Wall clock time and date at job start Tue Mar 31 2020 06:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 C 1.53000 * 109.47247 * 120.00185 * 2 1 3 5 5 C 1.53000 * 109.47032 * 173.36736 * 4 2 1 6 6 N 1.46899 * 115.54899 * 65.96322 * 5 4 2 7 7 C 1.46901 * 111.00132 * 57.10109 * 6 5 4 8 8 C 1.50697 * 109.47442 * 179.56947 * 7 6 5 9 9 C 1.38300 * 119.93014 * 270.30188 * 8 7 6 10 10 C 1.38100 * 120.06722 * 180.30171 * 9 8 7 11 11 C 1.38884 * 119.92760 * 359.41724 * 10 9 8 12 12 O 1.35757 * 120.06759 * 180.30388 * 11 10 9 13 13 C 1.34831 * 116.99647 * 354.35815 * 12 11 10 14 14 H 1.07994 * 120.00511 * 5.10797 * 13 12 11 15 15 C 1.38656 * 119.99819 * 185.10991 * 13 12 11 16 16 N 1.31556 * 120.00160 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99758 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.47270 * 90.00355 * 17 15 13 19 19 H 1.48500 * 109.47115 * 209.99716 * 17 15 13 20 20 H 1.48491 * 109.47448 * 330.00228 * 17 15 13 21 21 C 1.38873 * 119.86364 * 0.28014 * 11 10 9 22 22 C 1.38095 * 119.93404 * 359.97438 * 21 11 10 23 23 C 1.52998 * 117.49994 * 211.63405 * 5 4 2 24 24 C 1.53000 * 117.49944 * 280.29438 * 5 4 2 25 25 H 1.09000 * 109.46979 * 299.99854 * 1 2 3 26 26 H 1.08993 * 109.47434 * 59.99904 * 1 2 3 27 27 H 1.09004 * 109.47059 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46501 * 240.00191 * 2 1 3 29 29 H 1.09001 * 109.46853 * 187.53616 * 3 2 1 30 30 H 1.09005 * 109.46882 * 307.53549 * 3 2 1 31 31 H 1.08999 * 109.47010 * 67.53315 * 3 2 1 32 32 H 1.09002 * 109.46925 * 53.36814 * 4 2 1 33 33 H 1.08993 * 109.47114 * 293.36751 * 4 2 1 34 34 H 1.00898 * 111.00157 * 181.05068 * 6 5 4 35 35 H 1.08996 * 109.47094 * 59.56806 * 7 6 5 36 36 H 1.09000 * 109.46977 * 299.56867 * 7 6 5 37 37 H 1.07994 * 119.97142 * 359.97438 * 9 8 7 38 38 H 1.07998 * 120.03919 * 179.69637 * 10 9 8 39 39 H 0.96999 * 119.99700 * 180.02562 * 16 15 13 40 40 H 1.08010 * 120.03600 * 180.02562 * 21 11 10 41 41 H 1.07999 * 119.96923 * 179.97438 * 22 21 11 42 42 H 1.09005 * 117.50133 * 215.00653 * 23 5 4 43 43 H 1.09006 * 117.49797 * 0.02562 * 23 5 4 44 44 H 1.08998 * 117.50058 * 359.97438 * 24 5 4 45 45 H 1.09002 * 117.50114 * 144.97453 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5609 -0.8672 1.1686 6 7 4.3214 0.3887 1.2185 7 6 4.0109 1.1440 2.4396 8 6 4.8156 2.4179 2.4607 9 6 6.0709 2.4316 3.0411 10 6 6.8083 3.5990 3.0675 11 6 6.2931 4.7570 2.4997 12 8 7.0181 5.9046 2.5186 13 6 8.1783 5.8843 3.2051 14 1 8.5334 4.9610 3.6384 15 6 8.9157 7.0489 3.3549 16 7 10.0476 7.0293 4.0251 17 14 8.3020 8.6458 2.6048 18 1 7.4449 9.3570 3.5872 19 1 9.4611 9.5027 2.2478 20 1 7.5120 8.3476 1.3833 21 6 5.0349 4.7384 1.9121 22 6 4.3002 3.5693 1.8935 23 6 4.1882 -2.0993 1.8238 24 6 4.1173 -1.9957 0.2982 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1217 1.4454 -0.1348 30 1 1.5708 1.9938 -0.8150 31 1 1.7909 1.9159 0.9497 32 1 1.5830 -1.7090 1.3105 33 1 1.7769 -0.1436 2.1352 34 1 5.3124 0.2146 1.1433 35 1 4.2611 0.5417 3.3129 36 1 2.9481 1.3854 2.4571 37 1 6.4728 1.5298 3.4788 38 1 7.7864 3.6103 3.5252 39 1 10.5632 7.8441 4.1301 40 1 4.6317 5.6373 1.4694 41 1 3.3215 3.5543 1.4371 42 1 5.1651 -1.9781 2.2919 43 1 3.5172 -2.8063 2.3118 44 1 3.3998 -2.6346 -0.2167 45 1 5.0474 -1.8063 -0.2377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701479926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:25 Heat of formation + Delta-G solvation = 10.883075 kcal Electronic energy + Delta-G solvation = -22796.003476 eV Core-core repulsion = 19586.464014 eV Total energy + Delta-G solvation = -3209.539462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.57505 -38.94614 -36.82884 -35.21408 -33.41076 -32.32336 -30.25874 -29.16999 -27.52941 -26.97686 -25.63346 -24.02274 -22.59456 -22.07148 -20.70999 -20.34732 -19.05629 -17.88643 -17.31004 -16.36564 -15.84089 -14.96865 -14.74943 -14.55765 -14.14419 -13.98431 -13.93281 -13.67199 -13.49827 -13.19760 -12.88583 -12.65455 -12.42207 -12.23581 -12.15582 -12.10284 -11.76041 -11.61450 -11.32529 -11.29115 -10.95844 -10.81421 -10.74262 -10.65593 -10.49506 -10.32108 -10.17245 -9.99884 -9.38769 -8.87701 -8.26371 -8.15427 -7.31403 -6.42521 -4.09158 2.13705 2.17829 3.21669 3.25420 3.40308 3.59921 4.09900 4.23270 4.48769 4.57483 4.65649 4.71497 4.86804 5.00260 5.03669 5.10115 5.17313 5.30830 5.41020 5.47376 5.56108 5.56366 5.62055 5.68096 5.71447 5.75172 5.79898 5.81751 5.89695 5.95165 5.98202 6.05936 6.13185 6.21111 6.34692 6.40722 6.58993 6.75795 6.79188 6.98426 7.11186 7.25424 7.28574 7.42910 7.61785 7.79471 8.03343 8.92920 9.55633 10.65184 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.003190 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.402664 B = 8775.665271 C = 9499.170751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.156 4.156 4 C -0.070 4.070 5 C 0.063 3.937 6 N -0.639 5.639 7 C 0.115 3.885 8 C -0.176 4.176 9 C -0.067 4.067 10 C -0.222 4.222 11 C 0.162 3.838 12 O -0.218 6.218 13 C -0.390 4.390 14 H 0.106 0.894 15 C 0.063 3.937 16 N -0.880 5.880 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.259 1.259 21 C -0.194 4.194 22 C -0.054 4.054 23 C -0.222 4.222 24 C -0.170 4.170 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.342 0.658 35 H 0.029 0.971 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.131 0.869 39 H 0.279 0.721 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.303 -15.634 -5.861 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 C -0.213 4.213 4 C -0.108 4.108 5 C -0.030 4.030 6 N -0.268 5.268 7 C -0.013 4.013 8 C -0.177 4.177 9 C -0.086 4.086 10 C -0.241 4.241 11 C 0.110 3.890 12 O -0.123 6.123 13 C -0.465 4.465 14 H 0.123 0.877 15 C -0.140 4.140 16 N -0.518 5.518 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.183 1.183 21 C -0.214 4.214 22 C -0.073 4.073 23 C -0.262 4.262 24 C -0.208 4.208 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.149 0.851 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.114 0.886 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.588 -14.900 -6.262 22.454 hybrid contribution 0.609 0.013 0.545 0.818 sum -14.979 -14.886 -5.717 21.878 Atomic orbital electron populations 1.21897 0.96103 1.01028 1.01654 1.20946 0.94270 0.97564 0.97483 1.22164 1.04745 0.94135 1.00266 1.21152 0.90543 1.00324 0.98799 1.21676 0.93876 0.84599 1.02831 1.60476 1.11210 1.16763 1.38387 1.20692 0.99423 0.91559 0.89595 1.19190 0.96535 0.94705 1.07298 1.20647 0.93541 0.96807 0.97619 1.21232 1.02455 0.92837 1.07562 1.19148 0.90405 0.86310 0.93179 1.83577 1.32923 1.30801 1.64958 1.20765 0.95192 0.98861 1.31693 0.87668 1.24469 0.94848 0.98731 0.95951 1.69646 1.13257 1.29799 1.39115 0.86180 0.78509 0.81586 0.80629 1.19880 1.20790 1.18324 1.20228 0.93947 0.99003 1.08175 1.20498 0.98438 0.91452 0.96909 1.23668 1.03009 1.03824 0.95718 1.23096 1.03096 1.01410 0.93206 0.92909 0.92843 0.93317 0.91590 0.88407 0.94366 0.93473 0.91873 0.91401 0.83863 0.95245 0.90448 0.87739 0.85090 0.91049 0.86610 0.86770 0.89114 0.89065 0.88649 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.19 37.16 0.34 -0.87 16 2 C -0.08 -0.78 2.90 -90.62 -0.26 -1.04 16 3 C -0.16 -1.67 7.66 37.16 0.28 -1.39 16 4 C -0.07 -0.64 4.37 -26.73 -0.12 -0.75 16 5 C 0.06 0.61 1.78 -131.60 -0.23 0.37 16 6 N -0.64 -7.25 4.10 -101.22 -0.42 -7.67 16 7 C 0.11 1.43 4.94 -4.98 -0.02 1.41 16 8 C -0.18 -2.77 5.39 -104.57 -0.56 -3.34 16 9 C -0.07 -1.18 9.69 -39.61 -0.38 -1.56 16 10 C -0.22 -4.71 9.17 -39.39 -0.36 -5.07 16 11 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 12 O -0.22 -5.74 8.59 0.02 0.00 -5.74 16 13 C -0.39 -10.97 9.95 30.89 0.31 -10.66 16 14 H 0.11 3.02 5.44 -52.49 -0.29 2.74 16 15 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 16 N -0.88 -25.45 13.96 55.48 0.77 -24.67 16 17 Si 0.91 21.69 28.62 -169.99 -4.86 16.82 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 21 C -0.19 -3.81 9.99 -39.40 -0.39 -4.20 16 22 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 23 C -0.22 -2.02 10.05 -26.69 -0.27 -2.29 16 24 C -0.17 -1.51 10.07 -26.69 -0.27 -1.78 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 1.21 5.84 -51.93 -0.30 0.90 16 30 H 0.04 0.40 8.13 -51.93 -0.42 -0.03 16 31 H 0.05 0.51 6.42 -51.93 -0.33 0.18 16 32 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.07 0.65 6.66 -51.93 -0.35 0.30 16 34 H 0.34 4.03 8.60 -39.29 -0.34 3.69 16 35 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 36 H 0.08 0.93 4.92 -51.93 -0.26 0.68 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.13 2.95 5.64 -52.49 -0.30 2.65 16 39 H 0.28 7.45 8.31 -40.82 -0.34 7.12 16 40 H 0.12 2.14 8.06 -52.48 -0.42 1.71 16 41 H 0.11 1.62 7.52 -52.49 -0.39 1.23 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -28.12 358.48 -8.96 -37.08 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.18 Total: 6.10 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -2.69 Total: -27.33 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.36 Total: -32.34 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: 0.00 Total: -5.74 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.86 Total: 16.82 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.12 -8.96 -37.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701479926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.966 kcal (2) G-P(sol) polarization free energy of solvation -28.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds