Wall clock time and date at job start Tue Mar 31 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.53269 * 2 1 4 4 C 1.53112 * 109.50350 * 239.89960 * 2 1 3 5 5 C 1.53117 * 109.16309 * 297.71180 * 4 2 1 6 6 C 1.53043 * 109.28210 * 302.34996 * 5 4 2 7 7 N 1.46844 * 109.52301 * 59.17303 * 6 5 4 8 8 C 1.46897 * 111.00260 * 174.16160 * 7 6 5 9 9 C 1.50693 * 109.47049 * 294.21590 * 8 7 6 10 10 C 1.38303 * 119.92943 * 269.71888 * 9 8 7 11 11 C 1.38104 * 120.06863 * 179.72760 * 10 9 8 12 12 C 1.38875 * 119.93112 * 0.54666 * 11 10 9 13 13 O 1.35745 * 120.07036 * 179.74881 * 12 11 10 14 14 C 1.34837 * 117.00171 * 174.44923 * 13 12 11 15 15 H 1.08002 * 119.99389 * 5.05154 * 14 13 12 16 16 C 1.38648 * 119.99962 * 185.05830 * 14 13 12 17 17 N 1.31553 * 119.99881 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00360 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46982 * 89.99935 * 18 16 14 20 20 H 1.48497 * 109.47462 * 210.00449 * 18 16 14 21 21 H 1.48503 * 109.46786 * 330.00319 * 18 16 14 22 22 C 1.38888 * 119.86021 * 359.73305 * 12 11 10 23 23 C 1.38100 * 119.92906 * 359.97438 * 22 12 11 24 24 C 1.46845 * 111.20153 * 298.26396 * 7 6 5 25 25 H 1.08997 * 109.47245 * 299.90472 * 1 2 3 26 26 H 1.09004 * 109.47061 * 59.90408 * 1 2 3 27 27 H 1.08997 * 109.47080 * 179.89934 * 1 2 3 28 28 H 1.08999 * 109.46520 * 180.09568 * 3 2 1 29 29 H 1.08995 * 109.47157 * 300.09397 * 3 2 1 30 30 H 1.08999 * 109.47193 * 60.09563 * 3 2 1 31 31 H 1.09002 * 109.52366 * 57.61973 * 4 2 1 32 32 H 1.08999 * 109.52194 * 177.81113 * 4 2 1 33 33 H 1.08998 * 109.50295 * 62.28710 * 5 4 2 34 34 H 1.09003 * 109.50548 * 182.36486 * 5 4 2 35 35 H 1.08995 * 109.46529 * 179.19017 * 6 5 4 36 36 H 1.09000 * 109.45707 * 299.17213 * 6 5 4 37 37 H 1.09007 * 109.46540 * 54.21314 * 8 7 6 38 38 H 1.08998 * 109.47215 * 174.20649 * 8 7 6 39 39 H 1.08002 * 119.96883 * 0.02562 * 10 9 8 40 40 H 1.07999 * 120.03412 * 180.27516 * 11 10 9 41 41 H 0.96998 * 120.00257 * 180.02562 * 17 16 14 42 42 H 1.07994 * 120.03332 * 180.02562 * 22 12 11 43 43 H 1.07997 * 119.96236 * 180.02562 * 23 22 12 44 44 H 1.09004 * 109.46325 * 301.72852 * 24 7 6 45 45 H 1.09000 * 109.46983 * 181.75724 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4420 0.0000 4 6 2.0412 -0.7238 -1.2486 5 6 1.5750 -2.1818 -1.2106 6 6 2.0846 -2.8420 0.0726 7 7 1.5676 -2.1135 1.2380 8 6 1.9222 -2.7995 2.4876 9 6 1.2170 -4.1299 2.5478 10 6 -0.0344 -4.2219 3.1293 11 6 -0.6857 -5.4386 3.1810 12 6 -0.0778 -6.5727 2.6585 13 8 -0.7132 -7.7710 2.7123 14 6 -0.1199 -8.8072 2.0860 15 1 0.8568 -8.6824 1.6424 16 6 -0.7638 -10.0329 2.0115 17 7 -0.1851 -11.0437 1.4000 18 14 -2.4529 -10.2489 2.7794 19 1 -3.4980 -9.9190 1.7773 20 1 -2.6189 -11.6565 3.2226 21 1 -2.5846 -9.3430 3.9486 22 6 1.1814 -6.4781 2.0803 23 6 1.8249 -5.2573 2.0263 24 6 2.0409 -0.7234 1.2482 25 1 -0.3633 0.5123 0.8908 26 1 -0.3633 0.5153 -0.8892 27 1 -0.3633 -1.0276 -0.0018 28 1 3.1316 1.4407 -0.0017 29 1 1.6775 1.9567 -0.8891 30 1 1.6802 1.9557 0.8908 31 1 1.6442 -0.2375 -2.1397 32 1 3.1305 -0.6902 -1.2688 33 1 0.4858 -2.2162 -1.2297 34 1 1.9711 -2.7132 -2.0760 35 1 1.7423 -3.8762 0.1096 36 1 3.1743 -2.8195 0.0845 37 1 3.0002 -2.9577 2.5218 38 1 1.6176 -2.1879 3.3369 39 1 -0.5050 -3.3404 3.5392 40 1 -1.6648 -5.5090 3.6313 41 1 -0.6356 -11.9011 1.3475 42 1 1.6565 -7.3581 1.6727 43 1 2.8039 -5.1831 1.5765 44 1 3.1308 -0.7109 1.2545 45 1 1.6669 -0.2188 2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732984430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:56 Heat of formation + Delta-G solvation = -28.988061 kcal Electronic energy + Delta-G solvation = -23137.486897 eV Core-core repulsion = 19926.218493 eV Total energy + Delta-G solvation = -3211.268404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09010 -40.41742 -38.50469 -35.82213 -34.43835 -33.11898 -31.83492 -31.25617 -28.03573 -27.80554 -27.33870 -26.36913 -23.93758 -23.62406 -22.56095 -21.52709 -19.78446 -19.26596 -19.06615 -16.88725 -16.70597 -16.50404 -16.06353 -15.70461 -15.60885 -15.47718 -15.35341 -14.97288 -14.82921 -14.32918 -14.24759 -14.17959 -14.02551 -13.66938 -13.09496 -12.94487 -12.76895 -12.70568 -12.65987 -12.45901 -12.39568 -12.17747 -12.07017 -11.93118 -11.84195 -11.35395 -11.25873 -11.07104 -11.03123 -10.88810 -9.77036 -9.20465 -8.92343 -8.50304 -6.22776 0.58256 0.64164 1.31067 1.35351 1.51876 2.28029 2.70362 2.96763 3.14381 3.31559 3.76958 3.89027 3.96219 4.04099 4.05294 4.19143 4.28372 4.39040 4.44042 4.54651 4.59515 4.65035 4.69858 4.71221 4.77155 4.86432 4.87386 4.93790 4.98971 5.01605 5.07124 5.13996 5.18824 5.24068 5.27184 5.35000 5.38550 5.42505 5.50904 5.59150 5.70283 5.77156 5.82029 5.91466 6.19469 6.24358 6.32565 6.84278 7.59357 8.61528 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029920 B = 0.003262 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.599491 B = 8581.376721 C = 8740.955127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.061 4.061 3 C -0.136 4.136 4 C -0.106 4.106 5 C -0.117 4.117 6 C 0.053 3.947 7 N -0.536 5.536 8 C 0.113 3.887 9 C -0.142 4.142 10 C -0.048 4.048 11 C -0.193 4.193 12 C 0.120 3.880 13 O -0.246 6.246 14 C -0.399 4.399 15 H 0.079 0.921 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.971 3.029 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.262 1.262 22 C -0.237 4.237 23 C -0.066 4.066 24 C 0.067 3.933 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.040 0.960 38 H 0.096 0.904 39 H 0.151 0.849 40 H 0.127 0.873 41 H 0.285 0.715 42 H 0.105 0.895 43 H 0.125 0.875 44 H 0.032 0.968 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.109 25.112 -1.416 25.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.062 4.062 3 C -0.194 4.194 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.075 4.075 7 N -0.260 5.260 8 C -0.014 4.014 9 C -0.143 4.143 10 C -0.067 4.067 11 C -0.212 4.212 12 C 0.071 3.929 13 O -0.154 6.154 14 C -0.475 4.475 15 H 0.097 0.903 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.187 1.187 22 C -0.256 4.256 23 C -0.084 4.084 24 C -0.061 4.061 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.114 0.886 39 H 0.169 0.831 40 H 0.145 0.855 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.143 0.857 44 H 0.050 0.950 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.401 24.854 -1.404 25.125 hybrid contribution 0.605 -1.200 -0.054 1.345 sum 4.006 23.655 -1.458 24.036 Atomic orbital electron populations 1.21739 0.94177 1.01760 1.01019 1.20588 0.96278 0.95215 0.94092 1.21796 1.00922 0.94257 1.02394 1.21630 1.00270 0.94577 0.97834 1.21603 1.01360 0.96371 0.96176 1.22103 0.96568 0.97924 0.90898 1.61878 1.60315 1.02178 1.01615 1.20828 0.96553 0.91158 0.92820 1.19610 0.96431 0.94698 1.03563 1.20888 0.93541 0.95827 0.96415 1.20526 1.01952 0.90839 1.07841 1.19664 0.92046 0.85885 0.95293 1.83515 1.48017 1.15541 1.68296 1.20697 1.03405 0.88766 1.34631 0.90318 1.25283 1.03264 0.93542 0.96784 1.69728 1.40777 1.02909 1.43167 0.85210 0.78023 0.77919 0.79514 1.19086 1.19162 1.18671 1.21219 0.96808 0.99275 1.08326 1.20857 0.99070 0.91194 0.97324 1.22192 0.97085 0.87912 0.98868 0.92825 0.93038 0.92932 0.92516 0.91995 0.92014 0.91202 0.92107 0.91937 0.91520 0.92238 0.95130 0.94159 0.88556 0.83114 0.85466 0.90581 0.87717 0.85686 0.94997 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.04 71.98 0.58 -1.64 16 2 C -0.06 -0.95 0.77 -52.13 -0.04 -0.99 16 3 C -0.14 -1.61 8.48 71.98 0.61 -1.00 16 4 C -0.11 -1.73 4.79 30.67 0.15 -1.59 16 5 C -0.12 -2.42 5.74 30.65 0.18 -2.25 16 6 C 0.05 1.25 5.15 86.33 0.44 1.69 16 7 N -0.54 -11.75 3.93 -900.93 -3.54 -15.29 16 8 C 0.11 2.56 5.12 85.56 0.44 3.00 16 9 C -0.14 -4.28 4.89 -19.84 -0.10 -4.37 16 10 C -0.05 -1.50 9.69 22.25 0.22 -1.29 16 11 C -0.19 -7.46 9.99 22.39 0.22 -7.24 16 12 C 0.12 5.72 6.65 22.58 0.15 5.87 16 13 O -0.25 -13.62 8.59 -22.76 -0.20 -13.81 16 14 C -0.40 -23.92 9.95 67.92 0.68 -23.24 16 15 H 0.08 4.96 5.44 -2.91 -0.02 4.94 16 16 C 0.01 0.55 5.49 84.83 0.47 1.02 16 17 N -0.92 -56.01 13.96 21.61 0.30 -55.71 16 18 Si 0.97 46.07 28.62 68.60 1.96 48.03 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 22 C -0.24 -10.62 9.17 22.39 0.21 -10.41 16 23 C -0.07 -2.32 7.86 22.25 0.17 -2.14 16 24 C 0.07 1.15 4.18 86.33 0.36 1.51 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.05 1.13 6.01 -2.39 -0.01 1.12 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.44 6.58 -2.39 -0.02 1.42 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.71 5.74 -2.39 -0.01 1.70 16 36 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.04 0.88 8.07 -2.38 -0.02 0.86 16 38 H 0.10 1.82 7.93 -2.39 -0.02 1.80 16 39 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 40 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 41 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 42 H 0.10 5.19 5.64 -2.91 -0.02 5.18 16 43 H 0.13 3.83 7.95 -2.91 -0.02 3.81 16 44 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 45 H 0.08 1.27 8.02 -2.39 -0.02 1.25 16 Total: -1.00 -65.10 349.59 4.21 -60.89 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.95 Total: 18.97 kcal Atomic # 6 Polarization: -47.81 SS G_CDS: 4.73 Total: -43.08 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -3.24 Total: -71.00 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.20 Total: -13.81 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.96 Total: 48.03 kcal Total: -65.10 4.21 -60.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732984430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.898 kcal (2) G-P(sol) polarization free energy of solvation -65.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds