Wall clock time and date at job start Tue Mar 31 2020 06:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47375 * 2 1 4 4 C 1.52994 * 109.47137 * 59.99587 * 3 2 1 5 5 C 1.53004 * 109.46766 * 299.99721 * 3 2 1 6 6 C 1.52996 * 109.47010 * 179.97438 * 3 2 1 7 7 N 1.46507 * 109.47103 * 179.97438 * 6 3 2 8 8 C 1.34773 * 120.00266 * 180.02562 * 7 6 3 9 9 O 1.21282 * 119.99503 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00092 * 180.02562 * 8 7 6 11 11 C 1.50707 * 109.47262 * 179.97438 * 10 8 7 12 12 C 1.37643 * 120.12639 * 265.30991 * 11 10 8 13 13 C 1.38615 * 120.24281 * 180.31829 * 12 11 10 14 14 C 1.38658 * 120.50051 * 359.66907 * 13 12 11 15 15 C 1.37593 * 120.25264 * 0.02562 * 14 13 12 16 16 C 1.40688 * 120.12508 * 84.99750 * 11 10 8 17 17 C 1.41401 * 120.24844 * 359.97438 * 16 11 10 18 18 H 1.07999 * 119.99289 * 334.28466 * 17 16 11 19 19 C 1.39937 * 120.00394 * 154.28925 * 17 16 11 20 20 N 1.30829 * 120.00181 * 334.60180 * 19 17 16 21 21 Si 1.86801 * 120.00083 * 154.60226 * 19 17 16 22 22 H 1.48505 * 109.47160 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47100 * 300.00105 * 21 19 17 24 24 H 1.48502 * 109.47051 * 60.00179 * 21 19 17 25 25 H 1.09008 * 109.47151 * 59.99876 * 1 2 3 26 26 H 1.08999 * 109.47700 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46941 * 300.00573 * 1 2 3 28 28 H 1.09001 * 109.47080 * 239.99941 * 2 1 3 29 29 H 1.08998 * 109.46872 * 119.99644 * 2 1 3 30 30 H 1.09009 * 109.46861 * 179.97438 * 4 3 2 31 31 H 1.08993 * 109.47464 * 299.99973 * 4 3 2 32 32 H 1.09003 * 109.46917 * 60.00707 * 4 3 2 33 33 H 1.09001 * 109.47500 * 299.99943 * 5 3 2 34 34 H 1.09003 * 109.47330 * 60.00431 * 5 3 2 35 35 H 1.08997 * 109.46981 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47212 * 60.00084 * 6 3 2 37 37 H 1.08991 * 109.47261 * 299.99917 * 6 3 2 38 38 H 0.97000 * 119.99705 * 0.02562 * 7 6 3 39 39 H 1.09001 * 109.46892 * 59.99768 * 10 8 7 40 40 H 1.08991 * 109.47294 * 299.99778 * 10 8 7 41 41 H 1.07998 * 119.87840 * 0.02562 * 12 11 10 42 42 H 1.07996 * 119.74749 * 179.68975 * 13 12 11 43 43 H 1.08000 * 119.87393 * 180.02562 * 14 13 12 44 44 H 1.07996 * 120.12941 * 180.02562 * 15 14 13 45 45 H 0.96998 * 119.99709 * 354.17607 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2491 5 6 1.5301 2.1637 -1.2493 6 6 3.5700 1.4424 0.0006 7 7 4.0584 2.8236 0.0000 8 6 5.3835 3.0699 -0.0001 9 8 6.1715 2.1480 0.0008 10 6 5.8858 4.4906 -0.0001 11 6 7.3929 4.4906 0.0004 12 6 8.0834 4.5881 1.1871 13 6 9.4695 4.5950 1.1899 14 6 10.1761 4.4971 0.0008 15 6 9.5067 4.3924 -1.1967 16 6 8.0994 4.3843 -1.2116 17 6 7.4008 4.2764 -2.4362 18 1 6.4016 3.8671 -2.4535 19 6 8.0042 4.6998 -3.6257 20 7 8.9416 5.6120 -3.5951 21 14 7.4713 3.9626 -5.2573 22 1 8.2574 4.5759 -6.3579 23 1 7.7059 2.4964 -5.2381 24 1 6.0266 4.2301 -5.4730 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8938 3.1913 1.2493 31 1 0.4401 2.1638 1.2491 32 1 1.8934 1.6500 2.1392 33 1 1.8934 1.6498 -2.1393 34 1 0.4400 2.1638 -1.2494 35 1 1.8930 3.1914 -1.2491 36 1 3.9337 0.9284 -0.8891 37 1 3.9329 0.9287 0.8908 38 1 3.4281 3.5609 -0.0003 39 1 5.5225 5.0045 0.8899 40 1 5.5225 5.0044 -0.8900 41 1 7.5431 4.6644 2.1192 42 1 10.0031 4.6769 2.1252 43 1 11.2560 4.5030 0.0148 44 1 10.0591 4.3158 -2.1216 45 1 9.1596 6.0555 -2.7605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758105044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:32 Heat of formation + Delta-G solvation = -69.537929 kcal Electronic energy + Delta-G solvation = -23228.262852 eV Core-core repulsion = 20015.236073 eV Total energy + Delta-G solvation = -3213.026778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.00595 -39.64087 -38.70414 -35.73681 -34.92536 -33.51516 -31.11867 -30.98282 -28.97555 -28.18350 -27.40071 -26.64485 -24.15479 -22.82524 -22.18747 -21.18369 -19.75002 -19.46051 -17.93756 -17.15379 -16.78176 -16.58049 -16.03185 -15.87706 -15.62985 -15.55631 -15.30284 -14.74491 -14.56121 -14.29895 -14.16978 -13.86425 -13.53601 -13.16227 -13.01458 -12.98145 -12.82088 -12.73819 -12.64626 -12.58605 -12.24434 -12.02006 -11.98731 -11.61076 -11.47366 -11.40811 -11.37748 -11.21611 -10.84850 -10.77985 -10.00860 -9.44316 -9.42515 -9.05406 -6.39334 0.91488 0.98960 1.46313 1.61737 1.75935 1.81111 2.30802 2.36989 2.72371 3.59406 3.68693 3.83547 3.88042 4.07775 4.29123 4.37213 4.38406 4.39387 4.49774 4.57322 4.62232 4.70787 4.71098 4.75656 4.78909 4.86474 4.97979 5.04919 5.07834 5.08053 5.15337 5.17933 5.23513 5.29069 5.33012 5.50229 5.52118 5.56464 5.58818 5.80281 5.84549 5.99159 6.05396 6.29886 6.45680 6.66030 6.87299 7.02438 7.42701 8.08775 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.004610 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.087366 B = 6072.502159 C = 7439.098940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.066 4.066 4 C -0.142 4.142 5 C -0.145 4.145 6 C 0.130 3.870 7 N -0.719 5.719 8 C 0.514 3.486 9 O -0.579 6.579 10 C -0.070 4.070 11 C -0.189 4.189 12 C -0.081 4.081 13 C -0.251 4.251 14 C -0.097 4.097 15 C -0.246 4.246 16 C 0.086 3.914 17 C -0.542 4.542 18 H 0.067 0.933 19 C 0.005 3.995 20 N -0.820 5.820 21 Si 1.106 2.894 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.252 1.252 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.411 0.589 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.458 -4.598 5.702 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.067 4.067 4 C -0.199 4.199 5 C -0.202 4.202 6 C 0.006 3.994 7 N -0.373 5.373 8 C 0.302 3.698 9 O -0.458 6.458 10 C -0.109 4.109 11 C -0.191 4.191 12 C -0.099 4.099 13 C -0.270 4.270 14 C -0.116 4.116 15 C -0.266 4.266 16 C 0.083 3.917 17 C -0.570 4.570 18 H 0.086 0.914 19 C -0.211 4.211 20 N -0.443 5.443 21 Si 0.925 3.075 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.176 1.176 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.249 0.751 39 H 0.131 0.869 40 H 0.113 0.887 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.101 0.899 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.552 -5.194 4.087 18.755 hybrid contribution 0.234 0.202 1.576 1.606 sum -17.318 -4.992 5.663 18.892 Atomic orbital electron populations 1.21848 0.94109 1.02120 1.02633 1.21508 0.97336 0.94213 1.02006 1.20752 0.91230 0.97362 0.97343 1.21932 1.02172 0.99989 0.95820 1.21956 1.02220 0.99965 0.96078 1.21377 0.94763 0.82777 1.00443 1.45939 1.06164 1.09338 1.75885 1.21116 0.82256 0.91947 0.74447 1.90660 1.56878 1.47847 1.50378 1.20275 0.93224 0.92899 1.04525 1.19521 0.93977 1.12318 0.93259 1.20812 0.94403 0.98223 0.96511 1.20715 0.94271 1.15006 0.96972 1.20899 0.98620 0.99009 0.93044 1.21154 0.94974 1.13655 0.96774 1.17779 0.91870 0.88515 0.93522 1.20542 1.03526 1.39702 0.93229 0.91438 1.28205 0.92242 0.93148 1.07482 1.70552 1.24951 1.16293 1.32541 0.83142 0.77870 0.76068 0.70465 1.19304 1.20198 1.17620 0.91961 0.92362 0.91638 0.92411 0.91919 0.92420 0.90311 0.92834 0.93436 0.90176 0.92622 0.93998 0.93031 0.75100 0.86878 0.88734 0.86297 0.86306 0.87256 0.89872 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.21 71.98 0.66 -1.11 16 2 C -0.11 -1.78 4.99 30.59 0.15 -1.63 16 3 C -0.07 -1.17 0.56 -52.18 -0.03 -1.20 16 4 C -0.14 -2.06 7.95 71.98 0.57 -1.49 16 5 C -0.15 -2.40 7.95 71.98 0.57 -1.83 16 6 C 0.13 3.43 4.56 86.38 0.39 3.83 16 7 N -0.72 -20.44 4.96 -463.07 -2.30 -22.74 16 8 C 0.51 20.28 7.46 87.66 0.65 20.94 16 9 O -0.58 -29.12 16.03 -3.04 -0.05 -29.17 16 10 C -0.07 -2.70 5.18 29.10 0.15 -2.55 16 11 C -0.19 -9.19 4.43 -19.40 -0.09 -9.28 16 12 C -0.08 -3.68 9.66 22.22 0.21 -3.46 16 13 C -0.25 -11.39 10.05 22.46 0.23 -11.16 16 14 C -0.10 -4.79 10.02 22.22 0.22 -4.57 16 15 C -0.25 -13.67 7.95 22.73 0.18 -13.49 16 16 C 0.09 4.75 5.30 -21.29 -0.11 4.64 16 17 C -0.54 -29.84 8.08 23.46 0.19 -29.65 16 18 H 0.07 3.65 6.73 -2.91 -0.02 3.63 16 19 C 0.01 0.28 4.94 85.25 0.42 0.70 16 20 N -0.82 -45.55 12.31 21.82 0.27 -45.28 16 21 Si 1.11 45.38 30.00 68.60 2.06 47.44 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 25 H 0.06 0.69 6.43 -2.38 -0.02 0.68 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.68 6.43 -2.39 -0.02 0.66 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.82 6.86 -2.38 -0.02 0.80 16 31 H 0.08 0.88 6.43 -2.39 -0.02 0.86 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.02 6.43 -2.39 -0.02 1.00 16 35 H 0.05 0.93 6.86 -2.39 -0.02 0.91 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.41 8.90 6.16 -92.71 -0.57 8.33 16 39 H 0.11 3.44 8.05 -2.39 -0.02 3.42 16 40 H 0.09 3.67 7.06 -2.39 -0.02 3.65 16 41 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 42 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 43 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 44 H 0.08 4.85 6.49 -2.91 -0.02 4.83 16 45 H 0.28 16.38 6.68 -92.71 -0.62 15.76 16 Total: -1.00 -69.80 354.70 4.92 -64.88 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.55 Total: 36.18 kcal Atomic # 6 Polarization: -55.70 SS G_CDS: 4.39 Total: -51.31 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: -2.03 Total: -68.02 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.05 Total: -29.17 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.06 Total: 47.44 kcal Total: -69.80 4.92 -64.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758105044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.661 kcal (2) G-P(sol) polarization free energy of solvation -69.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds