Wall clock time and date at job start Tue Mar 31 2020 06:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47247 * 2 1 4 4 C 1.53002 * 109.47538 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47483 * 180.02562 * 4 3 2 6 6 C 1.38362 * 119.85737 * 89.99387 * 5 4 3 7 7 C 1.37959 * 120.14727 * 179.97438 * 6 5 4 8 8 C 1.39573 * 119.85021 * 0.02882 * 7 6 5 9 9 C 1.47849 * 120.14192 * 179.97438 * 8 7 6 10 10 O 1.21555 * 119.99816 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00163 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00313 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47338 * 325.00481 * 12 11 9 14 14 C 1.50698 * 109.47572 * 205.00286 * 12 11 9 15 15 H 1.08007 * 119.99884 * 354.30621 * 14 12 11 16 16 C 1.37876 * 120.00513 * 174.30764 * 14 12 11 17 17 N 1.31509 * 120.00760 * 153.95370 * 16 14 12 18 18 Si 1.86803 * 119.99588 * 333.95194 * 16 14 12 19 19 H 1.48501 * 109.47184 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47436 * 299.99993 * 18 16 14 21 21 H 1.48504 * 109.47124 * 60.00159 * 18 16 14 22 22 C 1.53004 * 109.47062 * 85.00200 * 12 11 9 23 23 C 1.53002 * 109.46665 * 294.28295 * 22 12 11 24 24 C 1.39576 * 119.71414 * 0.25130 * 8 7 6 25 25 C 1.37957 * 119.84979 * 359.46497 * 24 8 7 26 26 H 1.08991 * 109.47544 * 300.00100 * 1 2 3 27 27 H 1.09003 * 109.46632 * 60.00593 * 1 2 3 28 28 H 1.09002 * 109.46807 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47818 * 239.99894 * 2 1 3 30 30 H 1.09003 * 109.47070 * 119.99714 * 2 1 3 31 31 H 1.09004 * 109.47225 * 59.99481 * 3 2 1 32 32 H 1.09002 * 109.47375 * 299.99812 * 3 2 1 33 33 H 1.08995 * 109.46910 * 59.99588 * 4 3 2 34 34 H 1.09003 * 109.46589 * 299.99558 * 4 3 2 35 35 H 1.08008 * 119.92355 * 359.97438 * 6 5 4 36 36 H 1.07995 * 120.07105 * 179.97438 * 7 6 5 37 37 H 0.97005 * 119.99618 * 0.02562 * 11 9 8 38 38 H 0.97007 * 119.99209 * 354.96251 * 17 16 14 39 39 H 1.08993 * 109.47035 * 54.27901 * 22 12 11 40 40 H 1.08994 * 109.47229 * 174.28239 * 22 12 11 41 41 H 1.09005 * 109.46581 * 180.02562 * 23 22 12 42 42 H 1.08998 * 109.47068 * 299.99087 * 23 22 12 43 43 H 1.08994 * 109.47343 * 60.00014 * 23 22 12 44 44 H 1.08002 * 120.07437 * 179.72906 * 24 8 7 45 45 H 1.08000 * 119.92452 * 180.27132 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 6 4.3013 3.5124 1.2015 7 6 4.7617 4.8129 1.2091 8 6 4.9959 5.4740 0.0024 9 6 5.4887 6.8679 0.0029 10 8 5.6904 7.4408 1.0559 11 7 5.7144 7.5034 -1.1639 12 6 6.2022 8.8847 -1.1634 13 1 5.7665 9.4236 -0.3220 14 6 5.8046 9.5584 -2.4514 15 1 5.3260 8.9881 -3.2338 16 6 6.0520 10.9029 -2.6312 17 7 6.1999 11.3879 -3.8446 18 14 6.1769 12.0356 -1.1511 19 1 6.4465 13.4219 -1.6100 20 1 4.8997 12.0038 -0.3942 21 1 7.2845 11.5814 -0.2723 22 6 7.7269 8.8871 -1.0361 23 6 8.1251 8.3331 0.3334 24 6 4.7573 4.8154 -1.2049 25 6 4.3025 3.5130 -1.1984 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8890 34 1 3.9329 0.9289 0.8909 35 1 4.1192 2.9998 2.1346 36 1 4.9396 5.3185 2.1466 37 1 5.5531 7.0463 -2.0042 38 1 6.2080 10.7897 -4.6083 39 1 8.1579 8.2638 -1.8194 40 1 8.0984 9.9068 -1.1375 41 1 9.2113 8.3352 0.4243 42 1 7.6942 8.9565 1.1168 43 1 7.7536 7.3134 0.4348 44 1 4.9323 5.3229 -2.1421 45 1 4.1217 3.0008 -2.1319 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613038740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:23 Heat of formation + Delta-G solvation = -63.986358 kcal Electronic energy + Delta-G solvation = -22460.674884 eV Core-core repulsion = 19247.888840 eV Total energy + Delta-G solvation = -3212.786044 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.28351 -39.74367 -37.11742 -36.53728 -34.56592 -33.72230 -32.77197 -31.84877 -29.84177 -28.86128 -25.70268 -24.36814 -23.57798 -23.19587 -21.99240 -21.69647 -21.10444 -19.99425 -18.54765 -17.43919 -16.62774 -16.40737 -16.28376 -15.92598 -15.56465 -15.42063 -14.92294 -14.76571 -14.53904 -14.47204 -14.37794 -14.08829 -13.74626 -13.67354 -13.50192 -13.31742 -12.68741 -12.60399 -12.50953 -12.30708 -12.25436 -12.00862 -11.85585 -11.77755 -11.64511 -11.57199 -11.36007 -11.25171 -10.84111 -10.42980 -9.96224 -9.92202 -9.61192 -8.83771 -6.42635 -0.12288 0.41137 1.45499 1.47673 1.69251 1.93428 2.40357 2.43833 2.88461 2.92025 3.67939 3.81567 3.91093 4.01785 4.13210 4.20075 4.28250 4.36408 4.37231 4.39823 4.44155 4.52258 4.62743 4.73279 4.82774 4.85461 4.93307 4.96594 5.04834 5.05919 5.08970 5.17824 5.19705 5.26623 5.33527 5.34734 5.39296 5.42624 5.51720 5.53514 5.63475 5.64582 5.69456 5.95575 6.00879 6.51995 6.80906 7.24063 7.38723 8.53306 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026720 B = 0.003066 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.659208 B = 9129.573984 C = 9570.497811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.113 4.113 4 C -0.078 4.078 5 C -0.055 4.055 6 C -0.125 4.125 7 C -0.072 4.072 8 C -0.156 4.156 9 C 0.541 3.459 10 O -0.581 6.581 11 N -0.698 5.698 12 C 0.254 3.746 13 H 0.021 0.979 14 C -0.628 4.628 15 H 0.042 0.958 16 C 0.009 3.991 17 N -0.913 5.913 18 Si 1.062 2.938 19 H -0.279 1.279 20 H -0.275 1.275 21 H -0.255 1.255 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.089 4.089 25 C -0.125 4.125 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.151 0.849 36 H 0.124 0.876 37 H 0.400 0.600 38 H 0.262 0.738 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.039 0.961 43 H 0.046 0.954 44 H 0.130 0.870 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.196 -24.139 7.595 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C -0.151 4.151 4 C -0.115 4.115 5 C -0.055 4.055 6 C -0.143 4.143 7 C -0.091 4.091 8 C -0.159 4.159 9 C 0.330 3.670 10 O -0.464 6.464 11 N -0.346 5.346 12 C 0.149 3.851 13 H 0.039 0.961 14 C -0.665 4.665 15 H 0.060 0.940 16 C -0.195 4.195 17 N -0.546 5.546 18 Si 0.884 3.116 19 H -0.204 1.204 20 H -0.201 1.201 21 H -0.180 1.180 22 C -0.166 4.166 23 C -0.191 4.191 24 C -0.108 4.108 25 C -0.142 4.142 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.169 0.831 36 H 0.142 0.858 37 H 0.236 0.764 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.148 0.852 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.856 -22.120 8.718 24.486 hybrid contribution -0.311 -1.135 -1.321 1.769 sum -6.166 -23.255 7.396 25.170 Atomic orbital electron populations 1.21801 0.96031 1.01887 1.01666 1.21524 0.95769 0.96009 1.02631 1.21587 0.93895 0.97480 1.02129 1.20720 0.95772 0.90589 1.04462 1.20426 0.95317 0.97279 0.92516 1.21259 1.00076 0.93611 0.99303 1.21318 0.95797 0.95068 0.96947 1.20012 1.06502 0.93397 0.95987 1.18821 0.77399 0.86972 0.83813 1.90684 1.54659 1.68783 1.32228 1.46059 1.65358 1.15220 1.07994 1.18762 0.90991 0.79359 0.95939 0.96134 1.22121 1.45675 0.97167 1.01532 0.93992 1.26651 0.91819 0.98298 1.02704 1.70964 1.44005 1.39674 0.99979 0.83784 0.78789 0.75355 0.73634 1.20394 1.20075 1.17977 1.22117 0.97537 1.00344 0.96635 1.21768 0.99989 1.00637 0.96665 1.21486 0.96976 0.95693 0.96649 1.21264 0.99934 0.93762 0.99280 0.92990 0.93071 0.92174 0.91403 0.91337 0.92303 0.92354 0.89484 0.89468 0.83085 0.85764 0.76391 0.92857 0.92823 0.92842 0.92400 0.94144 0.93545 0.85218 0.83077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.12 -1.17 5.93 30.59 0.18 -0.99 16 3 C -0.11 -1.35 5.20 30.59 0.16 -1.19 16 4 C -0.08 -0.92 5.34 29.85 0.16 -0.76 16 5 C -0.06 -0.99 5.14 -19.81 -0.10 -1.10 16 6 C -0.12 -2.56 9.68 22.23 0.22 -2.34 16 7 C -0.07 -2.02 9.60 22.53 0.22 -1.80 16 8 C -0.16 -4.98 5.87 -20.09 -0.12 -5.10 16 9 C 0.54 21.92 6.38 86.79 0.55 22.47 16 10 O -0.58 -26.85 13.48 -3.89 -0.05 -26.90 16 11 N -0.70 -29.40 4.98 -448.98 -2.24 -31.63 16 12 C 0.25 12.45 1.84 44.25 0.08 12.53 16 13 H 0.02 1.11 6.12 -2.39 -0.01 1.09 16 14 C -0.63 -34.62 8.92 25.60 0.23 -34.39 16 15 H 0.04 2.43 7.96 -2.91 -0.02 2.41 16 16 C 0.01 0.48 5.15 84.66 0.44 0.92 16 17 N -0.91 -54.84 13.70 21.45 0.29 -54.54 16 18 Si 1.06 50.97 26.56 68.60 1.82 52.79 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.26 -11.44 6.34 99.48 0.63 -10.81 16 22 C -0.13 -5.77 5.37 30.60 0.16 -5.61 16 23 C -0.13 -5.44 8.53 71.98 0.61 -4.82 16 24 C -0.09 -2.33 9.54 22.53 0.21 -2.11 16 25 C -0.12 -2.49 9.68 22.23 0.22 -2.28 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 0.84 8.08 -2.39 -0.02 0.82 16 34 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 35 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 36 H 0.12 3.63 7.65 -2.91 -0.02 3.61 16 37 H 0.40 15.13 6.56 -92.70 -0.61 14.52 16 38 H 0.26 15.70 8.73 -92.70 -0.81 14.89 16 39 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.05 2.51 5.77 -2.39 -0.01 2.50 16 41 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.04 1.72 7.89 -2.39 -0.02 1.70 16 43 H 0.05 1.91 5.63 -2.39 -0.01 1.89 16 44 H 0.13 3.20 6.41 -2.91 -0.02 3.18 16 45 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -66.75 359.61 4.00 -62.75 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.24 Total: 24.99 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 3.93 Total: -27.45 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -1.94 Total: -86.18 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 1.82 Total: 52.79 kcal Total: -66.75 4.00 -62.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.238 kcal (2) G-P(sol) polarization free energy of solvation -66.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds