Wall clock time and date at job start Tue Mar 31 2020 05:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.50494 * 2 1 4 4 O 1.42907 * 109.47197 * 59.99682 * 3 2 1 5 5 C 1.53125 * 109.50179 * 120.07858 * 2 1 3 6 6 C 1.53119 * 109.16017 * 62.28606 * 5 2 1 7 7 C 1.53038 * 109.27982 * 57.65101 * 6 5 2 8 8 N 1.46839 * 109.52495 * 300.82336 * 7 6 5 9 9 C 1.46908 * 111.00081 * 185.83770 * 8 7 6 10 10 C 1.50699 * 109.46768 * 293.95071 * 9 8 7 11 11 C 1.38635 * 119.75180 * 269.72307 * 10 9 8 12 12 C 1.37616 * 120.24586 * 179.72370 * 11 10 9 13 13 C 1.40709 * 119.74850 * 0.57257 * 12 11 10 14 14 C 1.41394 * 120.24713 * 179.68072 * 13 12 11 15 15 H 1.08004 * 120.00249 * 204.40611 * 14 13 12 16 16 C 1.39945 * 119.99951 * 24.40184 * 14 13 12 17 17 N 1.30827 * 119.99832 * 17.85983 * 16 14 13 18 18 Si 1.86804 * 120.00295 * 197.85704 * 16 14 13 19 19 H 1.48503 * 109.46694 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46895 * 119.99970 * 18 16 14 21 21 H 1.48498 * 109.47280 * 240.00226 * 18 16 14 22 22 C 1.40720 * 119.51247 * 359.70266 * 13 12 11 23 23 C 1.37617 * 119.74241 * 0.02562 * 22 13 12 24 24 C 1.46842 * 111.20186 * 61.73819 * 8 7 6 25 25 H 1.09003 * 109.47309 * 299.92257 * 1 2 3 26 26 H 1.09004 * 109.47085 * 59.92445 * 1 2 3 27 27 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47467 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47083 * 300.00347 * 3 2 1 30 30 H 0.96692 * 113.99941 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.52262 * 182.19031 * 5 2 1 32 32 H 1.08995 * 109.52097 * 302.38364 * 5 2 1 33 33 H 1.09000 * 109.50469 * 177.59497 * 6 5 2 34 34 H 1.09003 * 109.50284 * 297.71350 * 6 5 2 35 35 H 1.09007 * 109.45947 * 60.83618 * 7 6 5 36 36 H 1.08998 * 109.46493 * 180.81190 * 7 6 5 37 37 H 1.09003 * 109.47064 * 53.95213 * 9 8 7 38 38 H 1.09003 * 109.46843 * 173.95168 * 9 8 7 39 39 H 1.08004 * 119.87084 * 359.97438 * 11 10 9 40 40 H 1.08003 * 120.12294 * 180.28307 * 12 11 10 41 41 H 0.97001 * 120.00160 * 180.02562 * 17 16 14 42 42 H 1.07995 * 120.13003 * 180.02562 * 22 13 12 43 43 H 1.08001 * 119.87504 * 179.97438 * 23 22 13 44 44 H 1.09005 * 109.46878 * 178.23992 * 24 8 7 45 45 H 1.09006 * 109.46449 * 58.27698 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 8 1.5649 2.1161 1.1668 5 6 2.0412 -0.7234 1.2490 6 6 1.5749 -2.1814 1.2115 7 6 2.0845 -2.8420 -0.0714 8 7 1.5675 -2.1139 -1.2371 9 6 1.9223 -2.8005 -2.4865 10 6 3.4171 -2.7620 -2.6738 11 6 3.9970 -1.7088 -3.3639 12 6 5.3615 -1.6604 -3.5360 13 6 6.1674 -2.6915 -3.0189 14 6 7.5698 -2.6559 -3.1955 15 1 8.1408 -3.5724 -3.1701 16 6 8.2181 -1.4332 -3.4032 17 7 7.6167 -0.3132 -3.0941 18 14 9.9422 -1.4002 -4.1216 19 1 10.3958 -2.7898 -4.3835 20 1 9.9336 -0.6347 -5.3940 21 1 10.8673 -0.7501 -3.1590 22 6 5.5673 -3.7586 -2.3251 23 6 4.2013 -3.7834 -2.1600 24 6 2.0409 -0.7239 -1.2478 25 1 -0.3634 0.5126 0.8907 26 1 -0.3633 0.5150 -0.8893 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1308 1.4415 0.0005 29 1 1.6778 1.9562 -0.8899 30 1 1.8510 3.0373 1.2331 31 1 3.1305 -0.6898 1.2693 32 1 1.6442 -0.2368 2.1399 33 1 1.9715 -2.7127 2.0767 34 1 0.4856 -2.2157 1.2306 35 1 3.1743 -2.8197 -0.0833 36 1 1.7421 -3.8762 -0.1082 37 1 1.5886 -3.8371 -2.4388 38 1 1.4379 -2.3011 -3.3256 39 1 3.3759 -0.9212 -3.7645 40 1 5.8117 -0.8367 -4.0701 41 1 8.0659 0.5344 -3.2384 42 1 6.1763 -4.5549 -1.9236 43 1 3.7384 -4.6015 -1.6282 44 1 1.6670 -0.2196 -2.1389 45 1 3.1309 -0.7115 -1.2542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688022035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:48 Heat of formation + Delta-G solvation = -46.863195 kcal Electronic energy + Delta-G solvation = -23931.549198 eV Core-core repulsion = 20719.505669 eV Total energy + Delta-G solvation = -3212.043528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.69201 -37.71409 -36.39949 -34.37615 -33.13689 -31.68554 -29.82567 -29.33707 -26.87140 -26.67141 -25.57349 -24.37882 -22.43931 -21.17777 -20.75909 -19.73548 -18.08966 -17.33755 -17.23164 -15.65974 -15.32399 -14.90176 -14.65098 -14.49588 -14.23772 -13.93381 -13.61631 -13.53120 -13.05256 -12.73933 -12.46527 -12.39778 -12.14762 -11.95408 -11.76916 -11.54442 -11.23576 -11.05101 -11.03300 -10.82251 -10.77656 -10.62385 -10.37814 -10.29527 -9.98545 -9.95844 -9.76989 -9.70733 -9.43942 -9.16901 -7.74977 -7.49023 -7.33997 -6.81763 -4.40029 2.69187 3.01138 3.03873 3.08585 3.13630 3.88711 4.14890 4.53613 4.72214 4.94498 5.03638 5.18631 5.47978 5.52216 5.61406 5.64637 5.67965 5.78295 5.81005 5.87639 6.01284 6.03975 6.11354 6.20954 6.25443 6.28034 6.30970 6.35465 6.39615 6.41993 6.46973 6.52473 6.66385 6.77292 6.89943 7.02086 7.21785 7.30939 7.52844 7.57897 7.59605 7.69690 7.82081 8.00766 8.08540 8.25366 8.59405 8.84789 8.92717 10.12572 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.004603 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.528041 B = 6082.138538 C = 6902.681977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.055 4.055 3 C 0.084 3.916 4 O -0.570 6.570 5 C -0.104 4.104 6 C -0.117 4.117 7 C 0.053 3.947 8 N -0.527 5.527 9 C 0.114 3.886 10 C -0.249 4.249 11 C -0.089 4.089 12 C -0.167 4.167 13 C 0.113 3.887 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.077 3.923 17 N -0.793 5.793 18 Si 0.906 3.094 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.274 1.274 22 C -0.228 4.228 23 C -0.078 4.078 24 C 0.068 3.932 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.374 0.626 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.279 0.721 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.266 2.788 4.724 10.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.055 4.055 3 C 0.006 3.994 4 O -0.375 6.375 5 C -0.141 4.141 6 C -0.154 4.154 7 C -0.076 4.076 8 N -0.249 5.249 9 C -0.013 4.013 10 C -0.251 4.251 11 C -0.108 4.108 12 C -0.186 4.186 13 C 0.110 3.890 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.418 5.418 18 Si 0.730 3.270 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.200 1.200 22 C -0.248 4.248 23 C -0.097 4.097 24 C -0.061 4.061 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.220 0.780 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.034 2.454 4.880 11.424 hybrid contribution 2.162 0.707 -0.548 2.340 sum -7.872 3.161 4.332 9.525 Atomic orbital electron populations 1.21683 0.93817 1.02196 1.00555 1.20566 0.96811 0.92253 0.95880 1.22205 0.97434 0.92847 0.86886 1.86447 1.77516 1.28635 1.44897 1.21516 1.00238 0.95084 0.97282 1.21636 1.01201 0.95681 0.96926 1.22058 0.98685 0.96844 0.89965 1.62382 1.58232 1.01714 1.02606 1.20831 0.91878 0.97830 0.90732 1.19673 0.94833 0.99431 1.11212 1.20524 0.94974 0.96344 0.98956 1.21300 0.91822 1.01457 1.04033 1.17620 0.93250 0.90500 0.87636 1.19639 0.92555 0.93625 1.43396 0.90478 1.25905 1.00238 0.95110 0.92853 1.69834 1.38637 0.98920 1.34414 0.86296 0.81665 0.79628 0.79371 1.18375 1.19674 1.19979 1.20965 0.93873 1.02332 1.07638 1.20365 0.93851 0.96491 0.99022 1.21952 0.99013 0.89167 0.95943 0.93132 0.93733 0.91384 0.93492 0.93826 0.78018 0.92473 0.91657 0.92227 0.91455 0.93565 0.91721 0.91786 0.91751 0.89824 0.86605 0.90968 0.89241 0.89784 0.91639 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 7.89 37.16 0.29 -1.40 16 2 C -0.05 -0.79 0.60 -154.43 -0.09 -0.88 16 3 C 0.08 1.13 5.92 37.15 0.22 1.35 16 4 O -0.57 -7.00 12.37 -35.23 -0.44 -7.44 16 5 C -0.10 -1.51 4.61 -26.61 -0.12 -1.64 16 6 C -0.12 -1.62 5.74 -26.65 -0.15 -1.78 16 7 C 0.05 0.83 4.81 -3.84 -0.02 0.82 16 8 N -0.53 -8.53 4.14 -236.11 -0.98 -9.51 16 9 C 0.11 1.97 5.55 -4.97 -0.03 1.94 16 10 C -0.25 -5.16 4.05 -104.33 -0.42 -5.58 16 11 C -0.09 -1.99 7.99 -39.66 -0.32 -2.31 16 12 C -0.17 -4.24 8.70 -38.88 -0.34 -4.57 16 13 C 0.11 2.96 5.57 -106.83 -0.60 2.36 16 14 C -0.46 -12.20 9.05 -37.74 -0.34 -12.54 16 15 H 0.08 1.97 7.91 -52.48 -0.42 1.56 16 16 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 17 N -0.79 -20.20 10.95 55.55 0.61 -19.59 16 18 Si 0.91 18.49 29.60 -169.99 -5.03 13.46 16 19 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 23 C -0.08 -1.70 8.07 -39.66 -0.32 -2.02 16 24 C 0.07 1.11 3.26 -3.84 -0.01 1.09 16 25 H 0.05 0.68 7.69 -51.93 -0.40 0.28 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.94 6.01 -51.93 -0.31 0.63 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.37 2.93 9.12 45.56 0.42 3.34 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.93 7.77 -51.93 -0.40 0.53 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.90 6.58 -51.93 -0.34 0.56 16 35 H 0.05 0.86 6.55 -51.93 -0.34 0.52 16 36 H 0.06 0.97 8.06 -51.93 -0.42 0.55 16 37 H 0.06 1.05 8.00 -51.93 -0.42 0.63 16 38 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 39 H 0.08 1.72 8.03 -52.48 -0.42 1.30 16 40 H 0.12 3.06 6.16 -52.48 -0.32 2.74 16 41 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 42 H 0.09 2.08 8.06 -52.49 -0.42 1.65 16 43 H 0.08 1.64 8.03 -52.49 -0.42 1.22 16 44 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 45 H 0.05 1.02 6.47 -51.93 -0.34 0.68 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -27.22 344.78 -10.00 -37.23 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.64 Total: 9.92 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -2.72 Total: -29.26 kcal Atomic # 7 Polarization: -28.73 SS G_CDS: -0.37 Total: -29.10 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.44 Total: -7.44 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.22 -10.00 -37.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688022035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.637 kcal (2) G-P(sol) polarization free energy of solvation -27.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds