Wall clock time and date at job start Tue Mar 31 2020 06:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47029 * 2 1 4 4 C 1.50695 * 109.47095 * 120.00306 * 2 1 3 5 5 C 1.38274 * 119.94091 * 119.99972 * 4 2 1 6 6 C 1.38144 * 120.05283 * 179.97438 * 5 4 2 7 7 C 1.38724 * 119.94711 * 359.97438 * 6 5 4 8 8 O 1.35903 * 120.05992 * 180.02562 * 7 6 5 9 9 C 1.42898 * 116.99453 * 354.37740 * 8 7 6 10 10 C 1.53076 * 109.45392 * 84.83034 * 9 8 7 11 11 C 1.53193 * 109.29669 * 181.23862 * 10 9 8 12 12 N 1.46929 * 108.89296 * 305.58045 * 11 10 9 13 13 C 1.36938 * 120.62591 * 233.51024 * 12 11 10 14 14 H 1.08008 * 119.99455 * 150.47016 * 13 12 11 15 15 C 1.38805 * 120.00189 * 330.47237 * 13 12 11 16 16 N 1.31617 * 119.99809 * 160.42591 * 15 13 12 17 17 Si 1.86799 * 120.00087 * 340.42250 * 15 13 12 18 18 H 1.48494 * 109.47149 * 87.80107 * 17 15 13 19 19 H 1.48501 * 109.47105 * 207.80482 * 17 15 13 20 20 H 1.48497 * 109.47011 * 327.80055 * 17 15 13 21 21 C 1.46927 * 118.73928 * 53.53594 * 12 11 10 22 22 C 1.53044 * 109.45634 * 205.04029 * 9 8 7 23 23 C 1.38737 * 119.88929 * 0.27677 * 7 6 5 24 24 C 1.38145 * 119.94051 * 359.46570 * 23 7 6 25 25 H 1.08995 * 109.47143 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46705 * 299.99490 * 1 2 3 27 27 H 1.09001 * 109.47154 * 59.99316 * 1 2 3 28 28 H 1.09004 * 109.46705 * 240.00510 * 2 1 3 29 29 H 1.09006 * 109.47301 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47711 * 300.00342 * 3 2 1 31 31 H 1.09004 * 109.46960 * 60.00666 * 3 2 1 32 32 H 1.07999 * 119.97068 * 359.97438 * 5 4 2 33 33 H 1.08000 * 120.02416 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.46060 * 325.00881 * 9 8 7 35 35 H 1.09005 * 109.39124 * 61.36400 * 10 9 8 36 36 H 1.09002 * 109.62169 * 301.25493 * 10 9 8 37 37 H 1.08990 * 109.58817 * 185.71800 * 11 10 9 38 38 H 1.09005 * 109.58331 * 65.43676 * 11 10 9 39 39 H 0.97002 * 120.00059 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.58821 * 66.17676 * 21 12 11 41 41 H 1.09004 * 109.58242 * 186.46318 * 21 12 11 42 42 H 1.08993 * 109.49880 * 58.66189 * 22 9 8 43 43 H 1.09003 * 109.49874 * 298.56101 * 22 9 8 44 44 H 1.08001 * 120.03096 * 179.72531 * 23 7 6 45 45 H 1.08004 * 119.97519 * 180.22649 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8273 -1.8346 1.1020 6 6 3.2895 -2.4874 2.2284 7 6 2.9559 -2.0139 3.4890 8 8 3.4098 -2.6540 4.5986 9 6 4.1214 -3.8766 4.3966 10 6 5.5939 -3.5686 4.1135 11 6 6.3470 -4.8797 3.8671 12 7 6.1242 -5.7781 5.0081 13 6 7.1829 -6.3340 5.6755 14 1 7.0936 -6.5747 6.7246 15 6 8.3706 -6.5882 5.0037 16 7 9.4878 -6.7497 5.6805 17 14 8.3834 -6.7011 3.1392 18 1 8.5819 -5.3471 2.5626 19 1 9.4898 -7.5913 2.7047 20 1 7.0886 -7.2548 2.6679 21 6 4.7439 -6.0691 5.4191 22 6 4.0092 -4.7451 5.6518 23 6 2.1540 -0.8889 3.6151 24 6 1.6987 -0.2365 2.4856 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 3.0870 -2.2025 0.1204 33 1 3.9099 -3.3656 2.1276 34 1 3.6943 -4.4094 3.5471 35 1 6.0279 -3.0556 4.9718 36 1 5.6719 -2.9330 3.2315 37 1 7.4128 -4.6754 3.7656 38 1 5.9763 -5.3482 2.9553 39 1 10.3180 -6.9270 5.2110 40 1 4.2402 -6.6334 4.6344 41 1 4.7521 -6.6516 6.3404 42 1 2.9588 -4.9442 5.8636 43 1 4.4587 -4.2233 6.4967 44 1 1.8893 -0.5209 4.5954 45 1 1.0774 0.6415 2.5832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603850700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:27 Heat of formation + Delta-G solvation = -5.769397 kcal Electronic energy + Delta-G solvation = -23138.199528 eV Core-core repulsion = 19927.937961 eV Total energy + Delta-G solvation = -3210.261567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.36289 -38.61474 -36.87960 -34.83286 -32.70879 -31.21101 -30.52777 -30.39661 -28.78403 -27.37173 -25.28850 -23.43751 -23.02116 -22.42063 -21.81377 -20.16373 -19.43100 -18.09283 -16.97725 -16.08965 -15.86342 -15.07446 -14.94141 -14.78860 -14.23808 -14.19191 -13.84052 -13.68062 -13.58807 -13.25857 -13.04019 -12.87487 -12.64785 -12.49533 -12.38876 -12.02989 -11.85655 -11.69096 -11.36549 -11.17353 -10.96926 -10.86997 -10.83000 -10.56951 -10.46154 -10.17724 -10.05533 -9.77120 -9.47781 -8.99486 -8.66734 -7.96938 -7.03870 -5.99436 -3.38406 1.33834 1.43925 3.27383 3.38258 3.44236 3.47029 3.74702 4.48369 4.52946 4.60965 4.83258 4.89680 4.97508 4.98562 5.09735 5.17693 5.22707 5.31041 5.32386 5.37400 5.40442 5.47073 5.57903 5.58445 5.69954 5.73809 5.74367 5.94606 5.96597 6.00303 6.01621 6.08731 6.16361 6.20717 6.27553 6.34630 6.43808 6.53497 6.56621 6.60108 6.63836 6.82865 6.86212 7.63088 7.92327 8.29161 8.88200 9.66383 10.03508 11.16492 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026643 B = 0.003557 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.687358 B = 7870.149433 C = 8478.535145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 C -0.144 4.144 4 C -0.125 4.125 5 C -0.077 4.077 6 C -0.208 4.208 7 C 0.138 3.862 8 O -0.313 6.313 9 C 0.093 3.907 10 C -0.157 4.157 11 C 0.128 3.872 12 N -0.606 5.606 13 C -0.263 4.263 14 H 0.086 0.914 15 C 0.026 3.974 16 N -0.907 5.907 17 Si 0.883 3.117 18 H -0.286 1.286 19 H -0.302 1.302 20 H -0.272 1.272 21 C 0.151 3.849 22 C -0.128 4.128 23 C -0.157 4.157 24 C -0.077 4.077 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.024 0.976 39 H 0.264 0.736 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.127 0.873 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.431 13.244 -10.088 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 C -0.201 4.201 4 C -0.126 4.126 5 C -0.095 4.095 6 C -0.227 4.227 7 C 0.092 3.908 8 O -0.227 6.227 9 C 0.038 3.962 10 C -0.197 4.197 11 C 0.002 3.998 12 N -0.329 5.329 13 C -0.391 4.391 14 H 0.104 0.896 15 C -0.174 4.174 16 N -0.549 5.549 17 Si 0.713 3.287 18 H -0.214 1.214 19 H -0.230 1.230 20 H -0.197 1.197 21 C 0.025 3.975 22 C -0.167 4.167 23 C -0.176 4.176 24 C -0.095 4.095 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.138 0.862 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.042 0.958 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.145 0.855 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.248 13.214 -9.856 23.859 hybrid contribution 0.318 -0.194 -1.234 1.289 sum -16.930 13.020 -11.090 24.065 Atomic orbital electron populations 1.21863 0.94639 1.01931 1.01660 1.20024 0.95670 0.95846 0.95398 1.21866 1.01323 0.95299 1.01654 1.19680 1.01011 0.97290 0.94572 1.20838 0.96140 0.94539 0.97982 1.21396 1.05763 1.03371 0.92121 1.19087 0.93013 0.92574 0.86088 1.86137 1.69038 1.37531 1.29984 1.22520 0.91586 0.82502 0.99599 1.22632 0.94766 1.00136 1.02129 1.21357 0.99657 0.88555 0.90239 1.44402 1.01762 1.51277 1.35493 1.18913 0.90107 1.36462 0.93663 0.89604 1.25332 0.95629 0.98807 0.97595 1.69823 0.98304 1.51352 1.35433 0.86980 0.77020 0.77018 0.87678 1.21354 1.22959 1.19736 1.20924 0.84984 0.92555 0.99046 1.22165 1.00623 0.97402 0.96527 1.20424 1.01321 0.96352 0.99495 1.20696 0.98745 0.98857 0.91211 0.92584 0.92530 0.92647 0.90762 0.92528 0.92645 0.92523 0.86168 0.85098 0.91568 0.90539 0.92205 0.90222 0.95814 0.92656 0.95732 0.90881 0.91761 0.90734 0.85481 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.01 37.16 0.33 -0.73 16 2 C -0.05 -0.43 3.09 -91.77 -0.28 -0.71 16 3 C -0.14 -1.10 9.00 37.15 0.33 -0.77 16 4 C -0.13 -1.36 4.78 -104.60 -0.50 -1.86 16 5 C -0.08 -0.92 9.66 -39.60 -0.38 -1.30 16 6 C -0.21 -2.88 8.23 -39.44 -0.32 -3.20 16 7 C 0.14 2.04 6.60 -39.22 -0.26 1.78 16 8 O -0.31 -5.13 9.80 -19.43 -0.19 -5.32 16 9 C 0.09 1.56 2.08 -26.67 -0.06 1.50 16 10 C -0.16 -2.89 5.33 -26.59 -0.14 -3.03 16 11 C 0.13 2.77 4.21 -3.71 -0.02 2.75 16 12 N -0.61 -14.24 2.74 -172.31 -0.47 -14.71 16 13 C -0.26 -7.30 10.02 -15.06 -0.15 -7.45 16 14 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 15 C 0.03 0.74 5.23 -17.43 -0.09 0.65 16 16 N -0.91 -27.67 13.97 55.49 0.78 -26.89 16 17 Si 0.88 22.18 24.37 -169.99 -4.14 18.04 16 18 H -0.29 -6.89 6.44 56.52 0.36 -6.52 16 19 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 20 H -0.27 -6.72 6.93 56.52 0.39 -6.33 16 21 C 0.15 2.91 6.52 -3.71 -0.02 2.88 16 22 C -0.13 -2.15 5.73 -26.61 -0.15 -2.30 16 23 C -0.16 -2.01 9.99 -39.43 -0.39 -2.40 16 24 C -0.08 -0.84 8.70 -39.61 -0.34 -1.19 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.40 7.39 -51.93 -0.38 0.02 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.42 7.38 -51.93 -0.38 0.03 16 32 H 0.12 1.21 7.94 -52.49 -0.42 0.80 16 33 H 0.13 1.84 5.44 -52.49 -0.29 1.55 16 34 H 0.07 1.06 6.32 -51.93 -0.33 0.73 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.06 1.00 6.92 -51.93 -0.36 0.65 16 37 H 0.08 1.90 4.59 -51.93 -0.24 1.66 16 38 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 45 H 0.12 1.06 7.09 -52.48 -0.37 0.69 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -30.25 345.16 -8.65 -38.90 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.37 Total: 0.15 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.45 Total: -15.37 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.30 Total: -41.61 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.19 Total: -5.32 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.04 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.25 -8.65 -38.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603850700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.135 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds