Wall clock time and date at job start Tue Mar 31 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46979 * 2 1 4 4 O 1.42902 * 109.50262 * 300.07892 * 3 2 1 5 5 C 1.53121 * 109.53616 * 60.17827 * 3 2 1 6 6 C 1.53113 * 109.16059 * 177.61402 * 5 3 2 7 7 C 1.53042 * 109.27902 * 302.34319 * 6 5 3 8 8 N 1.46854 * 109.52073 * 59.18101 * 7 6 5 9 9 C 1.46899 * 110.99731 * 174.15788 * 8 7 6 10 10 C 1.50692 * 109.47534 * 294.20903 * 9 8 7 11 11 C 1.38638 * 119.74756 * 89.99772 * 10 9 8 12 12 C 1.37621 * 120.24788 * 179.97438 * 11 10 9 13 13 C 1.40715 * 119.74415 * 0.02562 * 12 11 10 14 14 C 1.41394 * 120.24444 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00124 * 335.85007 * 14 13 12 16 16 C 1.39949 * 120.00422 * 156.12525 * 14 13 12 17 17 N 1.30826 * 119.99495 * 341.51339 * 16 14 13 18 18 Si 1.86796 * 120.00144 * 161.50447 * 16 14 13 19 19 H 1.48500 * 109.46771 * 90.00551 * 18 16 14 20 20 H 1.48507 * 109.47242 * 210.00059 * 18 16 14 21 21 H 1.48499 * 109.47148 * 330.00302 * 18 16 14 22 22 C 1.40718 * 119.51374 * 0.25097 * 13 12 11 23 23 C 1.37620 * 119.74390 * 359.49066 * 22 13 12 24 24 C 1.46846 * 111.19813 * 298.25993 * 8 7 6 25 25 H 1.09001 * 109.47134 * 300.00272 * 1 2 3 26 26 H 1.08999 * 109.47212 * 59.99921 * 1 2 3 27 27 H 1.08994 * 109.47321 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47153 * 240.00281 * 2 1 3 29 29 H 1.08999 * 109.47212 * 120.00079 * 2 1 3 30 30 H 0.96693 * 114.00189 * 59.92181 * 4 3 2 31 31 H 1.09001 * 109.52157 * 297.51977 * 5 3 2 32 32 H 1.08994 * 109.52054 * 57.70959 * 5 3 2 33 33 H 1.09004 * 109.50335 * 62.28408 * 6 5 3 34 34 H 1.08999 * 109.50646 * 182.40608 * 6 5 3 35 35 H 1.08994 * 109.46551 * 299.16544 * 7 6 5 36 36 H 1.09004 * 109.46191 * 179.19170 * 7 6 5 37 37 H 1.09001 * 109.46697 * 174.20588 * 9 8 7 38 38 H 1.08998 * 109.46909 * 54.21238 * 9 8 7 39 39 H 1.07998 * 119.87696 * 0.02562 * 11 10 9 40 40 H 1.08002 * 120.13021 * 179.97438 * 12 11 10 41 41 H 0.96997 * 119.99583 * 180.02562 * 17 16 14 42 42 H 1.07998 * 120.12589 * 179.75054 * 22 13 12 43 43 H 1.07999 * 119.87702 * 180.23172 * 23 22 13 44 44 H 1.08999 * 109.46084 * 181.76352 * 24 8 7 45 45 H 1.09000 * 109.45868 * 301.73692 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5625 2.1174 -1.1656 5 6 1.5340 2.1645 1.2520 6 6 2.0977 3.5879 1.2736 7 6 3.6265 3.5266 1.2367 8 7 4.0603 2.8275 0.0203 9 6 5.5221 2.8707 -0.1186 10 6 5.9639 4.2943 -0.3399 11 6 6.2741 5.0953 0.7483 12 6 6.6792 6.3968 0.5580 13 6 6.7774 6.9137 -0.7471 14 6 7.1919 8.2494 -0.9547 15 1 7.0630 8.9827 -0.1724 16 6 7.7641 8.6228 -2.1761 17 7 8.2472 7.7093 -2.9784 18 14 7.8378 10.4253 -2.6608 19 1 9.1070 11.0186 -2.1685 20 1 7.7773 10.5430 -4.1399 21 1 6.6878 11.1470 -2.0593 22 6 6.4544 6.0932 -1.8438 23 6 6.0567 4.7932 -1.6301 24 6 3.5703 1.4434 -0.0001 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5985 2.1548 -1.2313 31 1 0.4449 2.2042 1.2344 32 1 1.8656 1.6279 2.1408 33 1 1.7345 4.1364 0.4045 34 1 1.7758 4.0931 2.1842 35 1 3.9897 2.9900 2.1131 36 1 4.0307 4.5389 1.2375 37 1 5.8244 2.2600 -0.9694 38 1 5.9849 2.4836 0.7891 39 1 6.1984 4.6963 1.7490 40 1 6.9199 7.0192 1.4071 41 1 8.6441 7.9681 -3.8248 42 1 6.5224 6.4810 -2.8494 43 1 5.8119 4.1605 -2.4705 44 1 3.9339 0.9426 -0.8974 45 1 3.9337 0.9166 0.8823 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602983170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:48 Heat of formation + Delta-G solvation = -60.918252 kcal Electronic energy + Delta-G solvation = -23317.408928 eV Core-core repulsion = 20104.755926 eV Total energy + Delta-G solvation = -3212.653001 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.85497 -39.45329 -37.37778 -35.55230 -34.02685 -33.34187 -31.90540 -31.18935 -29.96538 -28.34586 -26.12266 -24.65912 -23.84396 -22.82147 -22.17951 -21.16832 -20.64871 -19.20052 -17.39372 -17.21138 -17.02155 -16.46759 -15.86268 -15.78104 -15.61176 -15.31598 -15.08576 -14.87397 -14.66940 -14.23116 -13.81383 -13.54636 -13.44364 -13.35106 -13.11329 -13.01550 -12.82792 -12.66075 -12.57396 -12.45469 -12.22434 -12.07355 -11.87474 -11.81518 -11.66297 -11.45161 -11.23886 -10.99294 -10.93442 -10.50884 -9.31754 -9.25380 -8.98011 -8.62710 -6.30803 0.96975 1.16965 1.37390 1.48445 1.54414 2.21191 2.68097 3.13048 3.40213 3.81195 3.83578 3.84399 3.98226 4.15042 4.25705 4.31199 4.36676 4.40014 4.56090 4.57137 4.61247 4.67515 4.68578 4.76746 4.79597 4.83005 4.95820 5.04414 5.06934 5.07935 5.13779 5.17283 5.23830 5.28972 5.39459 5.46217 5.48959 5.50726 5.73060 5.96937 6.11968 6.20337 6.33324 6.39330 6.41073 6.73082 6.96190 7.03885 7.06794 8.34679 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.031030 B = 0.003294 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.140286 B = 8498.258417 C = 8574.689634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.144 4.144 3 C 0.138 3.862 4 O -0.562 6.562 5 C -0.138 4.138 6 C -0.110 4.110 7 C 0.055 3.945 8 N -0.536 5.536 9 C 0.125 3.875 10 C -0.192 4.192 11 C -0.080 4.080 12 C -0.243 4.243 13 C 0.080 3.920 14 C -0.503 4.503 15 H 0.074 0.926 16 C 0.034 3.966 17 N -0.826 5.826 18 Si 0.981 3.019 19 H -0.260 1.260 20 H -0.266 1.266 21 H -0.260 1.260 22 C -0.191 4.191 23 C -0.086 4.086 24 C 0.065 3.935 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.377 0.623 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.287 0.713 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.477 -13.292 6.470 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.182 4.182 3 C 0.097 3.903 4 O -0.369 6.369 5 C -0.176 4.176 6 C -0.148 4.148 7 C -0.073 4.073 8 N -0.261 5.261 9 C -0.002 4.002 10 C -0.194 4.194 11 C -0.099 4.099 12 C -0.263 4.263 13 C 0.078 3.922 14 C -0.533 4.533 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.452 5.452 18 Si 0.802 3.198 19 H -0.185 1.185 20 H -0.191 1.191 21 H -0.184 1.184 22 C -0.211 4.211 23 C -0.105 4.105 24 C -0.063 4.063 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.226 0.774 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.087 0.913 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.909 -13.044 5.744 19.230 hybrid contribution 0.301 0.489 0.273 0.636 sum -12.608 -12.555 6.016 18.782 Atomic orbital electron populations 1.21820 0.94173 1.02799 1.02398 1.22113 0.97692 0.95401 1.02978 1.21249 0.92465 0.91253 0.85308 1.86708 1.26708 1.79648 1.43840 1.22272 1.01607 0.95572 0.98118 1.21477 0.93831 0.97727 1.01750 1.22108 0.96570 0.98898 0.89738 1.61801 1.10603 1.15060 1.38606 1.20636 0.86880 0.93083 0.99572 1.19242 1.10988 0.96618 0.92515 1.20602 0.98635 0.93468 0.97150 1.21131 1.12611 0.96535 0.96000 1.17939 0.88897 0.93524 0.91845 1.19815 1.37419 0.95581 1.00455 0.90789 1.26777 0.91762 1.04342 0.95161 1.69892 1.27381 1.37616 1.10323 0.85226 0.79780 0.76617 0.78199 1.18502 1.19061 1.18352 1.21231 1.06315 0.94902 0.98629 1.20683 0.98745 0.94931 0.96123 1.22137 0.94142 0.89043 1.00952 0.91582 0.92272 0.91569 0.91783 0.90291 0.77442 0.89550 0.90481 0.92729 0.90595 0.94943 0.92298 0.91357 0.94693 0.87113 0.88642 0.90218 0.88570 0.88618 0.91287 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.26 71.98 0.67 -1.09 16 2 C -0.14 -2.18 5.21 30.60 0.16 -2.02 16 3 C 0.14 2.90 0.75 -10.74 -0.01 2.89 16 4 O -0.56 -14.17 12.27 -148.98 -1.83 -16.00 16 5 C -0.14 -2.57 4.56 30.67 0.14 -2.43 16 6 C -0.11 -2.75 5.94 30.65 0.18 -2.57 16 7 C 0.05 1.66 5.15 86.33 0.44 2.11 16 8 N -0.54 -17.55 4.53 -900.93 -4.08 -21.63 16 9 C 0.13 4.46 5.11 85.55 0.44 4.90 16 10 C -0.19 -8.52 4.91 -19.68 -0.10 -8.61 16 11 C -0.08 -3.59 7.83 22.22 0.17 -3.42 16 12 C -0.24 -12.42 9.80 22.73 0.22 -12.20 16 13 C 0.08 4.55 5.58 -21.29 -0.12 4.43 16 14 C -0.50 -28.37 9.05 23.46 0.21 -28.16 16 15 H 0.07 4.02 7.91 -2.91 -0.02 3.99 16 16 C 0.03 1.80 5.13 85.26 0.44 2.23 16 17 N -0.83 -45.08 10.98 21.83 0.24 -44.84 16 18 Si 0.98 39.66 29.60 68.60 2.03 41.69 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 20 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 C -0.19 -10.70 8.70 22.73 0.20 -10.50 16 23 C -0.09 -4.28 9.67 22.22 0.21 -4.06 16 24 C 0.07 1.68 4.43 86.33 0.38 2.06 16 25 H 0.07 0.66 6.50 -2.39 -0.02 0.64 16 26 H 0.06 0.65 6.78 -2.39 -0.02 0.63 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.38 6.61 7.33 -74.06 -0.54 6.07 16 31 H 0.09 1.26 6.58 -2.39 -0.02 1.25 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.61 7.80 -2.38 -0.02 1.59 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 2.15 5.74 -2.39 -0.01 2.13 16 37 H 0.07 2.37 7.93 -2.39 -0.02 2.35 16 38 H 0.03 1.15 8.06 -2.39 -0.02 1.13 16 39 H 0.11 4.28 7.95 -2.91 -0.02 4.25 16 40 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 41 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 42 H 0.10 5.65 6.16 -2.91 -0.02 5.63 16 43 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 44 H 0.07 1.86 8.01 -2.39 -0.02 1.84 16 45 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -64.58 347.92 0.43 -64.15 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.42 Total: 33.08 kcal Atomic # 6 Polarization: -60.09 SS G_CDS: 3.65 Total: -56.44 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -3.84 Total: -66.47 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -1.83 Total: -16.00 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -64.58 0.43 -64.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602983170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.229 kcal (2) G-P(sol) polarization free energy of solvation -64.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds