Wall clock time and date at job start Tue Mar 31 2020 06:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 C 1.53005 * 109.47283 * 239.99992 * 2 1 3 5 5 C 1.50699 * 109.47060 * 59.99839 * 4 2 1 6 6 H 1.08000 * 119.99934 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99821 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00332 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99924 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46976 * 59.99847 * 9 7 5 11 11 H 1.48498 * 109.46871 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46774 * 299.99922 * 9 7 5 13 13 C 1.52998 * 109.47137 * 119.99850 * 2 1 3 14 14 N 1.46902 * 109.47321 * 282.80698 * 13 2 1 15 15 C 1.46043 * 110.99784 * 68.51900 * 14 13 2 16 16 C 1.51345 * 113.62381 * 56.43008 * 15 14 13 17 17 O 1.43286 * 110.77234 * 65.22204 * 16 15 14 18 18 C 1.36130 * 115.32918 * 274.40880 * 17 16 15 19 19 C 1.38774 * 120.19175 * 249.24745 * 18 17 16 20 20 C 1.38200 * 119.66143 * 178.65427 * 19 18 17 21 21 C 1.38278 * 120.21447 * 359.74062 * 20 19 18 22 22 C 1.38398 * 120.11348 * 0.48860 * 21 20 19 23 23 C 1.37976 * 119.66087 * 0.10792 * 22 21 20 24 24 C 1.46721 * 111.00157 * 194.50394 * 14 13 2 25 25 H 1.08997 * 109.47320 * 328.10024 * 1 2 3 26 26 H 1.08997 * 109.47188 * 88.10761 * 1 2 3 27 27 H 1.09000 * 109.46732 * 208.10320 * 1 2 3 28 28 H 1.09002 * 109.47083 * 175.07142 * 3 2 1 29 29 H 1.08999 * 109.47107 * 295.06824 * 3 2 1 30 30 H 1.08996 * 109.47330 * 55.07279 * 3 2 1 31 31 H 1.09004 * 109.47013 * 179.97438 * 4 2 1 32 32 H 1.08993 * 109.47072 * 300.00025 * 4 2 1 33 33 H 0.96997 * 120.00472 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47274 * 162.80851 * 13 2 1 35 35 H 1.08992 * 109.47376 * 42.80625 * 13 2 1 36 36 H 1.09003 * 108.65264 * 295.36072 * 15 14 13 37 37 H 1.09001 * 108.65540 * 177.50628 * 15 14 13 38 38 H 1.09002 * 109.21378 * 304.88803 * 16 15 14 39 39 H 1.08998 * 109.18530 * 185.53823 * 16 15 14 40 40 H 1.08000 * 120.17259 * 358.66871 * 19 18 17 41 41 H 1.08000 * 119.89308 * 179.76940 * 20 19 18 42 42 H 1.08003 * 119.94872 * 180.46325 * 21 20 19 43 43 H 1.07997 * 120.16866 * 179.82561 * 22 21 20 44 44 H 1.08994 * 109.58710 * 78.91917 * 24 14 13 45 45 H 1.09003 * 109.58490 * 199.19945 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 1 0.9164 0.8669 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6274 -1.5509 -3.8526 9 14 1.2491 0.3994 -5.2572 10 1 1.7441 1.7994 -5.2566 11 1 1.7441 -0.3008 -6.4696 12 1 -0.2359 0.3993 -5.2577 13 6 2.0400 -0.7212 1.2492 14 7 1.9138 0.1664 2.4130 15 6 0.5107 0.3891 2.7515 16 6 -0.2603 -0.8869 3.0119 17 8 0.2388 -1.5532 4.1781 18 6 1.3010 -2.3781 3.9677 19 6 1.1512 -3.7527 4.0852 20 6 2.2300 -4.5816 3.8419 21 6 3.4515 -4.0452 3.4780 22 6 3.6019 -2.6740 3.3654 23 6 2.5280 -1.8461 3.6203 24 6 2.6931 -0.3406 3.5480 25 1 -0.3634 0.8724 0.5430 26 1 -0.3633 0.0339 -1.0271 27 1 -0.3633 -0.9065 0.4841 28 1 3.1264 1.4439 0.0883 29 1 1.7505 1.9302 -0.9309 30 1 1.6064 1.9812 0.8425 31 1 3.1301 -0.7208 -1.2495 32 1 1.6767 -1.7489 -1.2493 33 1 2.8624 -1.8819 -4.7336 34 1 3.0867 -0.9919 1.1107 35 1 1.4503 -1.6228 1.4144 36 1 0.0341 0.9228 1.9292 37 1 0.4622 1.0140 3.6433 38 1 -0.1612 -1.5479 2.1509 39 1 -1.3130 -0.6456 3.1594 40 1 0.1964 -4.1727 4.3651 41 1 2.1186 -5.6517 3.9359 42 1 4.2897 -4.6973 3.2816 43 1 4.5562 -2.2540 3.0840 44 1 3.7456 -0.0949 3.4074 45 1 2.3321 0.1132 4.4709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611262811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:25 Heat of formation + Delta-G solvation = -1.708795 kcal Electronic energy + Delta-G solvation = -24501.176716 eV Core-core repulsion = 21291.091229 eV Total energy + Delta-G solvation = -3210.085486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95061 -38.17852 -37.15544 -35.01115 -32.42079 -31.68145 -30.53827 -28.58083 -27.25468 -26.37285 -26.11009 -25.13132 -23.05533 -22.55816 -21.24685 -20.46339 -18.27697 -17.35246 -16.56360 -16.19670 -15.78055 -15.55794 -15.28386 -14.77033 -14.44878 -14.31316 -13.91318 -13.51993 -13.13337 -12.82966 -12.70626 -12.64018 -12.22103 -12.10077 -11.94560 -11.62920 -11.39578 -11.18243 -10.99739 -10.91341 -10.79722 -10.71428 -10.30944 -10.19687 -10.09134 -9.90194 -9.64926 -9.02579 -8.89703 -8.83451 -8.48252 -8.31333 -7.98183 -5.96151 -3.96385 1.20119 1.31894 3.34365 3.39254 3.39756 3.41286 3.95000 4.26766 4.49314 4.73679 4.79708 4.99732 5.05326 5.19082 5.22561 5.29166 5.39425 5.42634 5.51541 5.58235 5.60862 5.73254 5.85106 5.89814 5.95375 5.98593 6.13791 6.25559 6.31706 6.32643 6.45463 6.48160 6.51098 6.66340 6.70369 6.77188 6.89116 7.21521 7.24126 7.25501 7.39173 7.45143 7.49966 7.71214 7.86688 8.03718 8.47830 9.08707 9.66150 11.15385 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.004732 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.494017 B = 5916.225719 C = 6481.487012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.111 4.111 4 C 0.037 3.963 5 C -0.508 4.508 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.065 3.935 14 N -0.519 5.519 15 C 0.007 3.993 16 C 0.023 3.977 17 O -0.331 6.331 18 C 0.100 3.900 19 C -0.135 4.135 20 C -0.108 4.108 21 C -0.128 4.128 22 C -0.092 4.092 23 C -0.143 4.143 24 C 0.096 3.904 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.015 0.985 32 H 0.011 0.989 33 H 0.259 0.741 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.084 0.916 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 -1.524 16.598 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.057 4.057 3 C -0.169 4.169 4 C -0.001 4.001 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.062 4.062 14 N -0.240 5.240 15 C -0.122 4.122 16 C -0.053 4.053 17 O -0.248 6.248 18 C 0.056 3.944 19 C -0.154 4.154 20 C -0.126 4.126 21 C -0.146 4.146 22 C -0.111 4.111 23 C -0.145 4.145 24 C -0.032 4.032 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.129 0.871 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.103 0.897 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.578 -1.107 16.505 16.617 hybrid contribution -0.537 -0.588 -0.893 1.196 sum -2.115 -1.695 15.612 15.846 Atomic orbital electron populations 1.22326 0.96448 0.98546 1.02772 1.20629 0.94388 0.96407 0.94306 1.21596 0.99872 0.95387 1.00008 1.19104 0.96050 0.94918 0.89992 1.21183 1.30880 1.11925 0.90601 0.92301 1.25008 0.95398 0.95084 0.99016 1.69955 1.37164 1.23164 1.23399 0.86736 0.79130 0.79857 0.82735 1.20290 1.21454 1.20375 1.22433 1.01039 0.93122 0.89625 1.61954 1.09342 1.47885 1.04778 1.22736 0.89329 0.96879 1.03214 1.23383 0.98674 0.95726 0.87489 1.86297 1.45964 1.59340 1.33193 1.18545 0.87024 0.89378 0.99501 1.21188 0.99742 0.91928 1.02521 1.21008 0.92667 0.99575 0.99341 1.21202 0.97703 0.95237 1.00475 1.21000 0.98234 0.93248 0.98581 1.21142 0.93674 0.98508 1.01155 1.21437 0.99777 0.87412 0.94573 0.93776 0.90798 0.94596 0.94121 0.92711 0.94025 0.96714 0.97069 0.93104 0.91249 0.95118 0.87136 0.90977 0.91183 0.88330 0.85599 0.85758 0.85805 0.85468 0.89743 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.31 37.16 0.27 -2.33 16 2 C -0.06 -1.12 0.53 -154.50 -0.08 -1.20 16 3 C -0.11 -2.12 7.65 37.16 0.28 -1.83 16 4 C 0.04 0.92 3.97 -27.88 -0.11 0.81 16 5 C -0.51 -13.72 7.19 -34.44 -0.25 -13.97 16 6 H 0.06 1.54 6.02 -52.49 -0.32 1.23 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.06 1.13 3.12 -3.82 -0.01 1.12 16 14 N -0.52 -7.71 3.62 -237.43 -0.86 -8.57 16 15 C 0.01 0.09 4.57 -5.12 -0.02 0.07 16 16 C 0.02 0.31 5.72 36.32 0.21 0.52 16 17 O -0.33 -4.81 10.04 -20.15 -0.20 -5.01 16 18 C 0.10 1.44 5.23 -39.41 -0.21 1.23 16 19 C -0.14 -1.76 10.01 -39.40 -0.39 -2.16 16 20 C -0.11 -1.26 10.03 -39.58 -0.40 -1.66 16 21 C -0.13 -1.52 10.05 -39.51 -0.40 -1.92 16 22 C -0.09 -1.18 9.55 -39.62 -0.38 -1.56 16 23 C -0.14 -1.99 3.53 -104.29 -0.37 -2.35 16 24 C 0.10 1.29 5.71 -4.62 -0.03 1.26 16 25 H 0.04 0.69 5.28 -51.93 -0.27 0.41 16 26 H 0.07 1.51 6.26 -51.93 -0.33 1.19 16 27 H 0.04 0.60 5.41 -51.93 -0.28 0.32 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 1.13 6.47 -51.93 -0.34 0.79 16 30 H 0.04 0.70 6.50 -51.93 -0.34 0.36 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 1.29 7.72 -51.93 -0.40 0.89 16 35 H 0.03 0.56 4.70 -51.93 -0.24 0.32 16 36 H 0.11 1.51 3.72 -51.93 -0.19 1.32 16 37 H 0.07 0.90 7.90 -51.93 -0.41 0.49 16 38 H 0.07 1.05 4.27 -51.93 -0.22 0.83 16 39 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 43 H 0.13 1.45 7.99 -52.49 -0.42 1.03 16 44 H 0.08 1.06 7.93 -51.93 -0.41 0.64 16 45 H 0.08 1.03 7.76 -51.93 -0.40 0.63 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -29.79 330.41 -9.01 -38.80 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.67 Total: 1.88 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -1.98 Total: -22.52 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: -0.12 Total: -34.55 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.20 Total: -5.01 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.79 -9.01 -38.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611262811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.090 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds