Wall clock time and date at job start Tue Mar 31 2020 06:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 C 1.52999 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.47076 * 180.02562 * 4 3 2 6 6 C 1.38361 * 119.85196 * 270.25154 * 5 4 3 7 7 C 1.37955 * 120.14138 * 180.25817 * 6 5 4 8 8 C 1.39575 * 119.85263 * 359.49245 * 7 6 5 9 9 C 1.47848 * 120.14487 * 180.27853 * 8 7 6 10 10 O 1.21550 * 119.99883 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00150 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00008 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47072 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47040 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.47202 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99553 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00012 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00070 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99920 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47220 * 59.99930 * 19 17 15 21 21 H 1.48502 * 109.47149 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46972 * 300.00329 * 19 17 15 23 23 C 1.39579 * 119.71401 * 0.25207 * 8 7 6 24 24 C 1.37958 * 119.84937 * 0.02562 * 23 8 7 25 25 H 1.08999 * 109.46636 * 299.99806 * 1 2 3 26 26 H 1.08995 * 109.47176 * 60.00085 * 1 2 3 27 27 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47072 * 240.00028 * 2 1 3 29 29 H 1.09008 * 109.47356 * 120.00057 * 2 1 3 30 30 H 1.09004 * 109.47067 * 60.00025 * 3 2 1 31 31 H 1.08994 * 109.47476 * 300.00173 * 3 2 1 32 32 H 1.08997 * 109.47366 * 60.00289 * 4 3 2 33 33 H 1.09000 * 109.47611 * 300.00081 * 4 3 2 34 34 H 1.07998 * 119.92846 * 0.02562 * 6 5 4 35 35 H 1.08002 * 120.07573 * 179.77464 * 7 6 5 36 36 H 0.96996 * 119.99601 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.47252 * 300.00049 * 12 11 9 38 38 H 1.09007 * 109.46893 * 60.00137 * 12 11 9 39 39 H 1.09005 * 109.46987 * 299.99854 * 13 12 11 40 40 H 1.08998 * 109.47290 * 60.00029 * 13 12 11 41 41 H 1.09005 * 109.46818 * 299.99598 * 14 13 12 42 42 H 1.08993 * 109.47662 * 60.00361 * 14 13 12 43 43 H 0.97002 * 119.99545 * 180.02562 * 18 17 15 44 44 H 1.07997 * 120.07575 * 180.02562 * 23 8 7 45 45 H 1.08006 * 119.92205 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 6 4.2975 3.5148 -1.1984 7 6 4.7623 4.8136 -1.2049 8 6 4.9955 5.4741 0.0024 9 6 5.4878 6.8682 0.0031 10 8 5.6909 7.4415 -1.0493 11 7 5.7125 7.5030 1.1706 12 6 6.2008 8.8842 1.1712 13 6 6.3702 9.3646 2.6139 14 6 6.8797 10.8073 2.6145 15 6 7.0471 11.2803 4.0356 16 1 6.8132 10.6182 4.8562 17 6 7.4990 12.5581 4.2881 18 7 7.7844 13.3641 3.2888 19 14 7.7059 13.1447 6.0495 20 1 8.6837 12.2735 6.7498 21 1 8.2017 14.5445 6.0502 22 1 6.3974 13.0820 6.7490 23 6 4.7613 4.8129 1.2092 24 6 4.3019 3.5121 1.2016 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 4.1124 3.0041 -2.1319 35 1 4.9411 5.3199 -2.1420 36 1 5.5508 7.0453 2.0104 37 1 7.1610 8.9303 0.6574 38 1 5.4828 9.5237 0.6577 39 1 5.4098 9.3186 3.1273 40 1 7.0880 8.7252 3.1279 41 1 7.8401 10.8536 2.1010 42 1 6.1617 11.4464 2.1008 43 1 8.1027 14.2631 3.4666 44 1 4.9393 5.3185 2.1468 45 1 4.1206 2.9992 2.1347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609141997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:09 Heat of formation + Delta-G solvation = -74.223162 kcal Electronic energy + Delta-G solvation = -21229.845678 eV Core-core repulsion = 18016.615732 eV Total energy + Delta-G solvation = -3213.229945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28725 -39.68833 -37.04178 -36.56980 -35.26016 -33.60937 -32.82938 -31.87559 -29.87363 -28.43399 -25.89135 -24.75599 -23.57853 -22.86753 -22.32904 -21.85440 -21.10132 -18.99834 -18.45644 -17.30240 -16.75226 -16.53623 -16.39101 -16.30115 -15.78571 -15.52023 -15.47093 -14.89109 -14.68135 -14.42690 -14.15189 -13.79845 -13.74315 -13.71621 -13.51643 -13.35104 -12.72619 -12.62256 -12.54981 -12.43789 -12.24860 -12.00457 -11.84345 -11.69407 -11.67400 -11.56360 -11.35193 -11.27774 -10.96724 -10.55052 -10.24294 -9.96086 -9.66248 -8.19422 -6.31247 -0.17546 0.41194 1.41680 1.44887 1.52756 1.79906 2.11528 2.42580 2.85086 3.14145 3.61435 3.80977 3.84493 4.00540 4.11574 4.16542 4.17953 4.20632 4.36910 4.39365 4.44475 4.51642 4.62657 4.74471 4.86171 4.91263 4.93275 4.93876 4.96850 5.05273 5.09162 5.14808 5.20967 5.31385 5.34443 5.37372 5.40226 5.40915 5.50941 5.54310 5.64657 5.69028 5.83136 5.94124 6.21319 6.49548 6.85731 7.13947 7.38287 8.92397 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028034 B = 0.002112 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.546920 B =13254.137392 C =13956.318882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.113 4.113 4 C -0.080 4.080 5 C -0.053 4.053 6 C -0.127 4.127 7 C -0.074 4.074 8 C -0.159 4.159 9 C 0.548 3.452 10 O -0.589 6.589 11 N -0.709 5.709 12 C 0.129 3.871 13 C -0.101 4.101 14 C 0.023 3.977 15 C -0.542 4.542 16 H 0.068 0.932 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.265 1.265 23 C -0.082 4.082 24 C -0.125 4.125 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.147 0.853 35 H 0.121 0.879 36 H 0.414 0.586 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.069 0.931 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.145 0.855 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.217 -30.514 -4.256 33.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C -0.150 4.150 4 C -0.118 4.118 5 C -0.054 4.054 6 C -0.145 4.145 7 C -0.093 4.093 8 C -0.162 4.162 9 C 0.337 3.663 10 O -0.472 6.472 11 N -0.361 5.361 12 C 0.005 3.995 13 C -0.139 4.139 14 C -0.015 4.015 15 C -0.580 4.580 16 H 0.086 0.914 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.190 1.190 23 C -0.100 4.100 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.165 0.835 35 H 0.139 0.861 36 H 0.252 0.748 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.011 0.989 42 H 0.011 0.989 43 H 0.072 0.928 44 H 0.163 0.837 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.009 -29.916 -5.008 32.624 hybrid contribution 0.327 1.073 0.707 1.326 sum -11.682 -28.844 -4.300 31.415 Atomic orbital electron populations 1.21798 0.96044 1.01838 1.01697 1.21531 0.95761 0.96172 1.02565 1.21580 0.93854 0.97363 1.02224 1.20736 0.95800 0.90785 1.04433 1.20454 0.95044 0.97157 0.92711 1.21235 1.00210 0.93696 0.99340 1.21325 0.95746 0.95109 0.97141 1.19871 1.07234 0.92955 0.96105 1.18887 0.76927 0.87053 0.83400 1.90731 1.54492 1.69079 1.32849 1.45897 1.66584 1.14713 1.08879 1.21291 0.98391 0.81354 0.98489 1.21604 1.01647 0.97314 0.93360 1.18952 0.94705 0.91806 0.96047 1.21648 1.44170 0.98757 0.93455 0.91430 1.26041 0.95052 0.97153 1.01918 1.70112 1.46077 1.07916 1.33356 0.85451 0.79001 0.77114 0.79159 1.19012 1.21189 1.18991 1.21552 0.96279 0.95474 0.96721 1.21321 0.99718 0.94041 0.99154 0.92919 0.93039 0.92332 0.91555 0.91368 0.92023 0.92371 0.89771 0.89349 0.83480 0.86087 0.74778 0.93081 0.93101 0.91206 0.91191 0.98930 0.98933 0.92833 0.83730 0.82695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.91 71.98 0.71 -0.56 16 2 C -0.12 -0.90 5.93 30.59 0.18 -0.71 16 3 C -0.11 -0.99 5.20 30.59 0.16 -0.83 16 4 C -0.08 -0.68 5.34 29.85 0.16 -0.52 16 5 C -0.05 -0.73 5.14 -19.80 -0.10 -0.84 16 6 C -0.13 -2.12 9.68 22.23 0.22 -1.90 16 7 C -0.07 -1.73 9.60 22.53 0.22 -1.51 16 8 C -0.16 -3.98 5.87 -20.09 -0.12 -4.10 16 9 C 0.55 17.90 7.77 86.79 0.67 18.57 16 10 O -0.59 -24.38 16.35 -3.87 -0.06 -24.44 16 11 N -0.71 -21.16 5.51 -465.97 -2.57 -23.72 16 12 C 0.13 4.74 5.67 86.38 0.49 5.23 16 13 C -0.10 -3.96 5.27 30.59 0.16 -3.80 16 14 C 0.02 1.19 4.97 29.85 0.15 1.34 16 15 C -0.54 -30.38 9.11 25.60 0.23 -30.14 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 17 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 18 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 19 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 C -0.08 -1.48 9.54 22.53 0.21 -1.27 16 24 C -0.12 -1.75 9.68 22.23 0.22 -1.53 16 25 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 33 H 0.09 0.56 8.08 -2.39 -0.02 0.54 16 34 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.12 3.07 7.65 -2.91 -0.02 3.05 16 36 H 0.41 9.35 6.51 -92.71 -0.60 8.74 16 37 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 41 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 42 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.15 2.01 6.41 -2.91 -0.02 1.99 16 45 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -72.12 374.89 4.05 -68.07 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.35 Total: 13.67 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 4.02 Total: -22.34 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -2.28 Total: -80.82 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.06 Total: -24.44 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -72.12 4.05 -68.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.157 kcal (2) G-P(sol) polarization free energy of solvation -72.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds