Wall clock time and date at job start Tue Mar 31 2020 06:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00437 * 2 1 4 4 C 1.53000 * 109.47303 * 184.72217 * 3 2 1 5 5 N 1.46894 * 109.47510 * 67.64108 * 4 3 2 6 6 C 1.46899 * 110.99855 * 286.90428 * 5 4 3 7 7 C 1.50700 * 109.47246 * 302.00272 * 6 5 4 8 8 H 1.08004 * 119.99371 * 5.00844 * 7 6 5 9 9 C 1.37872 * 120.00124 * 185.00625 * 7 6 5 10 10 N 1.31512 * 120.00331 * 5.09450 * 9 7 6 11 11 Si 1.86802 * 119.99765 * 185.10006 * 9 7 6 12 12 H 1.48503 * 109.47194 * 94.99550 * 11 9 7 13 13 H 1.48503 * 109.47161 * 214.99223 * 11 9 7 14 14 H 1.48497 * 109.47119 * 334.99242 * 11 9 7 15 15 C 1.46902 * 111.00254 * 162.94665 * 5 4 3 16 16 C 1.50699 * 109.46954 * 190.00152 * 15 5 4 17 17 C 1.50700 * 119.99755 * 276.24511 * 16 15 5 18 18 C 1.32557 * 120.00049 * 96.25229 * 16 15 5 19 19 C 1.47818 * 120.00309 * 351.61819 * 18 16 15 20 20 C 1.39532 * 120.13926 * 319.28463 * 19 18 16 21 21 C 1.37974 * 119.85819 * 179.71746 * 20 19 18 22 22 C 1.38355 * 120.13433 * 0.52891 * 21 20 19 23 23 C 1.38334 * 120.28797 * 359.76725 * 22 21 20 24 24 C 1.37974 * 120.14618 * 359.95365 * 23 22 21 25 25 H 1.08995 * 109.47292 * 184.94018 * 1 2 3 26 26 H 1.08998 * 109.47079 * 304.93899 * 1 2 3 27 27 H 1.09000 * 109.47297 * 64.93831 * 1 2 3 28 28 H 1.08998 * 109.47357 * 64.71328 * 3 2 1 29 29 H 1.09009 * 109.46705 * 304.71885 * 3 2 1 30 30 H 1.09005 * 109.46715 * 307.63516 * 4 3 2 31 31 H 1.08999 * 109.46886 * 187.64360 * 4 3 2 32 32 H 1.08998 * 109.47548 * 62.00543 * 6 5 4 33 33 H 1.09001 * 109.47253 * 182.00826 * 6 5 4 34 34 H 0.96995 * 120.00377 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.46640 * 70.00280 * 15 5 4 36 36 H 1.08999 * 109.46961 * 309.99857 * 15 5 4 37 37 H 1.09001 * 109.47030 * 90.00653 * 17 16 15 38 38 H 1.09007 * 109.47006 * 210.00476 * 17 16 15 39 39 H 1.09000 * 109.47671 * 330.00434 * 17 16 15 40 40 H 1.08002 * 120.00213 * 171.62354 * 18 16 15 41 41 H 1.07999 * 120.07416 * 359.97177 * 20 19 18 42 42 H 1.07997 * 119.93270 * 180.27659 * 21 20 19 43 43 H 1.07999 * 119.84970 * 179.74118 * 22 21 20 44 44 H 1.08003 * 119.92937 * 179.97438 * 23 22 21 45 45 H 1.07997 * 120.07401 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5310 1.1865 -0.1188 5 7 3.8793 0.6664 -1.4477 6 6 3.5576 -0.7629 -1.5545 7 6 4.2958 -1.5253 -0.4845 8 1 4.8752 -0.9931 0.2555 9 6 4.2316 -2.9021 -0.4503 10 7 3.6101 -3.5555 -1.4076 11 14 5.0273 -3.8395 0.9560 12 1 4.0109 -4.1197 2.0018 13 1 5.5798 -5.1206 0.4470 14 1 6.1236 -3.0237 1.5370 15 6 5.2948 0.9119 -1.7547 16 6 5.5570 0.5927 -3.2040 17 6 5.8338 -0.8278 -3.6245 18 6 5.5444 1.5613 -4.1088 19 6 5.0933 2.9179 -3.7331 20 6 3.9902 3.0823 -2.8946 21 6 3.5778 4.3511 -2.5429 22 6 4.2488 5.4592 -3.0287 23 6 5.3394 5.3031 -3.8653 24 6 5.7654 4.0397 -4.2199 25 1 -0.3633 -1.0238 0.0885 26 1 -0.3633 0.5885 0.8424 27 1 -0.3634 0.4353 -0.9309 28 1 1.7571 1.8159 0.9292 29 1 1.6233 1.8754 -0.8448 30 1 3.9031 0.5057 0.6469 31 1 3.9839 2.1686 0.0172 32 1 2.4844 -0.9044 -1.4265 33 1 3.8581 -1.1307 -2.5355 34 1 3.5652 -4.5241 -1.3837 35 1 5.9184 0.2779 -1.1244 36 1 5.5315 1.9587 -1.5647 37 1 4.8950 -1.3221 -3.8745 38 1 6.4878 -0.8276 -4.4966 39 1 6.3187 -1.3609 -2.8068 40 1 5.8636 1.3594 -5.1206 41 1 3.4629 2.2182 -2.5183 42 1 2.7269 4.4796 -1.8904 43 1 3.9194 6.4503 -2.7537 44 1 5.8587 6.1722 -4.2415 45 1 6.6172 3.9191 -4.8728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611268723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:52 Heat of formation + Delta-G solvation = 9.389126 kcal Electronic energy + Delta-G solvation = -24102.258904 eV Core-core repulsion = 20892.654660 eV Total energy + Delta-G solvation = -3209.604245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.17311 -37.79883 -36.53808 -34.20793 -32.33732 -30.71470 -30.49645 -29.03177 -27.28909 -25.96261 -25.71054 -24.28668 -22.52410 -22.02879 -21.43472 -19.91132 -17.75494 -16.78338 -16.00297 -15.84684 -15.61066 -15.04745 -14.85104 -14.41243 -14.18655 -14.12831 -13.87369 -13.40250 -13.08163 -12.86302 -12.41758 -12.29292 -12.17378 -11.73004 -11.67158 -11.53036 -11.22477 -11.03875 -10.83065 -10.74124 -10.65687 -10.63763 -10.47980 -10.11801 -9.86971 -9.79946 -9.39515 -9.10233 -8.89441 -8.53206 -8.20134 -7.64191 -7.11839 -5.90249 -3.92760 1.45605 1.79822 2.84901 3.33107 3.40372 3.42418 4.23330 4.47669 4.50901 5.06831 5.19244 5.21948 5.28538 5.42491 5.52472 5.59309 5.62136 5.74023 5.78018 5.83051 5.88489 5.92075 6.00831 6.07108 6.14030 6.23610 6.28302 6.32282 6.34334 6.48436 6.52793 6.57974 6.74198 6.75578 6.82255 6.95619 7.08663 7.17481 7.39924 7.43852 7.56696 7.75920 7.87294 8.12448 8.15415 8.37281 8.45933 9.14190 9.69374 11.15963 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.005698 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.244220 B = 4913.179098 C = 6065.123391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.072 3.928 4 C 0.050 3.950 5 N -0.528 5.528 6 C 0.168 3.832 7 C -0.527 4.527 8 H 0.050 0.950 9 C 0.068 3.932 10 N -0.891 5.891 11 Si 0.879 3.121 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.278 1.278 15 C 0.083 3.917 16 C -0.058 4.058 17 C -0.115 4.115 18 C -0.161 4.161 19 C -0.040 4.040 20 C -0.113 4.113 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.134 4.134 24 C -0.121 4.121 25 H 0.079 0.921 26 H 0.028 0.972 27 H 0.033 0.967 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.258 0.742 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.176 0.824 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.267 13.277 -2.584 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C -0.005 4.005 4 C -0.078 4.078 5 N -0.251 5.251 6 C 0.043 3.957 7 C -0.566 4.566 8 H 0.069 0.931 9 C -0.133 4.133 10 N -0.530 5.530 11 Si 0.707 3.293 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.045 4.045 16 C -0.059 4.059 17 C -0.171 4.171 18 C -0.180 4.180 19 C -0.040 4.040 20 C -0.131 4.131 21 C -0.148 4.148 22 C -0.151 4.151 23 C -0.153 4.153 24 C -0.140 4.140 25 H 0.097 0.903 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.192 0.808 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.484 13.164 -2.971 13.504 hybrid contribution 0.742 -0.748 1.436 1.781 sum 0.259 12.416 -1.535 12.513 Atomic orbital electron populations 1.22638 0.83353 1.02002 0.98638 1.88329 1.17501 1.26510 1.94735 1.22474 0.94517 0.85305 0.98249 1.22063 0.93277 0.99011 0.93486 1.62634 1.15875 1.21511 1.25094 1.20272 0.98441 0.79762 0.97178 1.21574 1.30093 0.91693 1.13249 0.93147 1.24803 0.95506 0.97631 0.95361 1.69932 1.43729 1.07507 1.31870 0.86808 0.79460 0.79623 0.83379 1.20939 1.21505 1.20290 1.21145 0.91537 0.99304 0.92487 1.22092 0.94023 0.94760 0.94977 1.20953 1.02337 0.93111 1.00701 1.21268 1.06437 0.91766 0.98549 1.19105 0.95307 0.92849 0.96747 1.22844 0.95897 0.99465 0.94892 1.21130 1.00072 0.92891 1.00708 1.21102 0.96756 0.98345 0.98922 1.20909 0.97817 0.96812 0.99720 1.21240 0.99762 0.92273 1.00677 0.90255 0.95387 0.94856 0.94571 0.93693 0.92032 0.91894 0.92551 0.93903 0.93237 0.93087 0.92050 0.89672 0.93505 0.91019 0.87121 0.80767 0.86791 0.87163 0.87016 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.35 -7.05 7.80 -35.23 -0.27 -7.33 16 3 C 0.07 1.22 6.22 37.16 0.23 1.45 16 4 C 0.05 0.92 5.09 -3.83 -0.02 0.90 16 5 N -0.53 -10.46 2.14 -237.52 -0.51 -10.97 16 6 C 0.17 4.06 4.42 -4.98 -0.02 4.03 16 7 C -0.53 -13.81 7.35 -34.44 -0.25 -14.07 16 8 H 0.05 1.34 5.95 -52.48 -0.31 1.03 16 9 C 0.07 1.87 5.45 -17.82 -0.10 1.78 16 10 N -0.89 -25.46 13.28 55.43 0.74 -24.72 16 11 Si 0.88 21.38 29.54 -169.99 -5.02 16.36 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 15 C 0.08 1.56 3.94 -4.98 -0.02 1.54 16 16 C -0.06 -1.04 5.07 -101.26 -0.51 -1.56 16 17 C -0.11 -2.11 8.86 36.01 0.32 -1.79 16 18 C -0.16 -2.63 9.38 -37.57 -0.35 -2.98 16 19 C -0.04 -0.63 4.96 -105.01 -0.52 -1.16 16 20 C -0.11 -1.81 7.69 -39.20 -0.30 -2.12 16 21 C -0.13 -1.82 10.03 -39.63 -0.40 -2.22 16 22 C -0.13 -1.71 10.04 -39.50 -0.40 -2.10 16 23 C -0.13 -1.72 10.03 -39.64 -0.40 -2.12 16 24 C -0.12 -1.70 9.79 -39.19 -0.38 -2.08 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.06 1.30 5.92 -51.93 -0.31 0.99 16 31 H 0.06 1.01 7.79 -51.93 -0.40 0.61 16 32 H 0.06 1.50 5.55 -51.93 -0.29 1.21 16 33 H 0.04 1.10 4.56 -51.93 -0.24 0.86 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.05 1.07 6.78 -51.93 -0.35 0.72 16 36 H 0.06 1.10 5.82 -51.93 -0.30 0.80 16 37 H 0.08 1.74 6.45 -51.93 -0.34 1.41 16 38 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 39 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 40 H 0.11 1.63 8.03 -52.49 -0.42 1.21 16 41 H 0.18 3.07 4.43 -52.49 -0.23 2.84 16 42 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 45 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -28.59 352.09 -8.74 -37.33 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.97 Total: 4.91 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -2.01 Total: -20.89 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.23 Total: -35.68 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.27 Total: -7.33 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.59 -8.74 -37.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611268723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.719 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds