Wall clock time and date at job start Tue Mar 31 2020 06:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00437 * 2 1 4 4 C 1.53000 * 109.47303 * 184.72217 * 3 2 1 5 5 N 1.46894 * 109.47510 * 67.64108 * 4 3 2 6 6 C 1.46899 * 110.99855 * 286.90428 * 5 4 3 7 7 C 1.50700 * 109.47246 * 302.00272 * 6 5 4 8 8 H 1.08004 * 119.99371 * 5.00844 * 7 6 5 9 9 C 1.37872 * 120.00124 * 185.00625 * 7 6 5 10 10 N 1.31512 * 120.00331 * 5.09450 * 9 7 6 11 11 Si 1.86802 * 119.99765 * 185.10006 * 9 7 6 12 12 H 1.48503 * 109.47194 * 94.99550 * 11 9 7 13 13 H 1.48503 * 109.47161 * 214.99223 * 11 9 7 14 14 H 1.48497 * 109.47119 * 334.99242 * 11 9 7 15 15 C 1.46902 * 111.00254 * 162.94665 * 5 4 3 16 16 C 1.50699 * 109.46954 * 190.00152 * 15 5 4 17 17 C 1.50700 * 119.99755 * 276.24511 * 16 15 5 18 18 C 1.32557 * 120.00049 * 96.25229 * 16 15 5 19 19 C 1.47818 * 120.00309 * 351.61819 * 18 16 15 20 20 C 1.39532 * 120.13926 * 319.28463 * 19 18 16 21 21 C 1.37974 * 119.85819 * 179.71746 * 20 19 18 22 22 C 1.38355 * 120.13433 * 0.52891 * 21 20 19 23 23 C 1.38334 * 120.28797 * 359.76725 * 22 21 20 24 24 C 1.37974 * 120.14618 * 359.95365 * 23 22 21 25 25 H 1.08995 * 109.47292 * 184.94018 * 1 2 3 26 26 H 1.08998 * 109.47079 * 304.93899 * 1 2 3 27 27 H 1.09000 * 109.47297 * 64.93831 * 1 2 3 28 28 H 1.08998 * 109.47357 * 64.71328 * 3 2 1 29 29 H 1.09009 * 109.46705 * 304.71885 * 3 2 1 30 30 H 1.09005 * 109.46715 * 307.63516 * 4 3 2 31 31 H 1.08999 * 109.46886 * 187.64360 * 4 3 2 32 32 H 1.08998 * 109.47548 * 62.00543 * 6 5 4 33 33 H 1.09001 * 109.47253 * 182.00826 * 6 5 4 34 34 H 0.96995 * 120.00377 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.46640 * 70.00280 * 15 5 4 36 36 H 1.08999 * 109.46961 * 309.99857 * 15 5 4 37 37 H 1.09001 * 109.47030 * 90.00653 * 17 16 15 38 38 H 1.09007 * 109.47006 * 210.00476 * 17 16 15 39 39 H 1.09000 * 109.47671 * 330.00434 * 17 16 15 40 40 H 1.08002 * 120.00213 * 171.62354 * 18 16 15 41 41 H 1.07999 * 120.07416 * 359.97177 * 20 19 18 42 42 H 1.07997 * 119.93270 * 180.27659 * 21 20 19 43 43 H 1.07999 * 119.84970 * 179.74118 * 22 21 20 44 44 H 1.08003 * 119.92937 * 179.97438 * 23 22 21 45 45 H 1.07997 * 120.07401 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5310 1.1865 -0.1188 5 7 3.8793 0.6664 -1.4477 6 6 3.5576 -0.7629 -1.5545 7 6 4.2958 -1.5253 -0.4845 8 1 4.8752 -0.9931 0.2555 9 6 4.2316 -2.9021 -0.4503 10 7 3.6101 -3.5555 -1.4076 11 14 5.0273 -3.8395 0.9560 12 1 4.0109 -4.1197 2.0018 13 1 5.5798 -5.1206 0.4470 14 1 6.1236 -3.0237 1.5370 15 6 5.2948 0.9119 -1.7547 16 6 5.5570 0.5927 -3.2040 17 6 5.8338 -0.8278 -3.6245 18 6 5.5444 1.5613 -4.1088 19 6 5.0933 2.9179 -3.7331 20 6 3.9902 3.0823 -2.8946 21 6 3.5778 4.3511 -2.5429 22 6 4.2488 5.4592 -3.0287 23 6 5.3394 5.3031 -3.8653 24 6 5.7654 4.0397 -4.2199 25 1 -0.3633 -1.0238 0.0885 26 1 -0.3633 0.5885 0.8424 27 1 -0.3634 0.4353 -0.9309 28 1 1.7571 1.8159 0.9292 29 1 1.6233 1.8754 -0.8448 30 1 3.9031 0.5057 0.6469 31 1 3.9839 2.1686 0.0172 32 1 2.4844 -0.9044 -1.4265 33 1 3.8581 -1.1307 -2.5355 34 1 3.5652 -4.5241 -1.3837 35 1 5.9184 0.2779 -1.1244 36 1 5.5315 1.9587 -1.5647 37 1 4.8950 -1.3221 -3.8745 38 1 6.4878 -0.8276 -4.4966 39 1 6.3187 -1.3609 -2.8068 40 1 5.8636 1.3594 -5.1206 41 1 3.4629 2.2182 -2.5183 42 1 2.7269 4.4796 -1.8904 43 1 3.9194 6.4503 -2.7537 44 1 5.8587 6.1722 -4.2415 45 1 6.6172 3.9191 -4.8728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611268723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:51 Heat of formation + Delta-G solvation = -4.585766 kcal Electronic energy + Delta-G solvation = -24102.864901 eV Core-core repulsion = 20892.654660 eV Total energy + Delta-G solvation = -3210.210241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42313 -39.17903 -37.95011 -35.67420 -34.34712 -31.92049 -31.59199 -30.49424 -29.09384 -27.34200 -27.02190 -26.04126 -24.13206 -23.11504 -22.57748 -21.57847 -19.13355 -18.51672 -17.35141 -17.30369 -17.07612 -16.64024 -16.05828 -15.98770 -15.61989 -15.59450 -15.20050 -14.68864 -14.44639 -14.29078 -13.97241 -13.79816 -13.41160 -13.16639 -13.12676 -12.96534 -12.84438 -12.66845 -12.56965 -12.34242 -12.24122 -12.03351 -11.78451 -11.69521 -11.45406 -11.39175 -11.29803 -10.51506 -10.36424 -10.06767 -9.60054 -8.94822 -8.78830 -7.98406 -6.08269 0.30879 0.73293 1.36521 1.39077 1.46277 1.57128 2.45975 3.13191 3.16432 3.29262 3.56980 3.96113 4.17589 4.26718 4.29257 4.31754 4.37880 4.51040 4.53880 4.57933 4.62601 4.70364 4.75887 4.82638 4.86199 4.88876 4.92485 4.92869 4.95104 5.05341 5.21117 5.23809 5.29073 5.47077 5.60248 5.62043 5.67107 5.79188 5.87901 5.94395 6.10823 6.16290 6.29924 6.38505 6.41715 6.55183 6.69586 7.09911 7.56395 9.04340 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.005698 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.244220 B = 4913.179098 C = 6065.123391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.397 6.397 3 C 0.073 3.927 4 C 0.050 3.950 5 N -0.516 5.516 6 C 0.185 3.815 7 C -0.521 4.521 8 H 0.043 0.957 9 C 0.020 3.980 10 N -0.922 5.922 11 Si 0.934 3.066 12 H -0.283 1.283 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.095 3.905 16 C -0.093 4.093 17 C -0.101 4.101 18 C -0.133 4.133 19 C -0.068 4.068 20 C -0.130 4.130 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.123 4.123 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.089 0.911 32 H 0.033 0.967 33 H 0.024 0.976 34 H 0.257 0.743 35 H 0.020 0.980 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.129 0.871 41 H 0.155 0.845 42 H 0.129 0.871 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.060 16.323 -2.711 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.316 6.316 3 C -0.003 4.003 4 C -0.078 4.078 5 N -0.239 5.239 6 C 0.059 3.941 7 C -0.560 4.560 8 H 0.061 0.939 9 C -0.179 4.179 10 N -0.564 5.564 11 Si 0.762 3.238 12 H -0.209 1.209 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.033 4.033 16 C -0.093 4.093 17 C -0.158 4.158 18 C -0.152 4.152 19 C -0.068 4.068 20 C -0.148 4.148 21 C -0.154 4.154 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.140 4.140 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.146 0.854 41 H 0.172 0.828 42 H 0.147 0.853 43 H 0.157 0.843 44 H 0.159 0.841 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.156 16.229 -3.088 16.521 hybrid contribution 0.619 -1.495 1.424 2.156 sum 0.463 14.734 -1.664 14.835 Atomic orbital electron populations 1.22754 0.81406 1.02324 1.00303 1.88251 1.19879 1.28433 1.95086 1.22547 0.93123 0.84586 1.00066 1.22146 0.94863 0.99310 0.91484 1.62626 1.16701 1.18532 1.26071 1.19878 0.96548 0.82155 0.95481 1.21780 1.29224 0.91888 1.13102 0.93899 1.25459 0.96382 0.98651 0.97366 1.70044 1.45354 1.07540 1.33430 0.85917 0.78645 0.78470 0.80785 1.20891 1.21196 1.19856 1.21032 0.90143 0.99212 0.92868 1.21943 0.97580 0.94867 0.94943 1.20747 1.01070 0.93214 1.00743 1.21513 1.03206 0.91755 0.98712 1.19179 0.96343 0.93016 0.98232 1.22696 0.96494 0.99819 0.95830 1.21334 1.00694 0.92473 1.00946 1.21482 0.96082 0.99248 0.97783 1.21302 0.97637 0.97291 0.98976 1.21476 0.99969 0.92176 1.00428 0.90920 0.92684 0.93875 0.91820 0.92577 0.95181 0.89261 0.94927 0.95770 0.93389 0.96126 0.90685 0.92561 0.90681 0.93797 0.85369 0.82780 0.85306 0.84284 0.84054 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.13 16 2 O -0.40 -16.06 7.80 -148.98 -1.16 -17.22 16 3 C 0.07 2.43 6.22 71.98 0.45 2.88 16 4 C 0.05 1.85 5.09 86.30 0.44 2.29 16 5 N -0.52 -21.02 2.14 -905.38 -1.94 -22.96 16 6 C 0.19 9.37 4.42 85.56 0.38 9.75 16 7 C -0.52 -28.43 7.35 25.60 0.19 -28.24 16 8 H 0.04 2.37 5.95 -2.91 -0.02 2.35 16 9 C 0.02 1.11 5.45 84.65 0.46 1.57 16 10 N -0.92 -54.72 13.28 21.44 0.28 -54.44 16 11 Si 0.93 45.07 29.54 68.60 2.03 47.09 16 12 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 14 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 15 C 0.09 3.68 3.94 85.56 0.34 4.01 16 16 C -0.09 -3.40 5.07 -17.60 -0.09 -3.49 16 17 C -0.10 -3.90 8.86 71.24 0.63 -3.26 16 18 C -0.13 -4.20 9.38 23.66 0.22 -3.98 16 19 C -0.07 -2.02 4.96 -20.12 -0.10 -2.12 16 20 C -0.13 -3.98 7.69 22.52 0.17 -3.81 16 21 C -0.14 -3.44 10.03 22.24 0.22 -3.22 16 22 C -0.13 -2.75 10.04 22.32 0.22 -2.53 16 23 C -0.13 -2.87 10.03 22.23 0.22 -2.64 16 24 C -0.12 -3.03 9.79 22.52 0.22 -2.81 16 25 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.03 1.30 5.92 -2.38 -0.01 1.28 16 31 H 0.09 2.77 7.79 -2.39 -0.02 2.75 16 32 H 0.03 1.83 5.55 -2.39 -0.01 1.82 16 33 H 0.02 1.32 4.56 -2.39 -0.01 1.31 16 34 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.02 0.91 6.78 -2.39 -0.02 0.89 16 36 H 0.07 2.67 5.82 -2.39 -0.01 2.66 16 37 H 0.06 2.46 6.45 -2.39 -0.02 2.44 16 38 H 0.07 2.35 8.05 -2.38 -0.02 2.33 16 39 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 40 H 0.13 3.53 8.03 -2.91 -0.02 3.50 16 41 H 0.16 5.36 4.43 -2.91 -0.01 5.35 16 42 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 43 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 44 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 45 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -63.91 352.09 5.41 -58.51 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.96 Total: 22.49 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 5.23 Total: -33.47 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -1.65 Total: -77.40 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -1.16 Total: -17.22 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -63.91 5.41 -58.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611268723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.920 kcal (2) G-P(sol) polarization free energy of solvation -63.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds