Wall clock time and date at job start Tue Mar 31 2020 06:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 C 1.53005 * 109.47283 * 239.99992 * 2 1 3 5 5 C 1.50699 * 109.47060 * 59.99839 * 4 2 1 6 6 H 1.08000 * 119.99934 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99821 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00332 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99924 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46976 * 59.99847 * 9 7 5 11 11 H 1.48498 * 109.46871 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46774 * 299.99922 * 9 7 5 13 13 C 1.52998 * 109.47137 * 119.99850 * 2 1 3 14 14 N 1.46902 * 109.47321 * 282.80698 * 13 2 1 15 15 C 1.46043 * 110.99784 * 68.51900 * 14 13 2 16 16 C 1.51345 * 113.62381 * 56.43008 * 15 14 13 17 17 O 1.43286 * 110.77234 * 65.22204 * 16 15 14 18 18 C 1.36130 * 115.32918 * 274.40880 * 17 16 15 19 19 C 1.38774 * 120.19175 * 249.24745 * 18 17 16 20 20 C 1.38200 * 119.66143 * 178.65427 * 19 18 17 21 21 C 1.38278 * 120.21447 * 359.74062 * 20 19 18 22 22 C 1.38398 * 120.11348 * 0.48860 * 21 20 19 23 23 C 1.37976 * 119.66087 * 0.10792 * 22 21 20 24 24 C 1.46721 * 111.00157 * 194.50394 * 14 13 2 25 25 H 1.08997 * 109.47320 * 328.10024 * 1 2 3 26 26 H 1.08997 * 109.47188 * 88.10761 * 1 2 3 27 27 H 1.09000 * 109.46732 * 208.10320 * 1 2 3 28 28 H 1.09002 * 109.47083 * 175.07142 * 3 2 1 29 29 H 1.08999 * 109.47107 * 295.06824 * 3 2 1 30 30 H 1.08996 * 109.47330 * 55.07279 * 3 2 1 31 31 H 1.09004 * 109.47013 * 179.97438 * 4 2 1 32 32 H 1.08993 * 109.47072 * 300.00025 * 4 2 1 33 33 H 0.96997 * 120.00472 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47274 * 162.80851 * 13 2 1 35 35 H 1.08992 * 109.47376 * 42.80625 * 13 2 1 36 36 H 1.09003 * 108.65264 * 295.36072 * 15 14 13 37 37 H 1.09001 * 108.65540 * 177.50628 * 15 14 13 38 38 H 1.09002 * 109.21378 * 304.88803 * 16 15 14 39 39 H 1.08998 * 109.18530 * 185.53823 * 16 15 14 40 40 H 1.08000 * 120.17259 * 358.66871 * 19 18 17 41 41 H 1.08000 * 119.89308 * 179.76940 * 20 19 18 42 42 H 1.08003 * 119.94872 * 180.46325 * 21 20 19 43 43 H 1.07997 * 120.16866 * 179.82561 * 22 21 20 44 44 H 1.08994 * 109.58710 * 78.91917 * 24 14 13 45 45 H 1.09003 * 109.58490 * 199.19945 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 1 0.9164 0.8669 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6274 -1.5509 -3.8526 9 14 1.2491 0.3994 -5.2572 10 1 1.7441 1.7994 -5.2566 11 1 1.7441 -0.3008 -6.4696 12 1 -0.2359 0.3993 -5.2577 13 6 2.0400 -0.7212 1.2492 14 7 1.9138 0.1664 2.4130 15 6 0.5107 0.3891 2.7515 16 6 -0.2603 -0.8869 3.0119 17 8 0.2388 -1.5532 4.1781 18 6 1.3010 -2.3781 3.9677 19 6 1.1512 -3.7527 4.0852 20 6 2.2300 -4.5816 3.8419 21 6 3.4515 -4.0452 3.4780 22 6 3.6019 -2.6740 3.3654 23 6 2.5280 -1.8461 3.6203 24 6 2.6931 -0.3406 3.5480 25 1 -0.3634 0.8724 0.5430 26 1 -0.3633 0.0339 -1.0271 27 1 -0.3633 -0.9065 0.4841 28 1 3.1264 1.4439 0.0883 29 1 1.7505 1.9302 -0.9309 30 1 1.6064 1.9812 0.8425 31 1 3.1301 -0.7208 -1.2495 32 1 1.6767 -1.7489 -1.2493 33 1 2.8624 -1.8819 -4.7336 34 1 3.0867 -0.9919 1.1107 35 1 1.4503 -1.6228 1.4144 36 1 0.0341 0.9228 1.9292 37 1 0.4622 1.0140 3.6433 38 1 -0.1612 -1.5479 2.1509 39 1 -1.3130 -0.6456 3.1594 40 1 0.1964 -4.1727 4.3651 41 1 2.1186 -5.6517 3.9359 42 1 4.2897 -4.6973 3.2816 43 1 4.5562 -2.2540 3.0840 44 1 3.7456 -0.0949 3.4074 45 1 2.3321 0.1132 4.4709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611262811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:25 Heat of formation + Delta-G solvation = -18.398715 kcal Electronic energy + Delta-G solvation = -24501.900445 eV Core-core repulsion = 21291.091229 eV Total energy + Delta-G solvation = -3210.809216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.04054 -39.44182 -38.25405 -36.47921 -34.33802 -32.85461 -31.54231 -29.71513 -29.15875 -27.87938 -27.46430 -26.31897 -24.89358 -23.61678 -22.28099 -21.67857 -19.70944 -18.55124 -18.30610 -17.63715 -16.90021 -16.73348 -16.52773 -16.22301 -15.85428 -15.55639 -15.00425 -14.80674 -14.55656 -14.31933 -14.17518 -13.92218 -13.83351 -13.32631 -13.11730 -12.92634 -12.78803 -12.67356 -12.60224 -12.37400 -12.22034 -12.19300 -12.10487 -11.70484 -11.65561 -11.25311 -11.15622 -10.82260 -10.66651 -10.48783 -9.89475 -9.50362 -9.16976 -8.12810 -6.19783 0.21004 0.33851 1.41815 1.43952 1.51163 2.40543 2.44627 2.91851 3.11246 3.21011 3.73305 3.80298 3.95843 4.02728 4.07112 4.14838 4.28715 4.32190 4.33940 4.45639 4.49608 4.54215 4.60851 4.71265 4.78836 4.80734 4.88654 4.96901 4.99183 5.02766 5.08911 5.25807 5.29562 5.35794 5.48772 5.51578 5.53179 5.57567 5.65009 5.69720 5.77087 5.88328 5.93151 6.08136 6.23466 6.36504 6.45747 6.94880 7.47272 8.99394 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.004732 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.494017 B = 5916.225719 C = 6481.487012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C -0.101 4.101 4 C 0.045 3.955 5 C -0.512 4.512 6 H 0.068 0.932 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.084 3.916 14 N -0.520 5.520 15 C 0.007 3.993 16 C 0.025 3.975 17 O -0.338 6.338 18 C 0.078 3.922 19 C -0.147 4.147 20 C -0.108 4.108 21 C -0.134 4.134 22 C -0.106 4.106 23 C -0.157 4.157 24 C 0.098 3.902 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.030 0.970 29 H 0.037 0.963 30 H 0.069 0.931 31 H -0.018 1.018 32 H -0.022 1.022 33 H 0.259 0.741 34 H 0.051 0.949 35 H 0.021 0.979 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.090 0.910 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.776 -0.639 17.592 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.053 4.053 3 C -0.159 4.159 4 C 0.008 3.992 5 C -0.551 4.551 6 H 0.086 0.914 7 C -0.200 4.200 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.043 4.043 14 N -0.241 5.241 15 C -0.121 4.121 16 C -0.051 4.051 17 O -0.255 6.255 18 C 0.034 3.966 19 C -0.166 4.166 20 C -0.127 4.127 21 C -0.151 4.151 22 C -0.124 4.124 23 C -0.159 4.159 24 C -0.030 4.030 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.000 1.000 32 H -0.003 1.003 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.142 0.858 40 H 0.156 0.844 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.154 0.846 44 H 0.109 0.891 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.607 -0.207 17.518 17.712 hybrid contribution -0.184 -0.925 -1.141 1.480 sum -2.792 -1.132 16.377 16.652 Atomic orbital electron populations 1.22239 0.94822 1.00593 1.01708 1.20487 0.95665 0.96371 0.92819 1.21500 0.99369 0.94797 1.00212 1.18960 0.93844 0.93748 0.92664 1.21565 1.30247 1.11922 0.91320 0.91419 1.25914 0.95706 0.95864 1.02558 1.70106 1.38835 1.24978 1.24060 0.85643 0.78961 0.78813 0.78507 1.19271 1.21488 1.19230 1.22028 0.99485 0.92897 0.89917 1.61877 1.10678 1.46976 1.04553 1.22779 0.88272 0.97196 1.03882 1.23421 1.00012 0.94994 0.86638 1.86284 1.46047 1.59546 1.33599 1.18799 0.87203 0.90061 1.00517 1.21460 1.00800 0.91751 1.02557 1.21369 0.92144 1.00931 0.98207 1.21551 0.98652 0.95229 0.99712 1.21255 0.98555 0.93947 0.98668 1.21221 0.93985 0.98777 1.01882 1.21467 0.99925 0.87436 0.94153 0.90585 0.93408 0.93721 0.95085 0.94402 0.91232 1.00008 1.00319 0.93203 0.93050 0.96049 0.87121 0.89233 0.93173 0.85847 0.84443 0.83080 0.83607 0.84586 0.89139 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 7.31 71.98 0.53 -4.29 16 2 C -0.05 -2.08 0.53 -52.18 -0.03 -2.11 16 3 C -0.10 -3.78 7.65 71.98 0.55 -3.23 16 4 C 0.05 2.36 3.97 29.85 0.12 2.48 16 5 C -0.51 -28.16 7.19 25.60 0.18 -27.98 16 6 H 0.07 3.54 6.02 -2.91 -0.02 3.52 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -57.48 13.29 21.45 0.28 -57.19 16 9 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 C 0.08 2.95 3.12 86.30 0.27 3.22 16 14 N -0.52 -14.72 3.62 -905.10 -3.27 -18.00 16 15 C 0.01 0.16 4.57 85.92 0.39 0.55 16 16 C 0.02 0.62 5.72 71.44 0.41 1.03 16 17 O -0.34 -9.31 10.04 -95.03 -0.95 -10.27 16 18 C 0.08 2.19 5.23 22.38 0.12 2.30 16 19 C -0.15 -3.69 10.01 22.39 0.22 -3.46 16 20 C -0.11 -2.38 10.03 22.27 0.22 -2.16 16 21 C -0.13 -3.02 10.05 22.32 0.22 -2.80 16 22 C -0.11 -2.67 9.55 22.25 0.21 -2.45 16 23 C -0.16 -4.26 3.53 -19.65 -0.07 -4.33 16 24 C 0.10 2.50 5.71 85.89 0.49 2.99 16 25 H 0.08 2.18 5.28 -2.39 -0.01 2.16 16 26 H 0.05 1.93 6.26 -2.39 -0.01 1.91 16 27 H 0.04 1.47 5.41 -2.39 -0.01 1.46 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 1.52 6.47 -2.39 -0.02 1.50 16 30 H 0.07 2.19 6.50 -2.39 -0.02 2.17 16 31 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 32 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 33 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.05 1.96 7.72 -2.39 -0.02 1.94 16 35 H 0.02 0.79 4.70 -2.39 -0.01 0.78 16 36 H 0.11 2.67 3.72 -2.39 -0.01 2.66 16 37 H 0.09 1.93 7.90 -2.39 -0.02 1.91 16 38 H 0.05 1.45 4.27 -2.39 -0.01 1.44 16 39 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 41 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 42 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 43 H 0.14 3.06 7.99 -2.91 -0.02 3.03 16 44 H 0.09 2.17 7.93 -2.39 -0.02 2.15 16 45 H 0.09 2.13 7.76 -2.39 -0.02 2.11 16 Total: -1.00 -65.35 330.41 3.38 -61.98 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.98 Total: 17.24 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 4.31 Total: -39.98 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -2.99 Total: -75.19 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.95 Total: -10.27 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -65.35 3.38 -61.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611262811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.579 kcal (2) G-P(sol) polarization free energy of solvation -65.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds