Wall clock time and date at job start Tue Mar 31 2020 06:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 C 1.52999 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.47076 * 180.02562 * 4 3 2 6 6 C 1.38361 * 119.85196 * 270.25154 * 5 4 3 7 7 C 1.37955 * 120.14138 * 180.25817 * 6 5 4 8 8 C 1.39575 * 119.85263 * 359.49245 * 7 6 5 9 9 C 1.47848 * 120.14487 * 180.27853 * 8 7 6 10 10 O 1.21550 * 119.99883 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00150 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00008 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47072 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47040 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.47202 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99553 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00012 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00070 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99920 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47220 * 59.99930 * 19 17 15 21 21 H 1.48502 * 109.47149 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46972 * 300.00329 * 19 17 15 23 23 C 1.39579 * 119.71401 * 0.25207 * 8 7 6 24 24 C 1.37958 * 119.84937 * 0.02562 * 23 8 7 25 25 H 1.08999 * 109.46636 * 299.99806 * 1 2 3 26 26 H 1.08995 * 109.47176 * 60.00085 * 1 2 3 27 27 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47072 * 240.00028 * 2 1 3 29 29 H 1.09008 * 109.47356 * 120.00057 * 2 1 3 30 30 H 1.09004 * 109.47067 * 60.00025 * 3 2 1 31 31 H 1.08994 * 109.47476 * 300.00173 * 3 2 1 32 32 H 1.08997 * 109.47366 * 60.00289 * 4 3 2 33 33 H 1.09000 * 109.47611 * 300.00081 * 4 3 2 34 34 H 1.07998 * 119.92846 * 0.02562 * 6 5 4 35 35 H 1.08002 * 120.07573 * 179.77464 * 7 6 5 36 36 H 0.96996 * 119.99601 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.47252 * 300.00049 * 12 11 9 38 38 H 1.09007 * 109.46893 * 60.00137 * 12 11 9 39 39 H 1.09005 * 109.46987 * 299.99854 * 13 12 11 40 40 H 1.08998 * 109.47290 * 60.00029 * 13 12 11 41 41 H 1.09005 * 109.46818 * 299.99598 * 14 13 12 42 42 H 1.08993 * 109.47662 * 60.00361 * 14 13 12 43 43 H 0.97002 * 119.99545 * 180.02562 * 18 17 15 44 44 H 1.07997 * 120.07575 * 180.02562 * 23 8 7 45 45 H 1.08006 * 119.92205 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 6 4.2975 3.5148 -1.1984 7 6 4.7623 4.8136 -1.2049 8 6 4.9955 5.4741 0.0024 9 6 5.4878 6.8682 0.0031 10 8 5.6909 7.4415 -1.0493 11 7 5.7125 7.5030 1.1706 12 6 6.2008 8.8842 1.1712 13 6 6.3702 9.3646 2.6139 14 6 6.8797 10.8073 2.6145 15 6 7.0471 11.2803 4.0356 16 1 6.8132 10.6182 4.8562 17 6 7.4990 12.5581 4.2881 18 7 7.7844 13.3641 3.2888 19 14 7.7059 13.1447 6.0495 20 1 8.6837 12.2735 6.7498 21 1 8.2017 14.5445 6.0502 22 1 6.3974 13.0820 6.7490 23 6 4.7613 4.8129 1.2092 24 6 4.3019 3.5121 1.2016 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 4.1124 3.0041 -2.1319 35 1 4.9411 5.3199 -2.1420 36 1 5.5508 7.0453 2.0104 37 1 7.1610 8.9303 0.6574 38 1 5.4828 9.5237 0.6577 39 1 5.4098 9.3186 3.1273 40 1 7.0880 8.7252 3.1279 41 1 7.8401 10.8536 2.1010 42 1 6.1617 11.4464 2.1008 43 1 8.1027 14.2631 3.4666 44 1 4.9393 5.3185 2.1468 45 1 4.1206 2.9992 2.1347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609141997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:10 Heat of formation + Delta-G solvation = -56.572646 kcal Electronic energy + Delta-G solvation = -21229.080294 eV Core-core repulsion = 18016.615732 eV Total energy + Delta-G solvation = -3212.464562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.25167 -38.70401 -36.08321 -35.43362 -33.42236 -32.69016 -31.43286 -30.90679 -29.08030 -26.77053 -24.95173 -23.27562 -22.78734 -21.97189 -21.38917 -20.66891 -19.96949 -17.84502 -16.51812 -16.18069 -15.75732 -15.53405 -15.30934 -14.82801 -14.74130 -14.49198 -14.42250 -13.91913 -13.81392 -13.46068 -13.25808 -12.99756 -12.72555 -12.27503 -12.03703 -11.86327 -11.73597 -11.72072 -11.53774 -11.25183 -11.10861 -10.93971 -10.88815 -10.72859 -10.63205 -9.95157 -9.87171 -9.39826 -9.21170 -9.13431 -9.01586 -8.71530 -8.37147 -6.01799 -4.05082 0.68706 1.15845 2.85746 3.31879 3.34866 3.36855 3.39660 3.74515 4.26785 4.42498 4.44079 4.60716 4.61898 4.68750 4.76856 4.86199 4.94980 5.12967 5.23749 5.25181 5.26548 5.33804 5.39176 5.47568 5.55827 5.61796 5.72487 5.74451 5.77073 5.77154 5.83257 5.93269 6.08212 6.15340 6.20142 6.30512 6.46142 6.58899 6.66435 6.82540 6.99226 7.62915 7.68944 7.75699 7.96614 8.34568 8.38902 9.01211 9.58997 11.09383 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028034 B = 0.002112 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.546920 B =13254.137392 C =13956.318882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.084 4.084 5 C -0.062 4.062 6 C -0.127 4.127 7 C -0.059 4.059 8 C -0.134 4.134 9 C 0.550 3.450 10 O -0.542 6.542 11 N -0.720 5.720 12 C 0.116 3.884 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.083 4.083 24 C -0.126 4.126 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.397 0.603 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.262 0.738 44 H 0.128 0.872 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.366 -27.691 -6.398 30.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.121 4.121 5 C -0.062 4.062 6 C -0.145 4.145 7 C -0.078 4.078 8 C -0.137 4.137 9 C 0.337 3.663 10 O -0.421 6.421 11 N -0.371 5.371 12 C -0.007 4.007 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.102 4.102 24 C -0.144 4.144 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.232 0.768 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.146 0.854 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.143 -27.052 -7.182 30.126 hybrid contribution 0.104 0.283 1.427 1.459 sum -11.039 -26.769 -5.754 29.522 Atomic orbital electron populations 1.21778 0.95810 1.01592 1.01963 1.21548 0.95973 0.96694 1.02044 1.21617 0.94059 0.96904 1.02710 1.20686 0.95854 0.92394 1.03166 1.20094 0.96838 0.96115 0.93185 1.21011 1.00958 0.94737 0.97787 1.21286 0.94679 0.93907 0.97881 1.20067 1.04537 0.94612 0.94445 1.18311 0.77964 0.85838 0.84186 1.90763 1.52337 1.67697 1.31258 1.46148 1.66984 1.16005 1.07983 1.21687 0.99367 0.79746 0.99859 1.21897 1.00896 1.00911 0.92213 1.19031 0.96557 0.88459 0.97355 1.21164 1.44511 0.98231 0.92278 0.92697 1.25030 0.95466 0.96867 0.97095 1.69958 1.45032 1.07499 1.30724 0.86637 0.78466 0.77746 0.84998 1.20262 1.21261 1.20251 1.21350 0.96884 0.94791 0.97198 1.20966 1.00877 0.94707 0.97807 0.92684 0.92704 0.92798 0.92000 0.91976 0.91660 0.91679 0.90789 0.90767 0.85533 0.84650 0.76784 0.91578 0.91587 0.92699 0.92693 0.96224 0.96225 0.92870 0.85445 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.40 16 2 C -0.13 -0.62 5.93 -26.73 -0.16 -0.78 16 3 C -0.12 -0.66 5.20 -26.73 -0.14 -0.80 16 4 C -0.08 -0.50 5.34 -27.88 -0.15 -0.65 16 5 C -0.06 -0.51 5.14 -104.53 -0.54 -1.05 16 6 C -0.13 -1.16 9.68 -39.64 -0.38 -1.54 16 7 C -0.06 -0.68 9.60 -39.19 -0.38 -1.06 16 8 C -0.13 -1.70 5.87 -104.97 -0.62 -2.31 16 9 C 0.55 8.79 7.77 -12.33 -0.10 8.69 16 10 O -0.54 -10.65 16.35 5.32 0.09 -10.56 16 11 N -0.72 -10.83 5.51 -61.25 -0.34 -11.16 16 12 C 0.12 2.09 5.67 -4.04 -0.02 2.06 16 13 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 19 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.08 -0.85 9.54 -39.18 -0.37 -1.22 16 24 C -0.13 -1.08 9.68 -39.64 -0.38 -1.47 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.14 1.61 7.65 -52.49 -0.40 1.20 16 36 H 0.40 4.80 6.51 -40.82 -0.27 4.54 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.13 1.06 6.41 -52.49 -0.34 0.73 16 45 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -32.50 374.89 -10.17 -42.67 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.73 Total: -0.96 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -3.56 Total: -16.02 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.40 Total: -37.27 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.50 -10.17 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.906 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds