Wall clock time and date at job start Tue Mar 31 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.53269 * 2 1 4 4 C 1.53112 * 109.50350 * 239.89960 * 2 1 3 5 5 C 1.53117 * 109.16309 * 297.71180 * 4 2 1 6 6 C 1.53043 * 109.28210 * 302.34996 * 5 4 2 7 7 N 1.46844 * 109.52301 * 59.17303 * 6 5 4 8 8 C 1.46897 * 111.00260 * 174.16160 * 7 6 5 9 9 C 1.50693 * 109.47049 * 294.21590 * 8 7 6 10 10 C 1.38303 * 119.92943 * 269.71888 * 9 8 7 11 11 C 1.38104 * 120.06863 * 179.72760 * 10 9 8 12 12 C 1.38875 * 119.93112 * 0.54666 * 11 10 9 13 13 O 1.35745 * 120.07036 * 179.74881 * 12 11 10 14 14 C 1.34837 * 117.00171 * 174.44923 * 13 12 11 15 15 H 1.08002 * 119.99389 * 5.05154 * 14 13 12 16 16 C 1.38648 * 119.99962 * 185.05830 * 14 13 12 17 17 N 1.31553 * 119.99881 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00360 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46982 * 89.99935 * 18 16 14 20 20 H 1.48497 * 109.47462 * 210.00449 * 18 16 14 21 21 H 1.48503 * 109.46786 * 330.00319 * 18 16 14 22 22 C 1.38888 * 119.86021 * 359.73305 * 12 11 10 23 23 C 1.38100 * 119.92906 * 359.97438 * 22 12 11 24 24 C 1.46845 * 111.20153 * 298.26396 * 7 6 5 25 25 H 1.08997 * 109.47245 * 299.90472 * 1 2 3 26 26 H 1.09004 * 109.47061 * 59.90408 * 1 2 3 27 27 H 1.08997 * 109.47080 * 179.89934 * 1 2 3 28 28 H 1.08999 * 109.46520 * 180.09568 * 3 2 1 29 29 H 1.08995 * 109.47157 * 300.09397 * 3 2 1 30 30 H 1.08999 * 109.47193 * 60.09563 * 3 2 1 31 31 H 1.09002 * 109.52366 * 57.61973 * 4 2 1 32 32 H 1.08999 * 109.52194 * 177.81113 * 4 2 1 33 33 H 1.08998 * 109.50295 * 62.28710 * 5 4 2 34 34 H 1.09003 * 109.50548 * 182.36486 * 5 4 2 35 35 H 1.08995 * 109.46529 * 179.19017 * 6 5 4 36 36 H 1.09000 * 109.45707 * 299.17213 * 6 5 4 37 37 H 1.09007 * 109.46540 * 54.21314 * 8 7 6 38 38 H 1.08998 * 109.47215 * 174.20649 * 8 7 6 39 39 H 1.08002 * 119.96883 * 0.02562 * 10 9 8 40 40 H 1.07999 * 120.03412 * 180.27516 * 11 10 9 41 41 H 0.96998 * 120.00257 * 180.02562 * 17 16 14 42 42 H 1.07994 * 120.03332 * 180.02562 * 22 12 11 43 43 H 1.07997 * 119.96236 * 180.02562 * 23 22 12 44 44 H 1.09004 * 109.46325 * 301.72852 * 24 7 6 45 45 H 1.09000 * 109.46983 * 181.75724 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4420 0.0000 4 6 2.0412 -0.7238 -1.2486 5 6 1.5750 -2.1818 -1.2106 6 6 2.0846 -2.8420 0.0726 7 7 1.5676 -2.1135 1.2380 8 6 1.9222 -2.7995 2.4876 9 6 1.2170 -4.1299 2.5478 10 6 -0.0344 -4.2219 3.1293 11 6 -0.6857 -5.4386 3.1810 12 6 -0.0778 -6.5727 2.6585 13 8 -0.7132 -7.7710 2.7123 14 6 -0.1199 -8.8072 2.0860 15 1 0.8568 -8.6824 1.6424 16 6 -0.7638 -10.0329 2.0115 17 7 -0.1851 -11.0437 1.4000 18 14 -2.4529 -10.2489 2.7794 19 1 -3.4980 -9.9190 1.7773 20 1 -2.6189 -11.6565 3.2226 21 1 -2.5846 -9.3430 3.9486 22 6 1.1814 -6.4781 2.0803 23 6 1.8249 -5.2573 2.0263 24 6 2.0409 -0.7234 1.2482 25 1 -0.3633 0.5123 0.8908 26 1 -0.3633 0.5153 -0.8892 27 1 -0.3633 -1.0276 -0.0018 28 1 3.1316 1.4407 -0.0017 29 1 1.6775 1.9567 -0.8891 30 1 1.6802 1.9557 0.8908 31 1 1.6442 -0.2375 -2.1397 32 1 3.1305 -0.6902 -1.2688 33 1 0.4858 -2.2162 -1.2297 34 1 1.9711 -2.7132 -2.0760 35 1 1.7423 -3.8762 0.1096 36 1 3.1743 -2.8195 0.0845 37 1 3.0002 -2.9577 2.5218 38 1 1.6176 -2.1879 3.3369 39 1 -0.5050 -3.3404 3.5392 40 1 -1.6648 -5.5090 3.6313 41 1 -0.6356 -11.9011 1.3475 42 1 1.6565 -7.3581 1.6727 43 1 2.8039 -5.1831 1.5765 44 1 3.1308 -0.7109 1.2545 45 1 1.6669 -0.2188 2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732984430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:57 Heat of formation + Delta-G solvation = -13.859884 kcal Electronic energy + Delta-G solvation = -23136.830890 eV Core-core repulsion = 19926.218493 eV Total energy + Delta-G solvation = -3210.612397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.88766 -39.01358 -36.94287 -34.74903 -32.41771 -32.17837 -30.27058 -29.85104 -27.33271 -26.58681 -26.12830 -24.80057 -22.91321 -22.05973 -21.44279 -20.14493 -18.45694 -17.85582 -17.22072 -15.92436 -15.31952 -15.09240 -14.77879 -14.64559 -14.21070 -14.18181 -13.83762 -13.75516 -13.47543 -13.28930 -12.90885 -12.66183 -12.48726 -12.25064 -12.13768 -12.03916 -11.76285 -11.57550 -11.45441 -11.20514 -11.03268 -10.87845 -10.73402 -10.63582 -10.52978 -10.23134 -10.20743 -10.09491 -9.37258 -8.85898 -8.24826 -8.14661 -7.28613 -6.40976 -4.07539 2.15015 2.20926 3.22618 3.26447 3.41116 3.98622 4.24491 4.52325 4.60115 4.70751 4.76898 4.88614 5.05432 5.11579 5.21282 5.31646 5.33985 5.38639 5.40785 5.50424 5.56460 5.58436 5.66687 5.70822 5.76352 5.79040 5.80506 5.88553 5.89375 5.97304 6.08010 6.13441 6.15329 6.19046 6.29122 6.37316 6.51081 6.59941 6.81199 7.03247 7.16878 7.25480 7.28585 7.36259 7.63491 7.81170 8.05050 8.94570 9.57538 10.66799 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029920 B = 0.003262 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.599491 B = 8581.376721 C = 8740.955127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 C -0.140 4.140 4 C -0.109 4.109 5 C -0.119 4.119 6 C 0.053 3.947 7 N -0.529 5.529 8 C 0.112 3.888 9 C -0.168 4.168 10 C -0.055 4.055 11 C -0.194 4.194 12 C 0.161 3.839 13 O -0.218 6.218 14 C -0.389 4.389 15 H 0.106 0.894 16 C 0.063 3.937 17 N -0.881 5.881 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.221 4.221 23 C -0.068 4.068 24 C 0.067 3.933 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.026 0.974 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.279 0.721 42 H 0.131 0.869 43 H 0.105 0.895 44 H 0.027 0.973 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 21.317 -2.142 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.063 4.063 3 C -0.198 4.198 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.075 4.075 7 N -0.253 5.253 8 C -0.015 4.015 9 C -0.169 4.169 10 C -0.074 4.074 11 C -0.213 4.213 12 C 0.109 3.891 13 O -0.123 6.123 14 C -0.465 4.465 15 H 0.123 0.877 16 C -0.140 4.140 17 N -0.519 5.519 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.240 4.240 23 C -0.087 4.087 24 C -0.061 4.061 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.089 0.911 42 H 0.149 0.851 43 H 0.123 0.877 44 H 0.045 0.955 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.541 21.008 -2.130 21.411 hybrid contribution 0.391 -0.361 0.203 0.569 sum 3.932 20.647 -1.927 21.106 Atomic orbital electron populations 1.21787 0.93745 1.03062 1.00439 1.20574 0.96702 0.94238 0.94763 1.21844 1.00637 0.95611 1.01733 1.21647 0.99991 0.95861 0.97173 1.21630 1.02138 0.95074 0.96810 1.22156 0.96329 0.99143 0.89894 1.61922 1.59918 1.01153 1.02293 1.20790 0.96422 0.92798 0.91452 1.19132 0.97033 0.93613 1.07137 1.20446 0.93630 0.95796 0.97486 1.20211 1.01330 0.91015 1.08744 1.19131 0.91014 0.85808 0.93161 1.83574 1.47299 1.14865 1.66608 1.20761 1.03958 0.87502 1.34230 0.87682 1.24461 0.99427 0.93986 0.96125 1.69644 1.38928 1.02225 1.41090 0.86183 0.82699 0.77479 0.80556 1.19878 1.20820 1.18353 1.21233 0.96666 0.98543 1.07597 1.20641 0.98301 0.92092 0.97621 1.22113 0.96757 0.89429 0.97848 0.93238 0.93714 0.90782 0.92999 0.92586 0.92661 0.92093 0.92588 0.90755 0.91839 0.89562 0.95626 0.95071 0.90876 0.86949 0.86636 0.91075 0.85090 0.87730 0.95463 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 8.04 37.16 0.30 -1.03 16 2 C -0.06 -0.59 0.77 -154.42 -0.12 -0.71 16 3 C -0.14 -1.09 8.48 37.16 0.32 -0.78 16 4 C -0.11 -1.04 4.79 -26.61 -0.13 -1.17 16 5 C -0.12 -1.32 5.74 -26.65 -0.15 -1.47 16 6 C 0.05 0.67 5.15 -3.83 -0.02 0.65 16 7 N -0.53 -6.63 3.93 -236.11 -0.93 -7.55 16 8 C 0.11 1.48 5.12 -4.98 -0.03 1.46 16 9 C -0.17 -2.74 4.89 -104.58 -0.51 -3.25 16 10 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 11 C -0.19 -3.85 9.99 -39.39 -0.39 -4.24 16 12 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 13 O -0.22 -5.79 8.59 0.04 0.00 -5.79 16 14 C -0.39 -10.99 9.95 30.88 0.31 -10.68 16 15 H 0.11 3.03 5.44 -52.49 -0.29 2.74 16 16 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 17 N -0.88 -25.53 13.96 55.48 0.77 -24.75 16 18 Si 0.91 21.77 28.62 -169.99 -4.86 16.90 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.22 -4.74 9.17 -39.39 -0.36 -5.10 16 23 C -0.07 -1.21 7.86 -39.61 -0.31 -1.52 16 24 C 0.07 0.70 4.18 -3.83 -0.02 0.68 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.88 6.01 -51.93 -0.31 0.56 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.89 6.58 -51.93 -0.34 0.55 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.28 5.74 -51.93 -0.30 0.98 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.03 0.40 8.07 -51.93 -0.42 -0.02 16 38 H 0.07 0.89 7.93 -51.93 -0.41 0.47 16 39 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.13 2.97 5.64 -52.49 -0.30 2.67 16 43 H 0.10 1.65 7.95 -52.49 -0.42 1.23 16 44 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.71 8.02 -51.93 -0.42 0.30 16 LS Contribution 349.59 15.07 5.27 5.27 Total: -1.00 -28.57 349.59 -9.01 -37.58 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.41 Total: 1.69 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -1.86 Total: -23.34 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: -0.15 Total: -32.31 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: 0.00 Total: -5.79 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.86 Total: 16.90 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.57 -9.01 -37.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732984430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.722 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds