Wall clock time and date at job start Tue Mar 31 2020 05:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.50494 * 2 1 4 4 O 1.42907 * 109.47197 * 59.99682 * 3 2 1 5 5 C 1.53125 * 109.50179 * 120.07858 * 2 1 3 6 6 C 1.53119 * 109.16017 * 62.28606 * 5 2 1 7 7 C 1.53038 * 109.27982 * 57.65101 * 6 5 2 8 8 N 1.46839 * 109.52495 * 300.82336 * 7 6 5 9 9 C 1.46908 * 111.00081 * 185.83770 * 8 7 6 10 10 C 1.50699 * 109.46768 * 293.95071 * 9 8 7 11 11 C 1.38635 * 119.75180 * 269.72307 * 10 9 8 12 12 C 1.37616 * 120.24586 * 179.72370 * 11 10 9 13 13 C 1.40709 * 119.74850 * 0.57257 * 12 11 10 14 14 C 1.41394 * 120.24713 * 179.68072 * 13 12 11 15 15 H 1.08004 * 120.00249 * 204.40611 * 14 13 12 16 16 C 1.39945 * 119.99951 * 24.40184 * 14 13 12 17 17 N 1.30827 * 119.99832 * 17.85983 * 16 14 13 18 18 Si 1.86804 * 120.00295 * 197.85704 * 16 14 13 19 19 H 1.48503 * 109.46694 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46895 * 119.99970 * 18 16 14 21 21 H 1.48498 * 109.47280 * 240.00226 * 18 16 14 22 22 C 1.40720 * 119.51247 * 359.70266 * 13 12 11 23 23 C 1.37617 * 119.74241 * 0.02562 * 22 13 12 24 24 C 1.46842 * 111.20186 * 61.73819 * 8 7 6 25 25 H 1.09003 * 109.47309 * 299.92257 * 1 2 3 26 26 H 1.09004 * 109.47085 * 59.92445 * 1 2 3 27 27 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47467 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47083 * 300.00347 * 3 2 1 30 30 H 0.96692 * 113.99941 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.52262 * 182.19031 * 5 2 1 32 32 H 1.08995 * 109.52097 * 302.38364 * 5 2 1 33 33 H 1.09000 * 109.50469 * 177.59497 * 6 5 2 34 34 H 1.09003 * 109.50284 * 297.71350 * 6 5 2 35 35 H 1.09007 * 109.45947 * 60.83618 * 7 6 5 36 36 H 1.08998 * 109.46493 * 180.81190 * 7 6 5 37 37 H 1.09003 * 109.47064 * 53.95213 * 9 8 7 38 38 H 1.09003 * 109.46843 * 173.95168 * 9 8 7 39 39 H 1.08004 * 119.87084 * 359.97438 * 11 10 9 40 40 H 1.08003 * 120.12294 * 180.28307 * 12 11 10 41 41 H 0.97001 * 120.00160 * 180.02562 * 17 16 14 42 42 H 1.07995 * 120.13003 * 180.02562 * 22 13 12 43 43 H 1.08001 * 119.87504 * 179.97438 * 23 22 13 44 44 H 1.09005 * 109.46878 * 178.23992 * 24 8 7 45 45 H 1.09006 * 109.46449 * 58.27698 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 8 1.5649 2.1161 1.1668 5 6 2.0412 -0.7234 1.2490 6 6 1.5749 -2.1814 1.2115 7 6 2.0845 -2.8420 -0.0714 8 7 1.5675 -2.1139 -1.2371 9 6 1.9223 -2.8005 -2.4865 10 6 3.4171 -2.7620 -2.6738 11 6 3.9970 -1.7088 -3.3639 12 6 5.3615 -1.6604 -3.5360 13 6 6.1674 -2.6915 -3.0189 14 6 7.5698 -2.6559 -3.1955 15 1 8.1408 -3.5724 -3.1701 16 6 8.2181 -1.4332 -3.4032 17 7 7.6167 -0.3132 -3.0941 18 14 9.9422 -1.4002 -4.1216 19 1 10.3958 -2.7898 -4.3835 20 1 9.9336 -0.6347 -5.3940 21 1 10.8673 -0.7501 -3.1590 22 6 5.5673 -3.7586 -2.3251 23 6 4.2013 -3.7834 -2.1600 24 6 2.0409 -0.7239 -1.2478 25 1 -0.3634 0.5126 0.8907 26 1 -0.3633 0.5150 -0.8893 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1308 1.4415 0.0005 29 1 1.6778 1.9562 -0.8899 30 1 1.8510 3.0373 1.2331 31 1 3.1305 -0.6898 1.2693 32 1 1.6442 -0.2368 2.1399 33 1 1.9715 -2.7127 2.0767 34 1 0.4856 -2.2157 1.2306 35 1 3.1743 -2.8197 -0.0833 36 1 1.7421 -3.8762 -0.1082 37 1 1.5886 -3.8371 -2.4388 38 1 1.4379 -2.3011 -3.3256 39 1 3.3759 -0.9212 -3.7645 40 1 5.8117 -0.8367 -4.0701 41 1 8.0659 0.5344 -3.2384 42 1 6.1763 -4.5549 -1.9236 43 1 3.7384 -4.6015 -1.6282 44 1 1.6670 -0.2196 -2.1389 45 1 3.1309 -0.7115 -1.2542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688022035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:47 Heat of formation + Delta-G solvation = -62.913215 kcal Electronic energy + Delta-G solvation = -23932.245179 eV Core-core repulsion = 20719.505669 eV Total energy + Delta-G solvation = -3212.739509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.00987 -39.33922 -37.62092 -35.93919 -34.69506 -32.93240 -31.54781 -31.17370 -28.44644 -27.85383 -26.73839 -26.02127 -23.84104 -22.83160 -22.32676 -21.34669 -19.37225 -19.18177 -18.25020 -17.23093 -16.88154 -16.16804 -16.08463 -15.80553 -15.74671 -15.34229 -15.17384 -15.04762 -14.42514 -14.27392 -13.86081 -13.81965 -13.52652 -13.41069 -13.24279 -13.04811 -12.80298 -12.75235 -12.38705 -12.28438 -12.20124 -12.04901 -11.87891 -11.60023 -11.43032 -11.27594 -11.16862 -11.09721 -11.00993 -10.80929 -9.36687 -9.27156 -9.10756 -8.67074 -6.36189 0.92148 1.12495 1.34615 1.46433 1.49852 2.17602 2.66431 3.02023 3.53374 3.70691 3.81488 3.88443 4.02537 4.23813 4.34819 4.37687 4.42726 4.49649 4.50455 4.55769 4.62782 4.64813 4.69837 4.84016 4.91536 4.97663 5.00259 5.05212 5.08858 5.11775 5.13873 5.18353 5.29632 5.32965 5.36315 5.44870 5.47364 5.65284 5.68044 5.94473 6.07676 6.11574 6.23079 6.33863 6.37694 6.68627 6.90182 6.91982 7.01814 8.29726 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.004603 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.528041 B = 6082.138538 C = 6902.681977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.055 4.055 3 C 0.088 3.912 4 O -0.578 6.578 5 C -0.101 4.101 6 C -0.111 4.111 7 C 0.053 3.947 8 N -0.514 5.514 9 C 0.116 3.884 10 C -0.231 4.231 11 C -0.088 4.088 12 C -0.191 4.191 13 C 0.080 3.920 14 C -0.504 4.504 15 H 0.071 0.929 16 C 0.037 3.963 17 N -0.825 5.825 18 Si 0.980 3.020 19 H -0.259 1.259 20 H -0.263 1.263 21 H -0.265 1.265 22 C -0.247 4.247 23 C -0.077 4.077 24 C 0.073 3.927 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.055 0.945 30 H 0.394 0.606 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.013 0.987 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.287 0.713 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.070 0.930 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.132 2.786 5.130 12.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.055 4.055 3 C 0.010 3.990 4 O -0.385 6.385 5 C -0.139 4.139 6 C -0.148 4.148 7 C -0.076 4.076 8 N -0.236 5.236 9 C -0.011 4.011 10 C -0.234 4.234 11 C -0.107 4.107 12 C -0.211 4.211 13 C 0.078 3.922 14 C -0.533 4.533 15 H 0.089 0.911 16 C -0.178 4.178 17 N -0.451 5.451 18 Si 0.800 3.200 19 H -0.183 1.183 20 H -0.187 1.187 21 H -0.190 1.190 22 C -0.267 4.267 23 C -0.096 4.096 24 C -0.055 4.055 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.243 0.757 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.032 0.968 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.130 0.870 44 H 0.088 0.912 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -11.916 2.463 5.300 13.272 hybrid contribution 2.598 0.715 -0.594 2.760 sum -9.317 3.178 4.705 10.911 Atomic orbital electron populations 1.21588 0.92387 1.02282 1.01004 1.20555 0.97753 0.92613 0.94594 1.22070 0.96404 0.92711 0.87829 1.86390 1.77491 1.30330 1.44296 1.21486 0.98728 0.95963 0.97731 1.21614 1.01989 0.94902 0.96311 1.22112 0.96715 0.98005 0.90731 1.62445 1.57347 1.01508 1.02292 1.20929 0.88951 0.99439 0.91789 1.20110 0.97077 0.97740 1.08446 1.20739 0.94051 0.97246 0.98696 1.21252 0.93177 1.01297 1.05325 1.17947 0.93868 0.91643 0.88754 1.19855 0.93111 0.94290 1.46080 0.91063 1.26724 1.04342 0.94225 0.92515 1.69884 1.40547 0.99591 1.35111 0.85198 0.76401 0.79593 0.78759 1.18297 1.18740 1.19002 1.21157 0.95317 1.02165 1.08070 1.20661 0.92960 0.97448 0.98504 1.21889 0.96569 0.89691 0.97360 0.92796 0.93163 0.91403 0.95217 0.92707 0.75717 0.94886 0.91006 0.90958 0.89969 0.96832 0.90129 0.89866 0.90466 0.88087 0.88506 0.90229 0.89162 0.87049 0.91182 0.96898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 7.89 71.98 0.57 -2.21 16 2 C -0.05 -1.49 0.60 -52.13 -0.03 -1.52 16 3 C 0.09 2.27 5.92 71.98 0.43 2.69 16 4 O -0.58 -13.12 12.37 -148.98 -1.84 -14.96 16 5 C -0.10 -2.84 4.61 30.68 0.14 -2.70 16 6 C -0.11 -2.82 5.74 30.65 0.18 -2.64 16 7 C 0.05 1.56 4.81 86.33 0.42 1.97 16 8 N -0.51 -15.45 4.14 -900.91 -3.73 -19.18 16 9 C 0.12 3.70 5.55 85.56 0.47 4.17 16 10 C -0.23 -9.38 4.05 -19.67 -0.08 -9.46 16 11 C -0.09 -4.00 7.99 22.22 0.18 -3.82 16 12 C -0.19 -10.11 8.70 22.73 0.20 -9.91 16 13 C 0.08 4.41 5.57 -21.29 -0.12 4.29 16 14 C -0.50 -27.86 9.05 23.46 0.21 -27.65 16 15 H 0.07 3.84 7.91 -2.91 -0.02 3.82 16 16 C 0.04 1.88 5.14 85.26 0.44 2.32 16 17 N -0.83 -43.72 10.95 21.83 0.24 -43.48 16 18 Si 0.98 38.80 29.60 68.60 2.03 40.84 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 21 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 22 C -0.25 -12.36 9.80 22.73 0.22 -12.14 16 23 C -0.08 -3.31 8.07 22.22 0.18 -3.13 16 24 C 0.07 2.32 3.26 86.33 0.28 2.60 16 25 H 0.05 1.28 7.69 -2.39 -0.02 1.26 16 26 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.07 1.64 6.01 -2.39 -0.01 1.62 16 28 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.39 5.41 9.12 -74.06 -0.68 4.74 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.92 7.77 -2.39 -0.02 1.90 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.90 6.58 -2.39 -0.02 1.88 16 35 H 0.01 0.49 6.55 -2.38 -0.02 0.48 16 36 H 0.08 2.15 8.06 -2.39 -0.02 2.13 16 37 H 0.08 2.40 8.00 -2.39 -0.02 2.38 16 38 H 0.08 2.32 8.08 -2.39 -0.02 2.30 16 39 H 0.10 4.13 8.03 -2.91 -0.02 4.11 16 40 H 0.10 5.41 6.16 -2.91 -0.02 5.39 16 41 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 42 H 0.09 4.35 8.06 -2.91 -0.02 4.32 16 43 H 0.11 4.13 8.03 -2.91 -0.02 4.11 16 44 H 0.07 2.14 8.12 -2.38 -0.02 2.12 16 45 H 0.01 0.51 6.47 -2.38 -0.02 0.49 16 Total: -1.00 -60.67 344.78 0.67 -60.00 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: 0.29 Total: 33.92 kcal Atomic # 6 Polarization: -60.82 SS G_CDS: 3.68 Total: -57.14 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -3.49 Total: -62.66 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.84 Total: -14.96 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.84 kcal Total: -60.67 0.67 -60.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688022035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.911 kcal (2) G-P(sol) polarization free energy of solvation -60.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds