Wall clock time and date at job start Tue Mar 31 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 113.25382 * 2 1 4 4 C 1.53512 * 114.16944 * 132.94618 * 2 1 3 5 5 N 1.47485 * 87.92813 * 139.67284 * 4 2 1 6 6 C 1.46906 * 110.99532 * 221.29654 * 5 4 2 7 7 C 1.50702 * 109.46638 * 170.00440 * 6 5 4 8 8 C 1.38294 * 119.97003 * 269.97244 * 7 6 5 9 9 C 1.38232 * 120.11124 * 180.02562 * 8 7 6 10 10 C 1.38173 * 120.05823 * 359.97438 * 9 8 7 11 11 C 1.38705 * 119.94203 * 359.76822 * 10 9 8 12 12 O 1.35904 * 120.05924 * 180.25551 * 11 10 9 13 13 C 1.42903 * 116.99671 * 0.25297 * 12 11 10 14 14 C 1.52991 * 109.47070 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47292 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00129 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00165 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00372 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00070 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46975 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47066 * 119.99519 * 19 17 15 22 22 H 1.48501 * 109.47148 * 239.99634 * 19 17 15 23 23 C 1.38122 * 119.97497 * 90.00301 * 7 6 5 24 24 C 1.47474 * 87.83663 * 332.99067 * 5 4 2 25 25 H 1.08996 * 109.47186 * 287.05300 * 1 2 3 26 26 H 1.09000 * 109.47244 * 47.05360 * 1 2 3 27 27 H 1.08999 * 109.47034 * 167.04965 * 1 2 3 28 28 H 1.09006 * 109.46818 * 192.95041 * 3 2 1 29 29 H 1.08995 * 109.46805 * 312.94675 * 3 2 1 30 30 H 1.08989 * 109.47090 * 72.95147 * 3 2 1 31 31 H 1.09000 * 113.47771 * 24.90656 * 4 2 1 32 32 H 1.08997 * 113.47787 * 254.43902 * 4 2 1 33 33 H 1.08993 * 109.47513 * 50.00122 * 6 5 4 34 34 H 1.08998 * 109.46937 * 289.99833 * 6 5 4 35 35 H 1.08003 * 119.94130 * 0.05120 * 8 7 6 36 36 H 1.08008 * 119.97134 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.02588 * 180.02562 * 10 9 8 38 38 H 1.08996 * 109.46945 * 300.00498 * 13 12 11 39 39 H 1.09006 * 109.46787 * 59.99781 * 13 12 11 40 40 H 1.08996 * 109.47418 * 300.00504 * 14 13 12 41 41 H 1.09006 * 109.47277 * 60.00347 * 14 13 12 42 42 H 0.96993 * 120.00448 * 180.02562 * 18 17 15 43 43 H 1.08002 * 120.02504 * 359.97056 * 23 7 6 44 44 H 1.08998 * 113.47865 * 141.78144 * 24 5 4 45 45 H 1.09004 * 113.47668 * 272.24637 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1341 1.4058 0.0000 4 6 2.1585 -0.9542 1.0252 5 7 3.1618 -1.3058 0.0030 6 6 3.4330 -2.7496 0.0063 7 6 4.2661 -3.1070 -1.1976 8 6 3.6497 -3.4603 -2.3840 9 6 4.4110 -3.7891 -3.4900 10 6 5.7904 -3.7650 -3.4126 11 6 6.4110 -3.4058 -2.2253 12 8 7.7676 -3.3762 -2.1482 13 6 8.4922 -3.7217 -3.3303 14 6 9.9940 -3.6315 -3.0525 15 6 10.7583 -3.9952 -4.2993 16 1 10.2261 -4.2643 -5.1998 17 6 12.1370 -3.9856 -4.2903 18 7 12.7852 -3.6585 -3.1938 19 14 13.0844 -4.4371 -5.8357 20 1 12.1287 -4.7641 -6.9243 21 1 13.9328 -3.2905 -6.2490 22 1 13.9447 -5.6162 -5.5621 23 6 5.6446 -3.0819 -1.1149 24 6 2.1586 -0.9589 -1.0207 25 1 -0.3633 0.3014 0.9824 26 1 -0.3634 0.7002 -0.7522 27 1 -0.3633 -1.0015 -0.2303 28 1 3.1977 1.3441 -0.2303 29 1 1.6342 2.0159 -0.7522 30 1 2.0007 1.8585 0.9824 31 1 1.5090 -1.7853 1.3001 32 1 2.5810 -0.4443 1.8910 33 1 2.4908 -3.2964 -0.0285 34 1 3.9741 -3.0155 0.9144 35 1 2.5717 -3.4790 -2.4467 36 1 3.9272 -4.0644 -4.4156 37 1 6.3847 -4.0216 -4.2771 38 1 8.2378 -4.7388 -3.6282 39 1 8.2293 -3.0318 -4.1323 40 1 10.2480 -2.6142 -2.7549 41 1 10.2573 -4.3212 -2.2505 42 1 13.7550 -3.6513 -3.1875 43 1 6.1255 -2.8059 -0.1881 44 1 2.5811 -0.4530 -1.8889 45 1 1.5090 -1.7912 -1.2918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602750674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:54 Heat of formation + Delta-G solvation = -14.024699 kcal Electronic energy + Delta-G solvation = -22138.035252 eV Core-core repulsion = 18927.415708 eV Total energy + Delta-G solvation = -3210.619544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.67736 -40.87358 -38.57481 -35.51472 -34.58626 -32.61183 -31.96385 -30.60373 -28.28151 -27.93006 -26.93895 -26.84513 -24.18955 -23.34927 -23.01682 -21.45626 -19.38414 -19.05725 -18.15282 -17.07800 -16.97859 -16.89838 -16.53660 -16.49732 -16.16130 -16.09715 -14.94896 -14.61126 -14.37920 -14.35053 -14.25773 -14.18444 -13.90669 -13.44330 -13.20333 -13.06867 -12.92475 -12.72138 -12.65025 -12.56995 -12.45312 -12.33045 -11.94788 -11.80414 -11.64275 -11.56410 -11.42797 -11.34701 -11.03035 -10.64717 -9.91995 -9.68561 -9.11926 -8.28297 -6.42322 0.32807 0.50973 1.39817 1.41127 1.54629 2.25484 2.49530 2.73091 3.05998 3.23081 3.35469 3.74336 3.83519 3.89455 4.07491 4.16265 4.22936 4.24060 4.25036 4.33827 4.38780 4.47368 4.51198 4.62144 4.70513 4.71139 4.77935 4.81881 4.85319 4.89730 5.06912 5.07246 5.16784 5.18032 5.29292 5.33788 5.34727 5.41756 5.43953 5.49391 5.52632 5.61489 5.66932 5.88323 6.05558 6.14395 6.55432 6.72579 7.27913 8.85218 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031820 B = 0.002491 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.727181 B =11238.460793 C =11522.052327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.121 4.121 4 C 0.006 3.994 5 N -0.489 5.489 6 C 0.065 3.935 7 C -0.041 4.041 8 C -0.152 4.152 9 C -0.076 4.076 10 C -0.223 4.223 11 C 0.107 3.893 12 O -0.344 6.344 13 C 0.086 3.914 14 C 0.028 3.972 15 C -0.545 4.545 16 H 0.071 0.929 17 C 0.000 4.000 18 N -0.931 5.931 19 Si 0.978 3.022 20 H -0.257 1.257 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.157 4.157 24 C 0.007 3.993 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.127 0.873 38 H 0.060 0.940 39 H 0.058 0.942 40 H -0.003 1.003 41 H -0.002 1.002 42 H 0.267 0.733 43 H 0.118 0.882 44 H 0.068 0.932 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.874 4.392 4.934 29.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.179 4.179 4 C -0.123 4.123 5 N -0.211 5.211 6 C -0.062 4.062 7 C -0.042 4.042 8 C -0.171 4.171 9 C -0.094 4.094 10 C -0.242 4.242 11 C 0.061 3.939 12 O -0.258 6.258 13 C 0.011 3.989 14 C -0.009 4.009 15 C -0.583 4.583 16 H 0.089 0.911 17 C -0.199 4.199 18 N -0.571 5.571 19 Si 0.801 3.199 20 H -0.181 1.181 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.176 4.176 24 C -0.122 4.122 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.076 0.924 43 H 0.136 0.864 44 H 0.086 0.914 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -27.888 4.739 5.184 28.759 hybrid contribution 0.690 -0.718 -0.597 1.162 sum -27.198 4.021 4.587 27.874 Atomic orbital electron populations 1.21693 0.92040 1.02468 1.02675 1.21995 0.96235 0.94954 0.95872 1.21469 1.00176 0.93979 1.02240 1.24033 0.93149 0.98829 0.96267 1.69026 1.31055 1.15140 1.05843 1.21591 0.98815 0.90263 0.95571 1.19619 0.91746 0.96697 0.96099 1.21174 1.00756 1.03030 0.92098 1.21221 0.91911 0.96549 0.99715 1.21496 0.97253 1.08173 0.97309 1.19511 0.82612 0.96312 0.95435 1.86087 1.16127 1.84089 1.39525 1.22852 0.92112 0.99105 0.84810 1.18972 0.88894 0.96020 0.97063 1.21414 0.92075 1.47342 0.97449 0.91084 1.26076 0.98905 0.94644 1.00226 1.70126 1.08589 1.48747 1.29608 0.85208 0.78273 0.77965 0.78426 1.18080 1.20176 1.20155 1.20389 0.93630 1.06269 0.97305 1.24022 0.93217 0.98714 0.96211 0.91496 0.91856 0.91890 0.93608 0.91782 0.91687 0.89746 0.90037 0.90781 0.89899 0.83380 0.82973 0.85494 0.92145 0.92335 0.98463 0.98354 0.92404 0.86387 0.91394 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 9.29 71.98 0.67 -0.50 16 2 C -0.09 -1.19 1.52 -51.84 -0.08 -1.27 16 3 C -0.12 -1.77 9.22 71.98 0.66 -1.11 16 4 C 0.01 0.08 6.87 83.57 0.57 0.66 16 5 N -0.49 -9.66 6.22 -932.36 -5.80 -15.45 16 6 C 0.07 1.27 4.97 85.56 0.43 1.69 16 7 C -0.04 -1.04 5.18 -19.88 -0.10 -1.14 16 8 C -0.15 -3.32 9.12 22.28 0.20 -3.12 16 9 C -0.08 -1.84 10.04 22.25 0.22 -1.62 16 10 C -0.22 -7.12 9.04 22.37 0.20 -6.91 16 11 C 0.11 3.99 6.69 22.51 0.15 4.14 16 12 O -0.34 -15.53 10.14 -92.47 -0.94 -16.47 16 13 C 0.09 3.92 4.68 71.98 0.34 4.25 16 14 C 0.03 1.56 5.34 29.84 0.16 1.72 16 15 C -0.55 -31.39 9.11 25.60 0.23 -31.16 16 16 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 17 C 0.00 0.00 5.46 84.66 0.46 0.46 16 18 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 19 Si 0.98 44.07 29.54 68.60 2.03 46.09 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 23 C -0.16 -5.14 9.64 22.37 0.22 -4.93 16 24 C 0.01 0.11 5.94 83.57 0.50 0.61 16 25 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 27 H 0.06 0.48 7.90 -2.39 -0.02 0.46 16 28 H 0.04 0.88 7.93 -2.38 -0.02 0.86 16 29 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.93 7.73 -2.39 -0.02 0.91 16 32 H 0.08 1.22 8.11 -2.39 -0.02 1.20 16 33 H 0.07 1.07 7.50 -2.39 -0.02 1.06 16 34 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16 35 H 0.15 2.22 7.70 -2.91 -0.02 2.20 16 36 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.13 4.00 6.30 -2.91 -0.02 3.98 16 38 H 0.06 2.59 7.65 -2.39 -0.02 2.57 16 39 H 0.06 2.53 7.67 -2.38 -0.02 2.51 16 40 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 44 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 45 H 0.08 1.06 7.13 -2.39 -0.02 1.05 16 Total: -1.00 -68.75 365.45 1.35 -67.40 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.94 Total: 13.98 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 4.83 Total: -38.23 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -5.51 Total: -72.77 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.94 Total: -16.47 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.75 1.35 -67.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602750674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.376 kcal (2) G-P(sol) polarization free energy of solvation -68.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds