Wall clock time and date at job start Tue Mar 31 2020 06:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47116 * 59.99479 * 9 7 5 11 11 H 1.48490 * 109.47381 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46756 * 300.00079 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46901 * 109.46769 * 299.99531 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.50700 * 109.47183 * 180.02562 * 15 14 13 17 17 C 1.38293 * 120.11528 * 269.72543 * 16 15 14 18 18 C 1.37931 * 120.35216 * 179.97438 * 17 16 15 19 19 C 1.39290 * 120.23663 * 0.54853 * 18 17 16 20 20 C 1.38885 * 118.87518 * 359.41409 * 19 18 17 21 21 C 1.37733 * 120.78976 * 0.41760 * 20 19 18 22 22 C 1.51647 * 107.03301 * 180.68209 * 20 19 18 23 23 C 1.54704 * 101.92560 * 15.46903 * 22 20 19 24 24 O 1.36135 * 129.88205 * 179.09467 * 19 18 17 25 25 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 26 26 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 27 27 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 30 30 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 31 31 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 33 33 H 0.97000 * 119.99425 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 35 35 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 36 36 H 1.00899 * 111.00283 * 303.95539 * 14 13 2 37 37 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 38 38 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 39 39 H 1.08004 * 119.82165 * 0.17232 * 17 16 15 40 40 H 1.07995 * 119.88133 * 180.27840 * 18 17 16 41 41 H 1.07999 * 120.01579 * 179.77217 * 21 20 19 42 42 H 1.08995 * 110.93987 * 133.63115 * 22 20 19 43 43 H 1.09000 * 110.93655 * 257.27804 * 22 20 19 44 44 H 1.09003 * 110.74497 * 93.01884 * 23 22 20 45 45 H 1.08996 * 110.75375 * 216.18811 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6278 -1.5504 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 1.7440 1.7995 -5.2567 11 1 1.7436 -0.3007 -6.4697 12 1 -0.2361 0.3995 -5.2576 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0220 -0.6947 3.6703 16 6 1.5004 0.0419 4.8771 17 6 2.2392 1.0686 5.4362 18 6 1.7663 1.7464 6.5405 19 6 0.5445 1.3944 7.1094 20 6 -0.1887 0.3623 6.5384 21 6 0.2838 -0.3108 5.4335 22 6 -1.4614 0.2194 7.3504 23 6 -1.4837 1.5461 8.1459 24 8 -0.0939 1.9111 8.1951 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.1299 -0.7209 -1.2496 32 1 1.6766 -1.7490 -1.2493 33 1 2.8627 -1.8813 -4.7337 34 1 1.6767 -1.7490 1.2492 35 1 3.1301 -0.7209 1.2494 36 1 1.8199 0.9435 2.4401 37 1 1.6588 -1.7222 3.6873 38 1 3.1119 -0.6941 3.6867 39 1 3.1901 1.3433 5.0039 40 1 2.3474 2.5499 6.9682 41 1 -0.2950 -1.1140 5.0018 42 1 -2.3320 0.1408 6.6995 43 1 -1.4009 -0.6370 8.0220 44 1 -2.0633 2.3033 7.6178 45 1 -1.8801 1.3884 9.1489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742368813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:27 Heat of formation + Delta-G solvation = -41.791314 kcal Electronic energy + Delta-G solvation = -22454.393301 eV Core-core repulsion = 19242.569706 eV Total energy + Delta-G solvation = -3211.823595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.99122 -39.46180 -38.49887 -35.68463 -34.19905 -33.57989 -31.40072 -30.12278 -28.96504 -27.87862 -27.27340 -25.70225 -24.29212 -23.78823 -22.86033 -21.74010 -19.52890 -18.31484 -18.31377 -17.63116 -17.09235 -16.96183 -16.57175 -15.71551 -15.69309 -15.18194 -15.02532 -14.75389 -14.42822 -14.29079 -14.09458 -13.89242 -13.84899 -13.46992 -13.33519 -13.12679 -12.76008 -12.71812 -12.63923 -12.41521 -12.33283 -12.20888 -12.13263 -11.89234 -11.70112 -11.64753 -11.35540 -10.84491 -10.73200 -10.48619 -9.81493 -9.31947 -8.97648 -8.12770 -6.19568 0.31410 0.40481 1.41533 1.43626 1.50936 2.33838 2.44682 2.69518 3.21048 3.45826 3.51751 3.69143 3.95141 4.02889 4.14010 4.17699 4.23469 4.28364 4.41397 4.43702 4.45794 4.66588 4.70271 4.73870 4.82247 4.84600 4.88877 4.92435 4.98391 5.09828 5.17307 5.22694 5.23669 5.29969 5.43062 5.53467 5.55607 5.60150 5.64201 5.67377 5.68525 5.89222 5.94422 6.09203 6.24623 6.38713 6.53873 6.95424 7.47554 8.99331 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.034459 B = 0.002643 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.362664 B =10592.572589 C =10765.872688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.055 4.055 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.269 1.269 13 C 0.082 3.918 14 N -0.679 5.679 15 C 0.104 3.896 16 C -0.110 4.110 17 C -0.082 4.082 18 C -0.148 4.148 19 C 0.082 3.918 20 C -0.186 4.186 21 C -0.058 4.058 22 C -0.108 4.108 23 C 0.046 3.954 24 O -0.326 6.326 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.030 0.970 28 H 0.037 0.963 29 H 0.045 0.955 30 H 0.065 0.935 31 H -0.015 1.015 32 H -0.015 1.015 33 H 0.259 0.741 34 H 0.059 0.941 35 H 0.020 0.980 36 H 0.343 0.657 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 5.361 24.680 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.055 4.055 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.083 0.917 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.194 1.194 13 C -0.047 4.047 14 N -0.311 5.311 15 C -0.025 4.025 16 C -0.110 4.110 17 C -0.100 4.100 18 C -0.166 4.166 19 C 0.037 3.963 20 C -0.187 4.187 21 C -0.076 4.076 22 C -0.145 4.145 23 C -0.028 4.028 24 O -0.241 6.241 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.003 0.997 32 H 0.003 0.997 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.163 0.837 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.102 0.898 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.537 5.061 24.743 26.087 hybrid contribution 0.864 0.137 -1.298 1.565 sum -5.673 5.197 23.445 24.675 Atomic orbital electron populations 1.21492 0.94412 1.00070 1.00363 1.20486 0.96212 0.95560 0.93236 1.21682 0.99515 0.95690 1.01063 1.19011 0.94020 0.94127 0.92651 1.21594 1.30206 1.11952 0.91496 0.91693 1.25912 0.95737 0.95919 1.02534 1.70103 1.38796 1.24950 1.24061 0.85648 0.78917 0.78807 0.78576 1.19301 1.21361 1.19385 1.21837 0.96006 0.97592 0.89287 1.60565 1.63599 1.06557 1.00370 1.20796 0.97296 0.97726 0.86647 1.19710 0.95406 0.98448 0.97477 1.20977 1.00083 0.94377 0.94610 1.20433 0.95344 1.03060 0.97773 1.19835 0.94994 0.93453 0.88025 1.21077 0.99658 0.98690 0.99268 1.20329 0.94917 0.99002 0.93400 1.21875 0.95421 0.99129 0.98075 1.24101 0.79458 0.95579 1.03648 1.86778 1.23399 1.73846 1.40104 0.91586 0.94410 0.95036 0.94337 0.93556 0.91596 0.99670 0.99672 0.93180 0.92264 0.96133 0.83706 0.90310 0.93845 0.83831 0.84411 0.85096 0.87697 0.88163 0.89789 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.03 8.06 71.98 0.58 -3.45 16 2 C -0.05 -2.15 0.60 -52.18 -0.03 -2.18 16 3 C -0.12 -4.40 7.89 71.98 0.57 -3.83 16 4 C 0.04 2.04 4.04 29.85 0.12 2.16 16 5 C -0.51 -28.50 7.65 25.60 0.20 -28.31 16 6 H 0.07 3.45 5.68 -2.91 -0.02 3.43 16 7 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 8 N -0.94 -57.43 13.29 21.45 0.28 -57.15 16 9 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 13 C 0.08 2.74 4.65 86.30 0.40 3.14 16 14 N -0.68 -18.32 5.70 -517.91 -2.95 -21.27 16 15 C 0.10 2.37 5.82 85.56 0.50 2.87 16 16 C -0.11 -2.38 5.40 -19.82 -0.11 -2.49 16 17 C -0.08 -1.64 9.68 22.21 0.21 -1.43 16 18 C -0.15 -3.06 10.06 22.45 0.23 -2.83 16 19 C 0.08 1.82 7.04 22.68 0.16 1.98 16 20 C -0.19 -3.80 6.27 -19.53 -0.12 -3.92 16 21 C -0.06 -1.24 9.70 22.18 0.22 -1.02 16 22 C -0.11 -1.47 7.12 30.73 0.22 -1.25 16 23 C 0.05 0.59 8.01 72.56 0.58 1.17 16 24 O -0.33 -6.82 11.10 -95.09 -1.06 -7.88 16 25 H 0.07 2.19 7.60 -2.39 -0.02 2.18 16 26 H 0.04 1.54 6.62 -2.39 -0.02 1.52 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.82 6.62 -2.38 -0.02 1.81 16 30 H 0.07 1.94 6.57 -2.39 -0.02 1.92 16 31 H -0.02 -0.86 8.14 -2.39 -0.02 -0.87 16 32 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 33 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.34 8.85 6.76 -89.69 -0.61 8.24 16 37 H 0.08 1.79 8.09 -2.39 -0.02 1.77 16 38 H 0.04 0.94 8.09 -2.39 -0.02 0.92 16 39 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 41 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 42 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -66.08 358.32 2.84 -63.24 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.36 Total: 15.67 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 4.18 Total: -39.18 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -2.67 Total: -78.42 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -1.06 Total: -7.88 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.08 2.84 -63.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742368813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.451 kcal (2) G-P(sol) polarization free energy of solvation -66.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds