Wall clock time and date at job start Tue Mar 31 2020 06:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47029 * 2 1 4 4 C 1.50695 * 109.47095 * 120.00306 * 2 1 3 5 5 C 1.38274 * 119.94091 * 119.99972 * 4 2 1 6 6 C 1.38144 * 120.05283 * 179.97438 * 5 4 2 7 7 C 1.38724 * 119.94711 * 359.97438 * 6 5 4 8 8 O 1.35903 * 120.05992 * 180.02562 * 7 6 5 9 9 C 1.42898 * 116.99453 * 354.37740 * 8 7 6 10 10 C 1.53076 * 109.45392 * 84.83034 * 9 8 7 11 11 C 1.53193 * 109.29669 * 181.23862 * 10 9 8 12 12 N 1.46929 * 108.89296 * 305.58045 * 11 10 9 13 13 C 1.36938 * 120.62591 * 233.51024 * 12 11 10 14 14 H 1.08008 * 119.99455 * 150.47016 * 13 12 11 15 15 C 1.38805 * 120.00189 * 330.47237 * 13 12 11 16 16 N 1.31617 * 119.99809 * 160.42591 * 15 13 12 17 17 Si 1.86799 * 120.00087 * 340.42250 * 15 13 12 18 18 H 1.48494 * 109.47149 * 87.80107 * 17 15 13 19 19 H 1.48501 * 109.47105 * 207.80482 * 17 15 13 20 20 H 1.48497 * 109.47011 * 327.80055 * 17 15 13 21 21 C 1.46927 * 118.73928 * 53.53594 * 12 11 10 22 22 C 1.53044 * 109.45634 * 205.04029 * 9 8 7 23 23 C 1.38737 * 119.88929 * 0.27677 * 7 6 5 24 24 C 1.38145 * 119.94051 * 359.46570 * 23 7 6 25 25 H 1.08995 * 109.47143 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46705 * 299.99490 * 1 2 3 27 27 H 1.09001 * 109.47154 * 59.99316 * 1 2 3 28 28 H 1.09004 * 109.46705 * 240.00510 * 2 1 3 29 29 H 1.09006 * 109.47301 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47711 * 300.00342 * 3 2 1 31 31 H 1.09004 * 109.46960 * 60.00666 * 3 2 1 32 32 H 1.07999 * 119.97068 * 359.97438 * 5 4 2 33 33 H 1.08000 * 120.02416 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.46060 * 325.00881 * 9 8 7 35 35 H 1.09005 * 109.39124 * 61.36400 * 10 9 8 36 36 H 1.09002 * 109.62169 * 301.25493 * 10 9 8 37 37 H 1.08990 * 109.58817 * 185.71800 * 11 10 9 38 38 H 1.09005 * 109.58331 * 65.43676 * 11 10 9 39 39 H 0.97002 * 120.00059 * 180.02562 * 16 15 13 40 40 H 1.08995 * 109.58821 * 66.17676 * 21 12 11 41 41 H 1.09004 * 109.58242 * 186.46318 * 21 12 11 42 42 H 1.08993 * 109.49880 * 58.66189 * 22 9 8 43 43 H 1.09003 * 109.49874 * 298.56101 * 22 9 8 44 44 H 1.08001 * 120.03096 * 179.72531 * 23 7 6 45 45 H 1.08004 * 119.97519 * 180.22649 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8273 -1.8346 1.1020 6 6 3.2895 -2.4874 2.2284 7 6 2.9559 -2.0139 3.4890 8 8 3.4098 -2.6540 4.5986 9 6 4.1214 -3.8766 4.3966 10 6 5.5939 -3.5686 4.1135 11 6 6.3470 -4.8797 3.8671 12 7 6.1242 -5.7781 5.0081 13 6 7.1829 -6.3340 5.6755 14 1 7.0936 -6.5747 6.7246 15 6 8.3706 -6.5882 5.0037 16 7 9.4878 -6.7497 5.6805 17 14 8.3834 -6.7011 3.1392 18 1 8.5819 -5.3471 2.5626 19 1 9.4898 -7.5913 2.7047 20 1 7.0886 -7.2548 2.6679 21 6 4.7439 -6.0691 5.4191 22 6 4.0092 -4.7451 5.6518 23 6 2.1540 -0.8889 3.6151 24 6 1.6987 -0.2365 2.4856 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 3.0870 -2.2025 0.1204 33 1 3.9099 -3.3656 2.1276 34 1 3.6943 -4.4094 3.5471 35 1 6.0279 -3.0556 4.9718 36 1 5.6719 -2.9330 3.2315 37 1 7.4128 -4.6754 3.7656 38 1 5.9763 -5.3482 2.9553 39 1 10.3180 -6.9270 5.2110 40 1 4.2402 -6.6334 4.6344 41 1 4.7521 -6.6516 6.3404 42 1 2.9588 -4.9442 5.8636 43 1 4.4587 -4.2233 6.4967 44 1 1.8893 -0.5209 4.5954 45 1 1.0774 0.6415 2.5832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603850700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:27 Heat of formation + Delta-G solvation = -21.900987 kcal Electronic energy + Delta-G solvation = -23138.899046 eV Core-core repulsion = 19927.937961 eV Total energy + Delta-G solvation = -3210.961086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.45851 -39.75226 -38.30717 -35.70360 -34.56399 -32.57641 -32.13524 -31.71723 -29.74107 -27.92403 -27.02938 -24.79472 -24.34411 -23.49035 -23.22776 -21.30284 -20.65251 -19.20653 -18.91191 -17.43230 -16.92579 -16.51278 -16.24097 -15.97033 -15.76656 -15.33481 -15.15095 -14.79332 -14.56034 -14.37607 -14.29335 -14.15431 -14.04480 -13.64247 -13.60790 -13.42960 -13.08615 -12.76208 -12.59567 -12.40582 -12.25659 -12.14888 -11.92931 -11.82192 -11.67182 -11.65001 -11.52025 -11.39695 -11.18283 -10.71875 -9.92520 -8.99571 -8.97169 -8.19704 -5.55260 0.40896 0.48917 1.27934 1.39096 1.48410 2.21154 2.39178 2.81298 3.00537 3.29365 3.69461 3.74396 3.81837 3.88097 3.95318 4.05970 4.19847 4.21571 4.36000 4.38269 4.40417 4.46139 4.55192 4.60144 4.65557 4.71231 4.83941 4.86018 4.88523 4.93871 4.98658 5.01510 5.04472 5.08955 5.11405 5.18933 5.32052 5.37735 5.44259 5.46221 5.48726 5.75936 5.84567 5.90546 6.10431 6.50993 6.86886 7.56647 7.97345 9.00127 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026643 B = 0.003557 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.687358 B = 7870.149433 C = 8478.535145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.143 4.143 4 C -0.120 4.120 5 C -0.085 4.085 6 C -0.218 4.218 7 C 0.108 3.892 8 O -0.324 6.324 9 C 0.102 3.898 10 C -0.147 4.147 11 C 0.125 3.875 12 N -0.621 5.621 13 C -0.253 4.253 14 H 0.053 0.947 15 C -0.033 4.033 16 N -0.956 5.956 17 Si 0.946 3.054 18 H -0.270 1.270 19 H -0.309 1.309 20 H -0.260 1.260 21 C 0.147 3.853 22 C -0.119 4.119 23 C -0.164 4.164 24 C -0.075 4.075 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.040 0.960 39 H 0.263 0.737 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.135 0.865 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.060 14.816 -12.614 27.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.201 4.201 4 C -0.120 4.120 5 C -0.103 4.103 6 C -0.237 4.237 7 C 0.063 3.937 8 O -0.238 6.238 9 C 0.046 3.954 10 C -0.186 4.186 11 C 0.000 4.000 12 N -0.345 5.345 13 C -0.383 4.383 14 H 0.070 0.930 15 C -0.228 4.228 16 N -0.602 5.602 17 Si 0.774 3.226 18 H -0.197 1.197 19 H -0.237 1.237 20 H -0.185 1.185 21 C 0.022 3.978 22 C -0.158 4.158 23 C -0.182 4.182 24 C -0.093 4.093 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.144 0.856 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.077 0.923 44 H 0.152 0.848 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.933 14.813 -12.398 27.757 hybrid contribution 1.022 -0.578 -0.425 1.248 sum -18.912 14.235 -12.823 26.920 Atomic orbital electron populations 1.21853 0.93650 1.01841 1.02591 1.20089 0.96417 0.96087 0.94326 1.21861 1.00755 0.94835 1.02602 1.20038 0.99703 0.96636 0.95610 1.21105 0.96143 0.94823 0.98230 1.21443 1.06219 1.03615 0.92435 1.19354 0.94701 0.93707 0.85942 1.86096 1.69351 1.37398 1.31004 1.22305 0.90386 0.83046 0.99684 1.22462 0.95768 0.98320 1.02052 1.21369 0.98813 0.89801 0.90063 1.44525 1.02415 1.51794 1.35809 1.18853 0.91408 1.35324 0.92683 0.92966 1.25978 0.95226 0.99443 1.02166 1.69960 0.98987 1.53940 1.37302 0.85945 0.77052 0.77493 0.82104 1.19679 1.23719 1.18472 1.21096 0.83060 0.94201 0.99409 1.22009 1.01727 0.95884 0.96180 1.20658 1.01018 0.95937 1.00634 1.20996 0.98367 0.99236 0.90659 0.93185 0.92180 0.91226 0.90239 0.93425 0.91182 0.92185 0.84489 0.85583 0.90297 0.92494 0.90535 0.92665 0.94245 0.92845 0.93729 0.91285 0.88868 0.92325 0.84756 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.01 71.98 0.65 -0.98 16 2 C -0.05 -0.69 3.09 -11.54 -0.04 -0.73 16 3 C -0.14 -1.73 9.00 71.98 0.65 -1.08 16 4 C -0.12 -2.25 4.78 -19.85 -0.09 -2.34 16 5 C -0.09 -1.82 9.66 22.26 0.22 -1.61 16 6 C -0.22 -5.63 8.23 22.36 0.18 -5.44 16 7 C 0.11 3.01 6.60 22.51 0.15 3.16 16 8 O -0.32 -10.17 9.80 -92.46 -0.91 -11.08 16 9 C 0.10 3.22 2.08 30.63 0.06 3.28 16 10 C -0.15 -5.25 5.33 30.68 0.16 -5.09 16 11 C 0.12 5.27 4.21 86.36 0.36 5.63 16 12 N -0.62 -29.07 2.74 -699.08 -1.92 -30.99 16 13 C -0.25 -14.40 10.02 84.03 0.84 -13.56 16 14 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 15 C -0.03 -1.94 5.23 84.86 0.44 -1.50 16 16 N -0.96 -60.39 13.97 21.65 0.30 -60.08 16 17 Si 0.95 46.16 24.37 68.60 1.67 47.83 16 18 H -0.27 -12.39 6.44 99.48 0.64 -11.75 16 19 H -0.31 -15.29 7.11 99.48 0.71 -14.58 16 20 H -0.26 -12.06 6.93 99.48 0.69 -11.37 16 21 C 0.15 5.51 6.52 86.36 0.56 6.07 16 22 C -0.12 -3.83 5.73 30.67 0.18 -3.65 16 23 C -0.16 -3.86 9.99 22.37 0.22 -3.64 16 24 C -0.07 -1.42 8.70 22.25 0.19 -1.23 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.65 7.39 -2.38 -0.02 0.63 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 1.02 7.87 -2.38 -0.02 1.00 16 29 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.68 7.38 -2.38 -0.02 0.67 16 32 H 0.14 2.39 7.94 -2.91 -0.02 2.37 16 33 H 0.13 3.29 5.44 -2.91 -0.02 3.27 16 34 H 0.08 2.32 6.32 -2.39 -0.02 2.31 16 35 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.08 2.46 6.92 -2.39 -0.02 2.45 16 37 H 0.06 2.59 4.59 -2.39 -0.01 2.58 16 38 H 0.04 1.56 7.20 -2.38 -0.02 1.54 16 39 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 2.60 7.93 -2.38 -0.02 2.58 16 42 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.13 2.87 8.06 -2.91 -0.02 2.84 16 45 H 0.15 2.03 7.09 -2.91 -0.02 2.01 16 Total: -1.00 -66.35 345.16 4.77 -61.58 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.87 Total: 15.46 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 4.75 Total: -22.71 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -1.61 Total: -91.07 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -0.91 Total: -11.08 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.67 Total: 47.83 kcal Total: -66.35 4.77 -61.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603850700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.680 kcal (2) G-P(sol) polarization free energy of solvation -66.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds