.46906 * 110.99532 * 221.29654 * 5 4 2 7 7 C 1.50702 * 109.46638 * 170.00440 * 6 5 4 8 8 C 1.38294 * 119.97003 * 269.97244 * 7 6 5 9 9 C 1.38232 * 120.11124 * 180.02562 * 8 7 6 10 10 C 1.38173 * 120.05823 * 359.97438 * 9 8 7 11 11 C 1.38705 * 119.94203 * 359.76822 * 10 9 8 12 12 O 1.35904 * 120.05924 * 180.25551 * 11 10 9 13 13 C 1.42903 * 116.99671 * 0.25297 * 12 11 10 14 14 C 1.52991 * 109.47070 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47292 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00129 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00165 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00372 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00070 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46975 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47066 * 119.99519 * 19 17 15 22 22 H 1.48501 * 109.47148 * 239.99634 * 19 17 15 23 23 C 1.38122 * 119.97497 * 90.00301 * 7 6 5 24 24 C 1.47474 * 87.83663 * 332.99067 * 5 4 2 25 25 H 1.08996 * 109.47186 * 287.05300 * 1 2 3 26 26 H 1.09000 * 109.47244 * 47.05360 * 1 2 3 27 27 H 1.08999 * 109.47034 * 167.04965 * 1 2 3 28 28 H 1.09006 * 109.46818 * 192.95041 * 3 2 1 29 29 H 1.08995 * 109.46805 * 312.94675 * 3 2 1 30 30 H 1.08989 * 109.47090 * 72.95147 * 3 2 1 31 31 H 1.09000 * 113.47771 * 24.90656 * 4 2 1 32 32 H 1.08997 * 113.47787 * 254.43902 * 4 2 1 33 33 H 1.08993 * 109.47513 * 50.00122 * 6 5 4 34 34 H 1.08998 * 109.46937 * 289.99833 * 6 5 4 35 35 H 1.08003 * 119.94130 * 0.05120 * 8 7 6 36 36 H 1.08008 * 119.97134 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.02588 * 180.02562 * 10 9 8 38 38 H 1.08996 * 109.46945 * 300.00498 * 13 12 11 39 39 H 1.09006 * 109.46787 * 59.99781 * 13 12 11 40 40 H 1.08996 * 109.47418 * 300.00504 * 14 13 12 41 41 H 1.09006 * 109.47277 * 60.00347 * 14 13 12 42 42 H 0.96993 * 120.00448 * 180.02562 * 18 17 15 43 43 H 1.08002 * 120.02504 * 359.97056 * 23 7 6 44 44 H 1.08998 * 113.47865 * 141.78144 * 24 5 4 45 45 H 1.09004 * 113.47668 * 272.24637 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1341 1.4058 0.0000 4 6 2.1585 -0.9542 1.0252 5 7 3.1618 -1.3058 0.0030 6 6 3.4330 -2.7496 0.0063 7 6 4.2661 -3.1070 -1.1976 8 6 3.6497 -3.4603 -2.3840 9 6 4.4110 -3.7891 -3.4900 10 6 5.7904 -3.7650 -3.4126 11 6 6.4110 -3.4058 -2.2253 12 8 7.7676 -3.3762 -2.1482 13 6 8.4922 -3.7217 -3.3303 14 6 9.9940 -3.6315 -3.0525 15 6 10.7583 -3.9952 -4.2993 16 1 10.2261 -4.2643 -5.1998 17 6 12.1370 -3.9856 -4.2903 18 7 12.7852 -3.6585 -3.1938 19 14 13.0844 -4.4371 -5.8357 20 1 12.1287 -4.7641 -6.9243 21 1 13.9328 -3.2905 -6.2490 22 1 13.9447 -5.6162 -5.5621 23 6 5.6446 -3.0819 -1.1149 24 6 2.1586 -0.9589 -1.0207 25 1 -0.3633 0.3014 0.9824 26 1 -0.3634 0.7002 -0.7522 27 1 -0.3633 -1.0015 -0.2303 28 1 3.1977 1.3441 -0.2303 29 1 1.6342 2.0159 -0.7522 30 1 2.0007 1.8585 0.9824 31 1 1.5090 -1.7853 1.3001 32 1 2.5810 -0.4443 1.8910 33 1 2.4908 -3.2964 -0.0285 34 1 3.9741 -3.0155 0.9144 35 1 2.5717 -3.4790 -2.4467 36 1 3.9272 -4.0644 -4.4156 37 1 6.3847 -4.0216 -4.2771 38 1 8.2378 -4.7388 -3.6282 39 1 8.2293 -3.0318 -4.1323 40 1 10.2480 -2.6142 -2.7549 41 1 10.2573 -4.3212 -2.2505 42 1 13.7550 -3.6513 -3.1875 43 1 6.1255 -2.8059 -0.1881 44 1 2.5811 -0.4530 -1.8889 45 1 1.5090 -1.7912 -1.2918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602750674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:54 Heat of formation + Delta-G solvation = 4.164605 kcal Electronic energy + Delta-G solvation = -22137.246504 eV Core-core repulsion = 18927.415708 eV Total energy + Delta-G solvation = -3209.830797 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90874 -39.60250 -37.23755 -33.82904 -33.33459 -31.13968 -30.66514 -29.14858 -27.73849 -27.02258 -26.17575 -24.99019 -23.08125 -22.16052 -21.48471 -20.10589 -18.69685 -17.58673 -16.25827 -15.97707 -15.83460 -15.65532 -15.35019 -15.25762 -15.20038 -14.50085 -14.00106 -13.78738 -13.52656 -13.04284 -12.99531 -12.74319 -12.58877 -12.36155 -12.31506 -12.10218 -11.75873 -11.46984 -11.44137 -11.28247 -11.14905 -10.91231 -10.76608 -10.64377 -10.43013 -10.39112 -9.84709 -9.64814 -9.27644 -9.11672 -8.64937 -8.44560 -7.82159 -6.09696 -4.14262 1.47097 1.69776 3.26913 3.33873 3.37558 3.72110 3.84010 3.97522 4.09487 4.41182 4.44381 4.69500 4.81481 4.88464 4.96512 5.09307 5.11401 5.24220 5.26723 5.30419 5.33271 5.35732 5.43193 5.47884 5.53723 5.62002 5.70993 5.74322 5.77363 5.84542 5.87665 6.03911 6.05073 6.08638 6.13310 6.23294 6.55933 6.58868 6.69976 6.74926 6.83667 7.01173 7.52321 7.65383 7.82695 8.08516 8.24882 8.91573 9.50023 11.01956 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031820 B = 0.002491 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.727181 B =11238.460793 C =11522.052327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 C -0.122 4.122 4 C 0.003 3.997 5 N -0.460 5.460 6 C 0.062 3.938 7 C -0.046 4.046 8 C -0.166 4.166 9 C -0.080 4.080 10 C -0.212 4.212 11 C 0.146 3.854 12 O -0.315 6.315 13 C 0.066 3.934 14 C 0.025 3.975 15 C -0.525 4.525 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.141 4.141 24 C 0.009 3.991 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.263 0.737 43 H 0.128 0.872 44 H 0.084 0.916 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.849 4.909 6.238 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.096 4.096 3 C -0.179 4.179 4 C -0.126 4.126 5 N -0.182 5.182 6 C -0.066 4.066 7 C -0.046 4.046 8 C -0.184 4.184 9 C -0.098 4.098 10 C -0.231 4.231 11 C 0.099 3.901 12 O -0.229 6.229 13 C -0.009 4.009 14 C -0.012 4.012 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.160 4.160 24 C -0.120 4.120 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.072 0.928 43 H 0.146 0.854 44 H 0.103 0.897 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.830 5.252 6.481 26.194 hybrid contribution -0.115 -0.932 -1.102 1.448 sum -24.946 4.320 5.379 25.882 Atomic orbital electron populations 1.21723 0.93782 1.01809 1.02033 1.22021 0.95029 0.95683 0.96902 1.21480 1.01581 0.93259 1.01560 1.23984 0.93613 0.98244 0.96760 1.69033 1.29444 1.15398 1.04292 1.21578 0.98332 0.89610 0.97031 1.19282 0.92787 0.98073 0.94486 1.20739 0.98994 1.05540 0.93168 1.20829 0.93136 0.97846 0.98019 1.21380 0.95750 1.07703 0.98233 1.19186 0.84087 0.93349 0.93516 1.86179 1.13838 1.82874 1.39969 1.23321 0.94941 0.98292 0.84297 1.19129 0.85200 0.98829 0.98089 1.21007 0.91302 1.47264 0.96792 0.92329 1.24996 0.97717 0.95070 0.96462 1.69982 1.08025 1.47761 1.26974 0.86434 0.79885 0.78162 0.82916 1.19651 1.20820 1.20841 1.20251 0.92260 1.05440 0.98064 1.23970 0.93363 0.97917 0.96786 0.92262 0.92212 0.92683 0.91262 0.92542 0.92454 0.91433 0.89684 0.93247 0.89594 0.86973 0.86266 0.85279 0.93174 0.93162 0.95367 0.95396 0.92755 0.85432 0.89731 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.29 37.16 0.35 -0.47 16 2 C -0.10 -0.74 1.52 -153.98 -0.23 -0.97 16 3 C -0.12 -0.95 9.22 37.16 0.34 -0.61 16 4 C 0.00 0.02 6.87 -7.54 -0.05 -0.03 16 5 N -0.46 -4.89 6.22 -246.05 -1.53 -6.42 16 6 C 0.06 0.67 4.97 -4.97 -0.02 0.64 16 7 C -0.05 -0.61 5.18 -104.64 -0.54 -1.15 16 8 C -0.17 -2.07 9.12 -39.56 -0.36 -2.43 16 9 C -0.08 -1.08 10.04 -39.61 -0.40 -1.47 16 10 C -0.21 -3.42 9.04 -39.43 -0.36 -3.77 16 11 C 0.15 2.64 6.69 -39.22 -0.26 2.38 16 12 O -0.32 -6.72 10.14 -19.44 -0.20 -6.92 16 13 C 0.07 1.44 4.68 37.15 0.17 1.61 16 14 C 0.02 0.66 5.34 -27.89 -0.15 0.51 16 15 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 19 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.14 -2.26 9.64 -39.43 -0.38 -2.64 16 24 C 0.01 0.08 5.94 -7.55 -0.04 0.03 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 27 H 0.05 0.31 7.90 -51.93 -0.41 -0.10 16 28 H 0.07 0.66 7.93 -51.93 -0.41 0.25 16 29 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 30 H 0.06 0.40 8.14 -51.94 -0.42 -0.02 16 31 H 0.07 0.48 7.73 -51.93 -0.40 0.08 16 32 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 33 H 0.05 0.45 7.50 -51.93 -0.39 0.06 16 34 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.11 1.13 7.70 -52.48 -0.40 0.73 16 36 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.13 2.05 6.30 -52.49 -0.33 1.72 16 38 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 39 H 0.05 1.05 7.67 -51.93 -0.40 0.66 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 44 H 0.08 0.88 8.12 -51.93 -0.42 0.45 16 45 H 0.07 0.56 7.13 -51.93 -0.37 0.19 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -30.53 365.45 -10.56 -41.08 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -7.70 Total: -1.81 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -2.35 Total: -21.88 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: -0.79 Total: -32.38 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.20 Total: -6.92 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.53 -10.56 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602750674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.249 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds