Wall clock time and date at job start Tue Mar 31 2020 06:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 C 1.53000 * 109.47247 * 120.00185 * 2 1 3 5 5 C 1.53000 * 109.47032 * 173.36736 * 4 2 1 6 6 N 1.46899 * 115.54899 * 65.96322 * 5 4 2 7 7 C 1.46901 * 111.00132 * 57.10109 * 6 5 4 8 8 C 1.50697 * 109.47442 * 179.56947 * 7 6 5 9 9 C 1.38300 * 119.93014 * 270.30188 * 8 7 6 10 10 C 1.38100 * 120.06722 * 180.30171 * 9 8 7 11 11 C 1.38884 * 119.92760 * 359.41724 * 10 9 8 12 12 O 1.35757 * 120.06759 * 180.30388 * 11 10 9 13 13 C 1.34831 * 116.99647 * 354.35815 * 12 11 10 14 14 H 1.07994 * 120.00511 * 5.10797 * 13 12 11 15 15 C 1.38656 * 119.99819 * 185.10991 * 13 12 11 16 16 N 1.31556 * 120.00160 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99758 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.47270 * 90.00355 * 17 15 13 19 19 H 1.48500 * 109.47115 * 209.99716 * 17 15 13 20 20 H 1.48491 * 109.47448 * 330.00228 * 17 15 13 21 21 C 1.38873 * 119.86364 * 0.28014 * 11 10 9 22 22 C 1.38095 * 119.93404 * 359.97438 * 21 11 10 23 23 C 1.52998 * 117.49994 * 211.63405 * 5 4 2 24 24 C 1.53000 * 117.49944 * 280.29438 * 5 4 2 25 25 H 1.09000 * 109.46979 * 299.99854 * 1 2 3 26 26 H 1.08993 * 109.47434 * 59.99904 * 1 2 3 27 27 H 1.09004 * 109.47059 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46501 * 240.00191 * 2 1 3 29 29 H 1.09001 * 109.46853 * 187.53616 * 3 2 1 30 30 H 1.09005 * 109.46882 * 307.53549 * 3 2 1 31 31 H 1.08999 * 109.47010 * 67.53315 * 3 2 1 32 32 H 1.09002 * 109.46925 * 53.36814 * 4 2 1 33 33 H 1.08993 * 109.47114 * 293.36751 * 4 2 1 34 34 H 1.00898 * 111.00157 * 181.05068 * 6 5 4 35 35 H 1.08996 * 109.47094 * 59.56806 * 7 6 5 36 36 H 1.09000 * 109.46977 * 299.56867 * 7 6 5 37 37 H 1.07994 * 119.97142 * 359.97438 * 9 8 7 38 38 H 1.07998 * 120.03919 * 179.69637 * 10 9 8 39 39 H 0.96999 * 119.99700 * 180.02562 * 16 15 13 40 40 H 1.08010 * 120.03600 * 180.02562 * 21 11 10 41 41 H 1.07999 * 119.96923 * 179.97438 * 22 21 11 42 42 H 1.09005 * 117.50133 * 215.00653 * 23 5 4 43 43 H 1.09006 * 117.49797 * 0.02562 * 23 5 4 44 44 H 1.08998 * 117.50058 * 359.97438 * 24 5 4 45 45 H 1.09002 * 117.50114 * 144.97453 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5609 -0.8672 1.1686 6 7 4.3214 0.3887 1.2185 7 6 4.0109 1.1440 2.4396 8 6 4.8156 2.4179 2.4607 9 6 6.0709 2.4316 3.0411 10 6 6.8083 3.5990 3.0675 11 6 6.2931 4.7570 2.4997 12 8 7.0181 5.9046 2.5186 13 6 8.1783 5.8843 3.2051 14 1 8.5334 4.9610 3.6384 15 6 8.9157 7.0489 3.3549 16 7 10.0476 7.0293 4.0251 17 14 8.3020 8.6458 2.6048 18 1 7.4449 9.3570 3.5872 19 1 9.4611 9.5027 2.2478 20 1 7.5120 8.3476 1.3833 21 6 5.0349 4.7384 1.9121 22 6 4.3002 3.5693 1.8935 23 6 4.1882 -2.0993 1.8238 24 6 4.1173 -1.9957 0.2982 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1217 1.4454 -0.1348 30 1 1.5708 1.9938 -0.8150 31 1 1.7909 1.9159 0.9497 32 1 1.5830 -1.7090 1.3105 33 1 1.7769 -0.1436 2.1352 34 1 5.3124 0.2146 1.1433 35 1 4.2611 0.5417 3.3129 36 1 2.9481 1.3854 2.4571 37 1 6.4728 1.5298 3.4788 38 1 7.7864 3.6103 3.5252 39 1 10.5632 7.8441 4.1301 40 1 4.6317 5.6373 1.4694 41 1 3.3215 3.5543 1.4371 42 1 5.1651 -1.9781 2.2919 43 1 3.5172 -2.8063 2.3118 44 1 3.3998 -2.6346 -0.2167 45 1 5.0474 -1.8063 -0.2377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701479926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:24 Heat of formation + Delta-G solvation = -3.282960 kcal Electronic energy + Delta-G solvation = -22796.617761 eV Core-core repulsion = 19586.464014 eV Total energy + Delta-G solvation = -3210.153747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.95886 -40.07997 -38.41308 -35.93457 -34.72187 -34.18183 -31.81262 -30.55876 -28.22297 -27.74791 -27.45298 -25.39058 -23.66479 -23.32008 -21.87850 -21.41573 -19.87146 -19.75315 -19.10717 -17.24068 -16.87455 -16.49958 -16.24976 -15.71289 -15.54159 -15.38004 -15.23400 -14.75422 -14.60984 -14.39579 -14.27869 -14.06999 -13.86651 -13.52972 -13.11625 -13.05666 -12.93118 -12.57455 -12.49057 -12.42654 -12.34536 -12.12470 -11.98000 -11.90181 -11.49099 -11.40789 -11.27312 -11.08900 -10.90644 -10.77102 -9.78734 -9.14297 -8.87348 -8.50502 -6.22949 0.58701 0.63362 1.31246 1.35230 1.51983 2.27940 2.69534 2.88460 3.06069 3.14787 3.40239 3.79002 3.89193 4.00246 4.06554 4.10131 4.21469 4.29663 4.34526 4.46868 4.51519 4.59778 4.71042 4.80367 4.83698 4.90301 4.91785 4.94959 5.02118 5.05886 5.06463 5.12035 5.25675 5.26795 5.28165 5.35441 5.38293 5.47950 5.58944 5.67421 5.77223 5.82383 5.88634 5.91714 6.16483 6.27729 6.47022 6.84148 7.59281 8.61268 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027954 B = 0.003190 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.402664 B = 8775.665271 C = 9499.170751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.154 4.154 4 C -0.068 4.068 5 C 0.055 3.945 6 N -0.642 5.642 7 C 0.122 3.878 8 C -0.146 4.146 9 C -0.067 4.067 10 C -0.237 4.237 11 C 0.121 3.879 12 O -0.246 6.246 13 C -0.399 4.399 14 H 0.080 0.920 15 C 0.010 3.990 16 N -0.925 5.925 17 Si 0.971 3.029 18 H -0.265 1.265 19 H -0.267 1.267 20 H -0.263 1.263 21 C -0.193 4.193 22 C -0.047 4.047 23 C -0.219 4.219 24 C -0.166 4.166 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.340 0.660 35 H 0.037 0.963 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.106 0.894 39 H 0.285 0.715 40 H 0.126 0.874 41 H 0.148 0.852 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.321 -17.344 -6.837 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 C -0.211 4.211 4 C -0.106 4.106 5 C -0.037 4.037 6 N -0.271 5.271 7 C -0.006 4.006 8 C -0.147 4.147 9 C -0.085 4.085 10 C -0.256 4.256 11 C 0.072 3.928 12 O -0.154 6.154 13 C -0.475 4.475 14 H 0.098 0.902 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.192 1.192 20 H -0.187 1.187 21 C -0.212 4.212 22 C -0.066 4.066 23 C -0.259 4.259 24 C -0.204 4.204 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.158 0.842 35 H 0.056 0.944 36 H 0.109 0.891 37 H 0.148 0.852 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.144 0.856 41 H 0.166 0.834 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.638 -16.654 -7.246 26.024 hybrid contribution 1.331 0.198 0.803 1.567 sum -17.307 -16.456 -6.443 24.736 Atomic orbital electron populations 1.21867 0.95191 1.01732 1.01659 1.20905 0.94992 0.96536 0.97524 1.22122 1.03688 0.95232 1.00106 1.21158 0.89919 1.01035 0.98440 1.21731 0.94112 0.83964 1.03890 1.60431 1.11266 1.18026 1.37389 1.20641 0.99336 0.89988 0.90639 1.19640 0.95441 0.96077 1.03583 1.20908 0.93924 0.96272 0.97433 1.21237 1.02107 0.94151 1.08149 1.19680 0.91798 0.86040 0.95308 1.83519 1.32780 1.32538 1.66538 1.20703 0.96344 0.98347 1.32125 0.90225 1.25283 0.95033 1.01973 0.96576 1.69730 1.14652 1.30957 1.41214 0.85215 0.78330 0.77590 0.79569 1.19024 1.19205 1.18725 1.20530 0.92760 1.00701 1.07250 1.20891 0.99303 0.90382 0.95974 1.23682 1.02854 1.03402 0.95920 1.23150 1.03143 1.00853 0.93233 0.92887 0.92887 0.92303 0.91910 0.89929 0.94488 0.93594 0.90518 0.91620 0.84171 0.94437 0.89128 0.85193 0.87655 0.90579 0.85571 0.83426 0.89633 0.88036 0.87438 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.19 71.98 0.66 -1.27 16 2 C -0.08 -1.24 2.90 -10.79 -0.03 -1.27 16 3 C -0.15 -2.84 7.66 71.98 0.55 -2.29 16 4 C -0.07 -0.98 4.37 30.59 0.13 -0.84 16 5 C 0.06 0.89 1.78 3.53 0.01 0.90 16 6 N -0.64 -12.64 4.10 -474.16 -1.95 -14.59 16 7 C 0.12 2.60 4.94 85.56 0.42 3.02 16 8 C -0.15 -4.22 5.39 -19.83 -0.11 -4.33 16 9 C -0.07 -2.26 9.69 22.25 0.22 -2.04 16 10 C -0.24 -10.42 9.17 22.39 0.21 -10.21 16 11 C 0.12 5.68 6.65 22.58 0.15 5.83 16 12 O -0.25 -13.52 8.59 -22.83 -0.20 -13.72 16 13 C -0.40 -23.76 9.95 67.92 0.68 -23.09 16 14 H 0.08 4.97 5.44 -2.91 -0.02 4.96 16 15 C 0.01 0.56 5.49 84.83 0.47 1.02 16 16 N -0.92 -55.75 13.96 21.61 0.30 -55.44 16 17 Si 0.97 45.86 28.62 68.60 1.96 47.83 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.26 -12.41 7.11 99.48 0.71 -11.71 16 21 C -0.19 -7.41 9.99 22.39 0.22 -7.18 16 22 C -0.05 -1.44 9.69 22.25 0.22 -1.22 16 23 C -0.22 -3.29 10.05 30.62 0.31 -2.98 16 24 C -0.17 -2.45 10.07 30.62 0.31 -2.14 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.08 1.80 5.84 -2.39 -0.01 1.78 16 30 H 0.04 0.68 8.13 -2.38 -0.02 0.66 16 31 H 0.05 0.84 6.42 -2.39 -0.02 0.82 16 32 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 33 H 0.07 0.99 6.66 -2.39 -0.02 0.98 16 34 H 0.34 7.11 8.60 -89.70 -0.77 6.34 16 35 H 0.04 0.78 8.09 -2.39 -0.02 0.76 16 36 H 0.09 1.79 4.92 -2.39 -0.01 1.77 16 37 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 38 H 0.11 5.13 5.64 -2.91 -0.02 5.11 16 39 H 0.28 15.72 8.31 -92.71 -0.77 14.94 16 40 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.15 3.58 7.52 -2.91 -0.02 3.56 16 42 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -63.71 358.48 4.74 -58.98 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.21 Total: 25.06 kcal Atomic # 6 Polarization: -52.51 SS G_CDS: 4.41 Total: -48.11 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -1.64 Total: -70.03 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.20 Total: -13.72 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.96 Total: 47.83 kcal Total: -63.71 4.74 -58.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701479926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.695 kcal (2) G-P(sol) polarization free energy of solvation -63.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds