Wall clock time and date at job start Tue Mar 31 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47384 * 2 1 4 4 O 1.42899 * 109.50243 * 64.99589 * 3 2 1 5 5 C 1.53119 * 109.49945 * 304.92074 * 3 2 1 6 6 C 1.53130 * 109.15713 * 182.44156 * 5 3 2 7 7 C 1.53037 * 109.30431 * 57.60013 * 6 5 3 8 8 N 1.46849 * 109.52492 * 300.83491 * 7 6 5 9 9 C 1.46894 * 111.00095 * 185.84802 * 8 7 6 10 10 C 1.50698 * 109.47530 * 65.79084 * 9 8 7 11 11 C 1.38634 * 119.74836 * 269.72509 * 10 9 8 12 12 C 1.37617 * 120.24565 * 179.76135 * 11 10 9 13 13 C 1.40714 * 119.74630 * 0.49128 * 12 11 10 14 14 C 1.41391 * 120.24635 * 179.78581 * 13 12 11 15 15 H 1.08008 * 119.99852 * 24.36729 * 14 13 12 16 16 C 1.39947 * 120.00381 * 204.36359 * 14 13 12 17 17 N 1.30821 * 119.99695 * 17.85467 * 16 14 13 18 18 Si 1.86793 * 120.00316 * 197.85850 * 16 14 13 19 19 H 1.48503 * 109.47199 * 89.99977 * 18 16 14 20 20 H 1.48501 * 109.47462 * 210.00299 * 18 16 14 21 21 H 1.48506 * 109.46972 * 330.00093 * 18 16 14 22 22 C 1.40718 * 119.50933 * 359.76429 * 13 12 11 23 23 C 1.37615 * 119.74710 * 0.02562 * 22 13 12 24 24 C 1.46847 * 111.19347 * 61.74623 * 8 7 6 25 25 H 1.09004 * 109.46853 * 299.99957 * 1 2 3 26 26 H 1.08992 * 109.47272 * 60.00001 * 1 2 3 27 27 H 1.09004 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46942 * 120.00376 * 2 1 3 29 29 H 1.09002 * 109.47151 * 239.99605 * 2 1 3 30 30 H 0.96696 * 114.00073 * 300.00085 * 4 3 2 31 31 H 1.09001 * 109.52811 * 302.30827 * 5 3 2 32 32 H 1.09001 * 109.52397 * 62.50019 * 5 3 2 33 33 H 1.08999 * 109.47218 * 297.65743 * 6 5 3 34 34 H 1.09005 * 109.53586 * 177.57682 * 6 5 3 35 35 H 1.09007 * 109.45735 * 180.82516 * 7 6 5 36 36 H 1.08998 * 109.46635 * 60.85691 * 7 6 5 37 37 H 1.09003 * 109.47076 * 185.79470 * 9 8 7 38 38 H 1.09001 * 109.46952 * 305.78998 * 9 8 7 39 39 H 1.07996 * 119.87472 * 359.97438 * 11 10 9 40 40 H 1.07997 * 120.13017 * 180.23109 * 12 11 10 41 41 H 0.96999 * 120.00002 * 179.97438 * 17 16 14 42 42 H 1.08000 * 120.12766 * 180.02562 * 22 13 12 43 43 H 1.07998 * 119.87798 * 180.02562 * 23 22 13 44 44 H 1.09004 * 109.45870 * 178.24290 * 24 8 7 45 45 H 1.08999 * 109.46373 * 58.27643 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 1.6623 2.0820 1.2208 5 6 1.4315 2.1998 -1.1835 6 6 1.9939 3.6238 -1.2116 7 6 3.5203 3.5631 -1.3043 8 7 4.0534 2.8299 -0.1490 9 6 5.5216 2.8708 -0.1314 10 6 5.9821 4.2881 0.0931 11 6 6.2069 5.1187 -0.9938 12 6 6.6228 6.4162 -0.8005 13 6 6.8297 6.8956 0.5062 14 6 7.2613 8.2254 0.7169 15 1 7.0653 8.9814 -0.0291 16 6 7.9425 8.5622 1.8921 17 7 8.4862 7.6245 2.6246 18 14 8.0752 10.3505 2.4150 19 1 6.9195 10.7007 3.2793 20 1 9.3376 10.5531 3.1704 21 1 8.0741 11.2197 1.2109 22 6 6.6035 6.0418 1.6017 23 6 6.1837 4.7494 1.3848 24 6 3.5651 1.4452 -0.1278 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 0.7072 2.1174 1.3670 31 1 1.6864 1.6896 -2.1124 32 1 0.3477 2.2377 -1.0732 33 1 1.7051 4.1466 -0.2998 34 1 1.5976 4.1552 -2.0769 35 1 3.9242 4.5756 -1.3097 36 1 3.8084 3.0524 -2.2231 37 1 5.8932 2.2363 0.6732 38 1 5.9066 2.5106 -1.0854 39 1 6.0517 4.7472 -1.9959 40 1 6.7937 7.0627 -1.6484 41 1 8.9587 7.8579 3.4389 42 1 6.7589 6.3995 2.6088 43 1 6.0090 4.0924 2.2241 44 1 4.0016 0.9192 0.7213 45 1 3.8530 0.9443 -1.0521 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602983169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:45 Heat of formation + Delta-G solvation = -60.867501 kcal Electronic energy + Delta-G solvation = -23316.906131 eV Core-core repulsion = 20104.255331 eV Total energy + Delta-G solvation = -3212.650800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85637 -39.45543 -37.37045 -35.54939 -34.06225 -33.34153 -31.90839 -31.18896 -29.93252 -28.33565 -26.14289 -24.66597 -23.83375 -22.82258 -22.19003 -21.17158 -20.64080 -19.20014 -17.37533 -17.21519 -17.02631 -16.47339 -15.85862 -15.79114 -15.58836 -15.31428 -15.06838 -14.86621 -14.69219 -14.22940 -13.81363 -13.56100 -13.43890 -13.34910 -13.13711 -13.02664 -12.82670 -12.68638 -12.57184 -12.45361 -12.22318 -12.05232 -11.85621 -11.79467 -11.66781 -11.44359 -11.23226 -11.00555 -10.93789 -10.50865 -9.31961 -9.25313 -8.98065 -8.62143 -6.31238 0.96569 1.16882 1.37414 1.50916 1.51888 2.21220 2.68187 3.13048 3.40264 3.80974 3.83702 3.84434 3.98391 4.14962 4.25795 4.31076 4.36519 4.40253 4.55836 4.57221 4.61651 4.67419 4.68624 4.76329 4.79663 4.82888 4.96173 5.04241 5.06744 5.07809 5.14470 5.17389 5.24503 5.28697 5.39606 5.46343 5.48875 5.50784 5.73028 5.96787 6.12013 6.20205 6.33281 6.39249 6.41053 6.73176 6.96221 7.04292 7.06695 8.35079 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031344 B = 0.003287 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.089735 B = 8517.242431 C = 8584.474289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.144 4.144 3 C 0.138 3.862 4 O -0.562 6.562 5 C -0.138 4.138 6 C -0.110 4.110 7 C 0.055 3.945 8 N -0.536 5.536 9 C 0.125 3.875 10 C -0.191 4.191 11 C -0.080 4.080 12 C -0.242 4.242 13 C 0.080 3.920 14 C -0.503 4.503 15 H 0.074 0.926 16 C 0.034 3.966 17 N -0.827 5.827 18 Si 0.983 3.017 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.258 1.258 22 C -0.190 4.190 23 C -0.086 4.086 24 C 0.065 3.935 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.377 0.623 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.032 0.968 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.287 0.713 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.998 -13.134 -5.770 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.182 4.182 3 C 0.097 3.903 4 O -0.369 6.369 5 C -0.176 4.176 6 C -0.148 4.148 7 C -0.073 4.073 8 N -0.261 5.261 9 C -0.002 4.002 10 C -0.193 4.193 11 C -0.099 4.099 12 C -0.262 4.262 13 C 0.078 3.922 14 C -0.532 4.532 15 H 0.092 0.908 16 C -0.181 4.181 17 N -0.453 5.453 18 Si 0.803 3.197 19 H -0.188 1.188 20 H -0.191 1.191 21 H -0.182 1.182 22 C -0.210 4.210 23 C -0.105 4.105 24 C -0.063 4.063 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.226 0.774 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.087 0.913 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.363 -12.906 -5.092 19.263 hybrid contribution 0.273 0.496 -0.276 0.630 sum -13.090 -12.409 -5.368 18.819 Atomic orbital electron populations 1.21835 0.94145 1.02743 1.02436 1.22120 0.97686 0.95403 1.02996 1.21246 0.92978 0.91542 0.84494 1.86708 1.28455 1.81456 1.40270 1.22289 1.01222 0.95394 0.98679 1.21481 0.93745 0.97731 1.01845 1.22105 0.96099 0.98661 0.90442 1.61797 1.07691 1.13803 1.42775 1.20639 0.86920 0.93193 0.99429 1.19242 1.10865 0.96626 0.92554 1.20601 0.98750 0.93352 0.97195 1.21129 1.12698 0.96644 0.95727 1.17943 0.89013 0.93564 0.91714 1.19826 1.33859 0.95384 1.04180 0.90817 1.26772 0.92134 1.04106 0.95069 1.69890 1.25018 1.37030 1.13357 0.85203 0.78670 0.76687 0.79114 1.18806 1.19134 1.18151 1.21241 1.06422 0.94823 0.98516 1.20684 0.98648 0.95105 0.96091 1.22138 0.94366 0.89106 1.00676 0.92270 0.91551 0.91634 0.91729 0.90361 0.77433 0.90500 0.89459 0.92738 0.90597 0.92311 0.94948 0.91353 0.94687 0.87107 0.88647 0.90234 0.88531 0.88607 0.91290 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.22 71.98 0.66 -1.07 16 2 C -0.14 -2.18 5.23 30.59 0.16 -2.02 16 3 C 0.14 2.89 0.75 -10.74 -0.01 2.89 16 4 O -0.56 -14.14 12.31 -148.98 -1.83 -15.98 16 5 C -0.14 -2.57 4.41 30.68 0.14 -2.43 16 6 C -0.11 -2.75 5.94 30.65 0.18 -2.57 16 7 C 0.05 1.66 5.16 86.33 0.45 2.11 16 8 N -0.54 -17.54 4.53 -900.93 -4.08 -21.62 16 9 C 0.12 4.45 5.11 85.56 0.44 4.89 16 10 C -0.19 -8.48 4.90 -19.68 -0.10 -8.58 16 11 C -0.08 -3.61 7.84 22.22 0.17 -3.43 16 12 C -0.24 -12.38 9.80 22.73 0.22 -12.16 16 13 C 0.08 4.53 5.58 -21.29 -0.12 4.41 16 14 C -0.50 -28.36 9.05 23.46 0.21 -28.15 16 15 H 0.07 4.01 7.91 -2.91 -0.02 3.99 16 16 C 0.03 1.77 5.14 85.26 0.44 2.21 16 17 N -0.83 -45.14 10.95 21.83 0.24 -44.91 16 18 Si 0.98 39.76 29.59 68.60 2.03 41.79 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 20 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 22 C -0.19 -10.65 8.70 22.73 0.20 -10.45 16 23 C -0.09 -4.30 9.67 22.22 0.21 -4.08 16 24 C 0.06 1.67 4.43 86.32 0.38 2.06 16 25 H 0.06 0.63 6.89 -2.38 -0.02 0.61 16 26 H 0.07 0.66 6.41 -2.39 -0.02 0.65 16 27 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.38 6.56 7.53 -74.06 -0.56 6.00 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.27 6.51 -2.39 -0.02 1.26 16 33 H 0.05 1.60 7.80 -2.39 -0.02 1.59 16 34 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.06 2.14 5.76 -2.38 -0.01 2.13 16 36 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 2.37 7.93 -2.39 -0.02 2.35 16 38 H 0.04 1.15 8.06 -2.39 -0.02 1.13 16 39 H 0.11 4.27 7.97 -2.91 -0.02 4.25 16 40 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 41 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 42 H 0.10 5.67 6.16 -2.91 -0.02 5.66 16 43 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 44 H 0.07 1.86 8.02 -2.38 -0.02 1.84 16 45 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -64.58 347.97 0.41 -64.17 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.41 Total: 32.92 kcal Atomic # 6 Polarization: -60.02 SS G_CDS: 3.64 Total: -56.38 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -3.84 Total: -66.53 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -1.83 Total: -15.98 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -64.58 0.41 -64.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602983169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.306 kcal (2) G-P(sol) polarization free energy of solvation -64.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds