Wall clock time and date at job start Tue Mar 31 2020 06:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47375 * 2 1 4 4 C 1.52994 * 109.47137 * 59.99587 * 3 2 1 5 5 C 1.53004 * 109.46766 * 299.99721 * 3 2 1 6 6 C 1.52996 * 109.47010 * 179.97438 * 3 2 1 7 7 N 1.46507 * 109.47103 * 179.97438 * 6 3 2 8 8 C 1.34773 * 120.00266 * 180.02562 * 7 6 3 9 9 O 1.21282 * 119.99503 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00092 * 180.02562 * 8 7 6 11 11 C 1.50707 * 109.47262 * 179.97438 * 10 8 7 12 12 C 1.37643 * 120.12639 * 265.30991 * 11 10 8 13 13 C 1.38615 * 120.24281 * 180.31829 * 12 11 10 14 14 C 1.38658 * 120.50051 * 359.66907 * 13 12 11 15 15 C 1.37593 * 120.25264 * 0.02562 * 14 13 12 16 16 C 1.40688 * 120.12508 * 84.99750 * 11 10 8 17 17 C 1.41401 * 120.24844 * 359.97438 * 16 11 10 18 18 H 1.07999 * 119.99289 * 334.28466 * 17 16 11 19 19 C 1.39937 * 120.00394 * 154.28925 * 17 16 11 20 20 N 1.30829 * 120.00181 * 334.60180 * 19 17 16 21 21 Si 1.86801 * 120.00083 * 154.60226 * 19 17 16 22 22 H 1.48505 * 109.47160 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47100 * 300.00105 * 21 19 17 24 24 H 1.48502 * 109.47051 * 60.00179 * 21 19 17 25 25 H 1.09008 * 109.47151 * 59.99876 * 1 2 3 26 26 H 1.08999 * 109.47700 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46941 * 300.00573 * 1 2 3 28 28 H 1.09001 * 109.47080 * 239.99941 * 2 1 3 29 29 H 1.08998 * 109.46872 * 119.99644 * 2 1 3 30 30 H 1.09009 * 109.46861 * 179.97438 * 4 3 2 31 31 H 1.08993 * 109.47464 * 299.99973 * 4 3 2 32 32 H 1.09003 * 109.46917 * 60.00707 * 4 3 2 33 33 H 1.09001 * 109.47500 * 299.99943 * 5 3 2 34 34 H 1.09003 * 109.47330 * 60.00431 * 5 3 2 35 35 H 1.08997 * 109.46981 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47212 * 60.00084 * 6 3 2 37 37 H 1.08991 * 109.47261 * 299.99917 * 6 3 2 38 38 H 0.97000 * 119.99705 * 0.02562 * 7 6 3 39 39 H 1.09001 * 109.46892 * 59.99768 * 10 8 7 40 40 H 1.08991 * 109.47294 * 299.99778 * 10 8 7 41 41 H 1.07998 * 119.87840 * 0.02562 * 12 11 10 42 42 H 1.07996 * 119.74749 * 179.68975 * 13 12 11 43 43 H 1.08000 * 119.87393 * 180.02562 * 14 13 12 44 44 H 1.07996 * 120.12941 * 180.02562 * 15 14 13 45 45 H 0.96998 * 119.99709 * 354.17607 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2491 5 6 1.5301 2.1637 -1.2493 6 6 3.5700 1.4424 0.0006 7 7 4.0584 2.8236 0.0000 8 6 5.3835 3.0699 -0.0001 9 8 6.1715 2.1480 0.0008 10 6 5.8858 4.4906 -0.0001 11 6 7.3929 4.4906 0.0004 12 6 8.0834 4.5881 1.1871 13 6 9.4695 4.5950 1.1899 14 6 10.1761 4.4971 0.0008 15 6 9.5067 4.3924 -1.1967 16 6 8.0994 4.3843 -1.2116 17 6 7.4008 4.2764 -2.4362 18 1 6.4016 3.8671 -2.4535 19 6 8.0042 4.6998 -3.6257 20 7 8.9416 5.6120 -3.5951 21 14 7.4713 3.9626 -5.2573 22 1 8.2574 4.5759 -6.3579 23 1 7.7059 2.4964 -5.2381 24 1 6.0266 4.2301 -5.4730 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8938 3.1913 1.2493 31 1 0.4401 2.1638 1.2491 32 1 1.8934 1.6500 2.1392 33 1 1.8934 1.6498 -2.1393 34 1 0.4400 2.1638 -1.2494 35 1 1.8930 3.1914 -1.2491 36 1 3.9337 0.9284 -0.8891 37 1 3.9329 0.9287 0.8908 38 1 3.4281 3.5609 -0.0003 39 1 5.5225 5.0045 0.8899 40 1 5.5225 5.0044 -0.8900 41 1 7.5431 4.6644 2.1192 42 1 10.0031 4.6769 2.1252 43 1 11.2560 4.5030 0.0148 44 1 10.0591 4.3158 -2.1216 45 1 9.1596 6.0555 -2.7605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758105044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:33 Heat of formation + Delta-G solvation = -52.609192 kcal Electronic energy + Delta-G solvation = -23227.528767 eV Core-core repulsion = 20015.236073 eV Total energy + Delta-G solvation = -3212.292693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.57686 -38.20138 -37.20921 -33.80327 -33.62016 -31.76036 -30.15591 -29.16015 -27.52512 -27.46449 -26.06149 -24.82454 -23.22616 -20.88809 -20.53680 -19.57175 -18.72981 -17.68574 -16.54498 -15.67332 -15.33976 -14.88192 -14.79955 -14.73141 -14.24740 -14.10355 -13.80828 -13.58945 -13.25934 -13.01169 -12.36372 -12.27544 -12.15889 -12.13690 -11.97699 -11.89162 -11.68773 -11.32509 -11.18645 -11.05036 -10.84067 -10.73168 -10.68928 -10.60733 -10.42068 -10.35376 -9.59798 -9.33092 -9.13720 -8.90818 -8.62889 -7.50092 -7.45178 -7.07282 -4.36708 2.80837 2.90209 3.18362 3.32280 3.39027 3.40828 3.71733 4.06175 4.54359 4.62409 4.62925 4.65074 5.07741 5.16198 5.26635 5.39031 5.46223 5.49820 5.63306 5.67606 5.74181 5.76913 5.82330 5.85754 5.91561 5.94187 5.99657 6.01220 6.14492 6.22325 6.25286 6.28035 6.38301 6.41569 6.73988 6.86336 7.05522 7.26572 7.47638 7.73215 7.88138 7.91603 7.98701 8.02380 8.26576 8.40409 8.84503 8.91880 8.98213 10.12112 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.004610 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.087366 B = 6072.502159 C = 7439.098940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.076 4.076 4 C -0.143 4.143 5 C -0.144 4.144 6 C 0.131 3.869 7 N -0.742 5.742 8 C 0.513 3.487 9 O -0.523 6.523 10 C -0.070 4.070 11 C -0.183 4.183 12 C -0.070 4.070 13 C -0.253 4.253 14 C -0.087 4.087 15 C -0.216 4.216 16 C 0.116 3.884 17 C -0.517 4.517 18 H 0.072 0.928 19 C 0.041 3.959 20 N -0.800 5.800 21 Si 1.060 2.940 22 H -0.274 1.274 23 H -0.275 1.275 24 H -0.277 1.277 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.394 0.606 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.941 -4.679 4.620 17.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.077 4.077 4 C -0.200 4.200 5 C -0.202 4.202 6 C 0.007 3.993 7 N -0.398 5.398 8 C 0.301 3.699 9 O -0.397 6.397 10 C -0.110 4.110 11 C -0.185 4.185 12 C -0.088 4.088 13 C -0.273 4.273 14 C -0.105 4.105 15 C -0.236 4.236 16 C 0.114 3.886 17 C -0.545 4.545 18 H 0.090 0.910 19 C -0.181 4.181 20 N -0.423 5.423 21 Si 0.884 3.116 22 H -0.199 1.199 23 H -0.201 1.201 24 H -0.203 1.203 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.229 0.771 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.122 0.878 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.975 -5.306 2.982 16.165 hybrid contribution -0.553 0.246 1.742 1.844 sum -15.527 -5.061 4.725 17.001 Atomic orbital electron populations 1.21873 0.95735 1.01449 1.02063 1.21499 0.95994 0.95131 1.02364 1.20810 0.94365 0.96231 0.96281 1.21927 1.00951 1.00284 0.96877 1.21937 1.00890 1.00424 0.96924 1.21262 0.91944 0.84171 1.01904 1.46171 1.07514 1.07879 1.78213 1.21172 0.81115 0.92681 0.74968 1.90679 1.55142 1.46518 1.47320 1.20246 0.95765 0.92340 1.02672 1.19016 0.91452 1.14262 0.93732 1.20356 0.93997 0.98984 0.95461 1.20256 0.93748 1.17048 0.96201 1.20598 0.97255 0.99377 0.93300 1.21138 0.94520 1.11342 0.96566 1.17390 0.91431 0.87698 0.92117 1.20439 1.03330 1.38346 0.92374 0.90993 1.26914 0.92933 0.93801 1.04450 1.70450 1.23421 1.14943 1.33516 0.83716 0.76745 0.77076 0.74068 1.19894 1.20066 1.20274 0.92374 0.92956 0.92466 0.91661 0.91783 0.92575 0.92215 0.92530 0.92319 0.92239 0.92473 0.91885 0.92108 0.77145 0.90761 0.88751 0.89651 0.89491 0.89416 0.87775 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.21 37.16 0.34 -0.78 16 2 C -0.11 -0.97 4.99 -26.73 -0.13 -1.11 16 3 C -0.08 -0.74 0.56 -154.51 -0.09 -0.83 16 4 C -0.14 -1.24 7.95 37.15 0.30 -0.95 16 5 C -0.14 -1.35 7.95 37.16 0.30 -1.06 16 6 C 0.13 1.77 4.56 -4.04 -0.02 1.75 16 7 N -0.74 -11.01 4.96 -60.30 -0.30 -11.31 16 8 C 0.51 10.26 7.46 -10.99 -0.08 10.17 16 9 O -0.52 -12.95 16.03 5.56 0.09 -12.86 16 10 C -0.07 -1.41 5.18 -29.03 -0.15 -1.56 16 11 C -0.18 -4.47 4.43 -103.91 -0.46 -4.93 16 12 C -0.07 -1.63 9.66 -39.66 -0.38 -2.02 16 13 C -0.25 -5.96 10.05 -39.29 -0.39 -6.35 16 14 C -0.09 -2.13 10.02 -39.66 -0.40 -2.53 16 15 C -0.22 -5.81 7.95 -38.87 -0.31 -6.11 16 16 C 0.12 3.15 5.30 -106.82 -0.57 2.58 16 17 C -0.52 -13.83 8.08 -37.74 -0.30 -14.13 16 18 H 0.07 1.90 6.73 -52.49 -0.35 1.54 16 19 C 0.04 1.05 4.94 -17.34 -0.09 0.96 16 20 N -0.80 -21.45 12.31 55.55 0.68 -20.77 16 21 Si 1.06 22.27 30.00 -169.99 -5.10 17.17 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 25 H 0.06 0.41 6.43 -51.92 -0.33 0.08 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.49 6.86 -51.92 -0.36 0.13 16 31 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 35 H 0.06 0.55 6.86 -51.93 -0.36 0.19 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.39 4.71 6.16 -40.82 -0.25 4.46 16 39 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 40 H 0.09 1.87 7.06 -51.93 -0.37 1.50 16 41 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 44 H 0.10 2.87 6.49 -52.49 -0.34 2.53 16 45 H 0.30 8.21 6.68 -40.82 -0.27 7.94 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -31.01 354.70 -8.79 -39.81 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.07 Total: 9.52 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -2.44 Total: -26.89 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.39 Total: -32.08 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.10 Total: 17.17 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.01 -8.79 -39.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758105044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.800 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds