Wall clock time and date at job start Tue Mar 31 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47384 * 2 1 4 4 O 1.42899 * 109.50243 * 64.99589 * 3 2 1 5 5 C 1.53119 * 109.49945 * 304.92074 * 3 2 1 6 6 C 1.53130 * 109.15713 * 182.44156 * 5 3 2 7 7 C 1.53037 * 109.30431 * 57.60013 * 6 5 3 8 8 N 1.46849 * 109.52492 * 300.83491 * 7 6 5 9 9 C 1.46894 * 111.00095 * 185.84802 * 8 7 6 10 10 C 1.50698 * 109.47530 * 65.79084 * 9 8 7 11 11 C 1.38634 * 119.74836 * 269.72509 * 10 9 8 12 12 C 1.37617 * 120.24565 * 179.76135 * 11 10 9 13 13 C 1.40714 * 119.74630 * 0.49128 * 12 11 10 14 14 C 1.41391 * 120.24635 * 179.78581 * 13 12 11 15 15 H 1.08008 * 119.99852 * 24.36729 * 14 13 12 16 16 C 1.39947 * 120.00381 * 204.36359 * 14 13 12 17 17 N 1.30821 * 119.99695 * 17.85467 * 16 14 13 18 18 Si 1.86793 * 120.00316 * 197.85850 * 16 14 13 19 19 H 1.48503 * 109.47199 * 89.99977 * 18 16 14 20 20 H 1.48501 * 109.47462 * 210.00299 * 18 16 14 21 21 H 1.48506 * 109.46972 * 330.00093 * 18 16 14 22 22 C 1.40718 * 119.50933 * 359.76429 * 13 12 11 23 23 C 1.37615 * 119.74710 * 0.02562 * 22 13 12 24 24 C 1.46847 * 111.19347 * 61.74623 * 8 7 6 25 25 H 1.09004 * 109.46853 * 299.99957 * 1 2 3 26 26 H 1.08992 * 109.47272 * 60.00001 * 1 2 3 27 27 H 1.09004 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46942 * 120.00376 * 2 1 3 29 29 H 1.09002 * 109.47151 * 239.99605 * 2 1 3 30 30 H 0.96696 * 114.00073 * 300.00085 * 4 3 2 31 31 H 1.09001 * 109.52811 * 302.30827 * 5 3 2 32 32 H 1.09001 * 109.52397 * 62.50019 * 5 3 2 33 33 H 1.08999 * 109.47218 * 297.65743 * 6 5 3 34 34 H 1.09005 * 109.53586 * 177.57682 * 6 5 3 35 35 H 1.09007 * 109.45735 * 180.82516 * 7 6 5 36 36 H 1.08998 * 109.46635 * 60.85691 * 7 6 5 37 37 H 1.09003 * 109.47076 * 185.79470 * 9 8 7 38 38 H 1.09001 * 109.46952 * 305.78998 * 9 8 7 39 39 H 1.07996 * 119.87472 * 359.97438 * 11 10 9 40 40 H 1.07997 * 120.13017 * 180.23109 * 12 11 10 41 41 H 0.96999 * 120.00002 * 179.97438 * 17 16 14 42 42 H 1.08000 * 120.12766 * 180.02562 * 22 13 12 43 43 H 1.07998 * 119.87798 * 180.02562 * 23 22 13 44 44 H 1.09004 * 109.45870 * 178.24290 * 24 8 7 45 45 H 1.08999 * 109.46373 * 58.27643 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 1.6623 2.0820 1.2208 5 6 1.4315 2.1998 -1.1835 6 6 1.9939 3.6238 -1.2116 7 6 3.5203 3.5631 -1.3043 8 7 4.0534 2.8299 -0.1490 9 6 5.5216 2.8708 -0.1314 10 6 5.9821 4.2881 0.0931 11 6 6.2069 5.1187 -0.9938 12 6 6.6228 6.4162 -0.8005 13 6 6.8297 6.8956 0.5062 14 6 7.2613 8.2254 0.7169 15 1 7.0653 8.9814 -0.0291 16 6 7.9425 8.5622 1.8921 17 7 8.4862 7.6245 2.6246 18 14 8.0752 10.3505 2.4150 19 1 6.9195 10.7007 3.2793 20 1 9.3376 10.5531 3.1704 21 1 8.0741 11.2197 1.2109 22 6 6.6035 6.0418 1.6017 23 6 6.1837 4.7494 1.3848 24 6 3.5651 1.4452 -0.1278 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 0.7072 2.1174 1.3670 31 1 1.6864 1.6896 -2.1124 32 1 0.3477 2.2377 -1.0732 33 1 1.7051 4.1466 -0.2998 34 1 1.5976 4.1552 -2.0769 35 1 3.9242 4.5756 -1.3097 36 1 3.8084 3.0524 -2.2231 37 1 5.8932 2.2363 0.6732 38 1 5.9066 2.5106 -1.0854 39 1 6.0517 4.7472 -1.9959 40 1 6.7937 7.0627 -1.6484 41 1 8.9587 7.8579 3.4389 42 1 6.7589 6.3995 2.6088 43 1 6.0090 4.0924 2.2241 44 1 4.0016 0.9192 0.7213 45 1 3.8530 0.9443 -1.0521 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602983169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:45 Heat of formation + Delta-G solvation = -43.404693 kcal Electronic energy + Delta-G solvation = -23316.148887 eV Core-core repulsion = 20104.255331 eV Total energy + Delta-G solvation = -3211.893556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.78436 -37.72206 -36.04799 -33.76848 -33.03869 -32.26603 -30.26933 -29.33584 -28.74652 -26.73825 -24.78950 -23.47752 -22.62226 -21.03438 -20.79672 -19.64566 -19.53520 -17.22783 -16.44941 -15.96973 -15.30879 -15.13900 -14.72390 -14.46105 -14.31567 -13.96968 -13.72765 -13.41022 -13.25995 -12.72185 -12.47613 -12.40257 -12.30232 -11.86482 -11.83621 -11.61304 -11.47956 -11.32811 -11.22477 -11.03888 -10.96045 -10.74816 -10.67263 -10.42704 -10.26791 -10.02457 -9.62944 -9.47561 -9.29183 -9.07080 -7.78884 -7.35593 -7.21097 -6.70168 -4.28346 2.79931 3.10445 3.13909 3.14760 3.23011 3.97576 4.17840 4.32347 4.67792 4.68894 4.80479 4.84842 5.00936 5.13866 5.21476 5.44076 5.57909 5.61285 5.63537 5.71134 5.72826 5.75818 5.77849 5.89296 5.93241 5.97920 6.05966 6.07302 6.21961 6.28963 6.43775 6.47152 6.51663 6.55746 7.03111 7.13310 7.37303 7.42246 7.55394 7.58308 7.69564 7.82759 7.96222 8.12637 8.23412 8.37340 8.72023 8.96355 9.05401 10.24438 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031344 B = 0.003287 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.089735 B = 8517.242431 C = 8584.474289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.151 4.151 3 C 0.139 3.861 4 O -0.535 6.535 5 C -0.146 4.146 6 C -0.113 4.113 7 C 0.055 3.945 8 N -0.518 5.518 9 C 0.120 3.880 10 C -0.203 4.203 11 C -0.086 4.086 12 C -0.228 4.228 13 C 0.112 3.888 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.794 5.794 18 Si 0.907 3.093 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.263 1.263 22 C -0.166 4.166 23 C -0.077 4.077 24 C 0.070 3.930 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.363 0.637 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.019 0.981 37 H 0.064 0.936 38 H 0.020 0.980 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.279 0.721 42 H 0.116 0.884 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.448 -11.839 -4.661 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.190 4.190 3 C 0.098 3.902 4 O -0.339 6.339 5 C -0.183 4.183 6 C -0.151 4.151 7 C -0.073 4.073 8 N -0.242 5.242 9 C -0.006 4.006 10 C -0.205 4.205 11 C -0.105 4.105 12 C -0.247 4.247 13 C 0.110 3.890 14 C -0.494 4.494 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.419 5.419 18 Si 0.731 3.269 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.186 4.186 23 C -0.096 4.096 24 C -0.059 4.059 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.209 0.791 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.134 0.866 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.793 -11.588 -3.972 17.004 hybrid contribution -0.162 0.238 -0.576 0.644 sum -11.955 -11.351 -4.548 17.101 Atomic orbital electron populations 1.21839 0.95673 1.01916 1.01935 1.22204 0.96430 0.97509 1.02811 1.21191 0.94488 0.89855 0.84684 1.86755 1.26842 1.80968 1.39352 1.22323 1.00086 0.97413 0.98512 1.21517 0.95477 0.95801 1.02278 1.22119 0.94447 1.00452 0.90241 1.61909 1.08992 1.11488 1.41835 1.20736 0.85385 0.95985 0.98500 1.18825 1.13329 0.94739 0.93616 1.20329 1.00198 0.94306 0.95619 1.20911 1.12222 0.95331 0.96257 1.17609 0.87876 0.92883 0.90669 1.19587 1.32003 0.95104 1.02701 0.90586 1.25896 0.93177 0.99390 0.95672 1.69833 1.24508 1.34755 1.12801 0.86341 0.78302 0.82737 0.79479 1.19290 1.20391 1.18701 1.21304 1.04426 0.93516 0.99341 1.20488 0.98767 0.95776 0.94590 1.22001 0.92615 0.91107 1.00162 0.92570 0.92246 0.92572 0.91071 0.91349 0.79132 0.91859 0.91650 0.90472 0.92158 0.89180 0.96295 0.91725 0.96184 0.90038 0.89271 0.90962 0.86573 0.89510 0.90598 0.94571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.22 37.16 0.34 -0.80 16 2 C -0.15 -1.38 5.23 -26.73 -0.14 -1.52 16 3 C 0.14 1.63 0.75 -90.54 -0.07 1.56 16 4 O -0.53 -7.15 12.31 -35.23 -0.43 -7.58 16 5 C -0.15 -1.59 4.41 -26.60 -0.12 -1.71 16 6 C -0.11 -1.52 5.94 -26.65 -0.16 -1.68 16 7 C 0.06 0.89 5.16 -3.83 -0.02 0.87 16 8 N -0.52 -8.85 4.53 -236.12 -1.07 -9.92 16 9 C 0.12 2.22 5.11 -4.98 -0.03 2.20 16 10 C -0.20 -4.52 4.90 -104.33 -0.51 -5.04 16 11 C -0.09 -1.94 7.84 -39.66 -0.31 -2.25 16 12 C -0.23 -5.68 9.80 -38.87 -0.38 -6.06 16 13 C 0.11 3.05 5.58 -106.83 -0.60 2.46 16 14 C -0.46 -12.58 9.05 -37.74 -0.34 -12.92 16 15 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 16 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 17 N -0.79 -20.94 10.95 55.55 0.61 -20.33 16 18 Si 0.91 19.05 29.59 -169.99 -5.03 14.02 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 22 C -0.17 -4.45 8.70 -38.87 -0.34 -4.79 16 23 C -0.08 -1.88 9.67 -39.66 -0.38 -2.26 16 24 C 0.07 0.97 4.43 -3.84 -0.02 0.96 16 25 H 0.06 0.38 6.89 -51.93 -0.36 0.02 16 26 H 0.06 0.42 6.41 -51.93 -0.33 0.08 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.36 3.48 7.53 45.56 0.34 3.82 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.60 6.51 -51.93 -0.34 0.27 16 33 H 0.08 1.17 7.80 -51.93 -0.41 0.76 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.67 5.76 -51.92 -0.30 1.37 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 38 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 39 H 0.08 1.64 7.97 -52.49 -0.42 1.22 16 40 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 41 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 42 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 43 H 0.09 1.98 8.06 -52.49 -0.42 1.56 16 44 H 0.08 1.08 8.02 -51.93 -0.42 0.66 16 45 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -28.86 347.97 -10.57 -39.43 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.73 Total: 8.25 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: -3.15 Total: -29.11 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: -0.46 Total: -30.24 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.43 Total: -7.58 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.86 -10.57 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602983169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.976 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds