Wall clock time and date at job start Tue Mar 31 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47322 * 2 1 4 4 C 1.53000 * 110.27282 * 302.08502 * 3 2 1 5 5 C 1.54596 * 110.39395 * 64.23694 * 3 2 1 6 6 C 1.54935 * 102.92387 * 140.91879 * 5 3 2 7 7 N 1.48544 * 103.22453 * 322.58594 * 6 5 3 8 8 C 1.46894 * 111.00032 * 159.72495 * 7 6 5 9 9 C 1.50695 * 109.47563 * 52.60162 * 8 7 6 10 10 C 1.38309 * 119.93052 * 269.72940 * 9 8 7 11 11 C 1.38103 * 120.07033 * 179.72045 * 10 9 8 12 12 C 1.38876 * 119.92534 * 0.55077 * 11 10 9 13 13 O 1.35754 * 120.06597 * 179.74522 * 12 11 10 14 14 C 1.34834 * 117.00240 * 174.43894 * 13 12 11 15 15 H 1.08000 * 119.99834 * 5.05697 * 14 13 12 16 16 C 1.38647 * 120.00036 * 185.05818 * 14 13 12 17 17 N 1.31556 * 120.00173 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99816 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47210 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47381 * 119.99837 * 18 16 14 21 21 H 1.48498 * 109.47338 * 239.99920 * 18 16 14 22 22 C 1.38879 * 119.86811 * 359.72293 * 12 11 10 23 23 C 1.38100 * 119.92794 * 0.02562 * 22 12 11 24 24 C 1.47899 * 105.82162 * 39.20286 * 7 6 5 25 25 H 1.08994 * 109.47328 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46718 * 300.00052 * 1 2 3 27 27 H 1.08999 * 109.47221 * 59.99903 * 1 2 3 28 28 H 1.09009 * 109.46971 * 239.99472 * 2 1 3 29 29 H 1.09001 * 109.46712 * 120.00144 * 2 1 3 30 30 H 1.08990 * 109.47823 * 297.91504 * 4 3 2 31 31 H 1.09003 * 109.46498 * 57.91791 * 4 3 2 32 32 H 1.09007 * 109.46952 * 177.91087 * 4 3 2 33 33 H 1.09004 * 110.71734 * 259.27393 * 5 3 2 34 34 H 1.08990 * 110.72250 * 22.37811 * 5 3 2 35 35 H 1.08999 * 110.66869 * 204.15255 * 6 5 3 36 36 H 1.08994 * 110.67346 * 81.01422 * 6 5 3 37 37 H 1.08999 * 109.47153 * 292.60073 * 8 7 6 38 38 H 1.09004 * 109.47166 * 172.60301 * 8 7 6 39 39 H 1.07996 * 119.96320 * 359.97438 * 10 9 8 40 40 H 1.07998 * 120.03412 * 180.26813 * 11 10 9 41 41 H 0.97001 * 119.99771 * 179.97438 * 17 16 14 42 42 H 1.08004 * 120.03604 * 180.02562 * 22 12 11 43 43 H 1.07997 * 119.96284 * 180.02562 * 23 22 12 44 44 H 1.09006 * 109.91258 * 94.02563 * 24 7 6 45 45 H 1.08996 * 109.92267 * 215.31582 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4980 2.1964 -1.2160 5 6 1.6258 2.1603 1.3050 6 6 2.8750 3.0121 1.6434 7 7 4.0041 2.1304 1.2507 8 6 5.2322 2.9089 1.0425 9 6 5.4978 3.7625 2.2557 10 6 4.9795 5.0429 2.3255 11 6 5.2162 5.8255 3.4385 12 6 5.9852 5.3297 4.4832 13 8 6.2240 6.0985 5.5764 14 6 6.8789 5.5177 6.6020 15 1 7.2598 4.5124 6.4993 16 6 7.0634 6.2112 7.7883 17 7 6.5998 7.4361 7.9131 18 14 7.9713 5.4069 9.2088 19 1 8.3892 4.0369 8.8169 20 1 9.1714 6.2127 9.5490 21 1 7.0747 5.3315 10.3902 22 6 6.5090 4.0457 4.4077 23 6 6.2643 3.2661 3.2944 24 6 3.5798 1.4648 0.0000 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8606 1.7231 -2.1284 31 1 0.4083 2.1720 -1.2024 32 1 1.8388 3.2313 -1.1834 33 1 0.7583 2.7982 1.1356 34 1 1.4229 1.4375 2.0951 35 1 2.9125 3.2331 2.7101 36 1 2.8837 3.9317 1.0584 37 1 5.1133 3.5481 0.1676 38 1 6.0705 2.2301 0.8853 39 1 4.3856 5.4295 1.5106 40 1 4.8076 6.8236 3.4943 41 1 6.7286 7.9211 8.7432 42 1 7.1070 3.6572 5.2189 43 1 6.6710 2.2674 3.2352 44 1 3.9430 2.0262 -0.8609 45 1 3.9661 0.4459 -0.0280 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758742147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:25 Heat of formation + Delta-G solvation = -11.809534 kcal Electronic energy + Delta-G solvation = -22827.043324 eV Core-core repulsion = 19616.519836 eV Total energy + Delta-G solvation = -3210.523487 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.90578 -38.87059 -36.80049 -34.84234 -32.31955 -31.09480 -30.16662 -29.41554 -29.12714 -26.55293 -25.49052 -24.20596 -23.05357 -22.01567 -21.22363 -20.14802 -18.78988 -17.97207 -16.93298 -15.80731 -15.60227 -14.88953 -14.66498 -14.59217 -14.55251 -14.11448 -13.82556 -13.60194 -13.46429 -12.96794 -12.89723 -12.69377 -12.49579 -12.27569 -12.16731 -11.84465 -11.73803 -11.61262 -11.32616 -11.15222 -11.09127 -10.88314 -10.69341 -10.57327 -10.54085 -10.41638 -10.39751 -10.33322 -9.30609 -8.82647 -8.25617 -8.14641 -7.14960 -6.44131 -4.02731 2.23708 2.31314 3.13034 3.14959 3.20447 3.97773 4.16389 4.39607 4.54673 4.62028 4.73295 5.06073 5.10447 5.15380 5.21555 5.27547 5.29005 5.32400 5.40108 5.42691 5.47397 5.55487 5.65941 5.74175 5.75717 5.76950 5.84385 5.86239 5.91912 5.95602 5.99943 6.05087 6.18308 6.22819 6.24825 6.30020 6.45338 6.71945 6.91221 7.01527 7.08889 7.20656 7.28604 7.43861 7.46970 7.84761 8.01447 9.01928 9.72258 10.74088 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029932 B = 0.002964 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.241558 B = 9443.513045 C = 9580.622801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.072 4.072 4 C -0.140 4.140 5 C -0.115 4.115 6 C 0.042 3.958 7 N -0.511 5.511 8 C 0.105 3.895 9 C -0.183 4.183 10 C -0.068 4.068 11 C -0.194 4.194 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.390 4.390 15 H 0.093 0.907 16 C 0.038 3.962 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.235 4.235 23 C -0.050 4.050 24 C 0.042 3.958 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.042 0.958 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 -11.937 -15.617 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C -0.073 4.073 4 C -0.197 4.197 5 C -0.153 4.153 6 C -0.086 4.086 7 N -0.235 5.235 8 C -0.022 4.022 9 C -0.184 4.184 10 C -0.086 4.086 11 C -0.213 4.213 12 C 0.102 3.898 13 O -0.082 6.082 14 C -0.467 4.467 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.201 1.201 22 C -0.254 4.254 23 C -0.069 4.069 24 C -0.086 4.086 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.123 0.877 40 H 0.133 0.867 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.125 0.875 44 H 0.060 0.940 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.596 -11.897 -14.980 20.972 hybrid contribution 0.394 0.224 0.098 0.464 sum -8.202 -11.673 -14.882 20.615 Atomic orbital electron populations 1.21851 0.96019 1.01302 1.01980 1.21562 0.95738 0.95215 1.01955 1.21431 0.94617 0.95639 0.95589 1.21953 1.01060 0.99805 0.96917 1.22639 0.97409 0.98730 0.96501 1.23176 0.89385 0.94199 1.01801 1.64905 1.03075 1.27587 1.27892 1.20972 0.92510 0.94224 0.94512 1.19083 1.06423 0.95263 0.97648 1.20482 0.98277 0.93436 0.96437 1.20159 1.05353 1.01215 0.94565 1.19387 0.92053 0.89870 0.88488 1.83977 1.66357 1.36572 1.21327 1.21380 1.34003 1.00605 0.90679 0.89005 1.25287 0.97573 0.95810 0.97882 1.70050 1.43012 1.10078 1.26722 0.85649 0.78784 0.79002 0.80018 1.19070 1.20166 1.20145 1.21164 1.07918 0.95802 1.00551 1.20570 0.96043 0.97807 0.92453 1.23020 0.93927 0.99976 0.91657 0.93079 0.92516 0.92630 0.92270 0.91518 0.92768 0.92169 0.92847 0.91393 0.90783 0.89672 0.93975 0.94991 0.90879 0.87653 0.86672 0.92098 0.85609 0.87474 0.94004 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.34 37.16 0.35 -0.81 16 2 C -0.11 -0.90 4.67 -26.73 -0.12 -1.03 16 3 C -0.07 -0.68 0.69 -153.15 -0.11 -0.79 16 4 C -0.14 -1.17 7.86 37.16 0.29 -0.88 16 5 C -0.11 -1.23 5.20 -24.87 -0.13 -1.36 16 6 C 0.04 0.56 4.97 -1.89 -0.01 0.55 16 7 N -0.51 -6.89 5.39 -231.89 -1.25 -8.13 16 8 C 0.10 1.49 5.18 -4.98 -0.03 1.46 16 9 C -0.18 -3.16 4.59 -104.58 -0.48 -3.64 16 10 C -0.07 -1.21 8.34 -39.60 -0.33 -1.54 16 11 C -0.19 -4.11 9.99 -39.40 -0.39 -4.51 16 12 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 13 O -0.18 -5.15 9.76 0.03 0.00 -5.15 16 14 C -0.39 -10.99 9.49 30.88 0.29 -10.70 16 15 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 18 Si 0.94 20.68 29.55 -169.99 -5.02 15.65 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 C -0.24 -5.18 9.17 -39.39 -0.36 -5.54 16 23 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 24 C 0.04 0.46 6.03 -2.75 -0.02 0.45 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.44 7.36 -51.93 -0.38 0.06 16 27 H 0.05 0.39 6.41 -51.93 -0.33 0.05 16 28 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.46 6.36 -51.93 -0.33 0.13 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.66 7.85 -51.93 -0.41 0.26 16 34 H 0.07 0.82 7.78 -51.93 -0.40 0.42 16 35 H 0.08 1.32 7.74 -51.93 -0.40 0.92 16 36 H 0.04 0.55 7.10 -51.93 -0.37 0.18 16 37 H 0.03 0.43 7.75 -51.93 -0.40 0.03 16 38 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 39 H 0.11 1.62 7.40 -52.49 -0.39 1.23 16 40 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.13 2.79 5.64 -52.48 -0.30 2.50 16 43 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 44 H 0.04 0.44 7.11 -51.93 -0.37 0.08 16 45 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -29.84 351.64 -9.27 -39.11 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.27 Total: 3.09 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -1.79 Total: -25.15 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: -0.49 Total: -32.86 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.84 -9.27 -39.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758742147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.302 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds