Wall clock time and date at job start Tue Mar 31 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47322 * 2 1 4 4 C 1.53000 * 110.27282 * 302.08502 * 3 2 1 5 5 C 1.54596 * 110.39395 * 64.23694 * 3 2 1 6 6 C 1.54935 * 102.92387 * 140.91879 * 5 3 2 7 7 N 1.48544 * 103.22453 * 322.58594 * 6 5 3 8 8 C 1.46894 * 111.00032 * 159.72495 * 7 6 5 9 9 C 1.50695 * 109.47563 * 52.60162 * 8 7 6 10 10 C 1.38309 * 119.93052 * 269.72940 * 9 8 7 11 11 C 1.38103 * 120.07033 * 179.72045 * 10 9 8 12 12 C 1.38876 * 119.92534 * 0.55077 * 11 10 9 13 13 O 1.35754 * 120.06597 * 179.74522 * 12 11 10 14 14 C 1.34834 * 117.00240 * 174.43894 * 13 12 11 15 15 H 1.08000 * 119.99834 * 5.05697 * 14 13 12 16 16 C 1.38647 * 120.00036 * 185.05818 * 14 13 12 17 17 N 1.31556 * 120.00173 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99816 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47210 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47381 * 119.99837 * 18 16 14 21 21 H 1.48498 * 109.47338 * 239.99920 * 18 16 14 22 22 C 1.38879 * 119.86811 * 359.72293 * 12 11 10 23 23 C 1.38100 * 119.92794 * 0.02562 * 22 12 11 24 24 C 1.47899 * 105.82162 * 39.20286 * 7 6 5 25 25 H 1.08994 * 109.47328 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46718 * 300.00052 * 1 2 3 27 27 H 1.08999 * 109.47221 * 59.99903 * 1 2 3 28 28 H 1.09009 * 109.46971 * 239.99472 * 2 1 3 29 29 H 1.09001 * 109.46712 * 120.00144 * 2 1 3 30 30 H 1.08990 * 109.47823 * 297.91504 * 4 3 2 31 31 H 1.09003 * 109.46498 * 57.91791 * 4 3 2 32 32 H 1.09007 * 109.46952 * 177.91087 * 4 3 2 33 33 H 1.09004 * 110.71734 * 259.27393 * 5 3 2 34 34 H 1.08990 * 110.72250 * 22.37811 * 5 3 2 35 35 H 1.08999 * 110.66869 * 204.15255 * 6 5 3 36 36 H 1.08994 * 110.67346 * 81.01422 * 6 5 3 37 37 H 1.08999 * 109.47153 * 292.60073 * 8 7 6 38 38 H 1.09004 * 109.47166 * 172.60301 * 8 7 6 39 39 H 1.07996 * 119.96320 * 359.97438 * 10 9 8 40 40 H 1.07998 * 120.03412 * 180.26813 * 11 10 9 41 41 H 0.97001 * 119.99771 * 179.97438 * 17 16 14 42 42 H 1.08004 * 120.03604 * 180.02562 * 22 12 11 43 43 H 1.07997 * 119.96284 * 180.02562 * 23 22 12 44 44 H 1.09006 * 109.91258 * 94.02563 * 24 7 6 45 45 H 1.08996 * 109.92267 * 215.31582 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4980 2.1964 -1.2160 5 6 1.6258 2.1603 1.3050 6 6 2.8750 3.0121 1.6434 7 7 4.0041 2.1304 1.2507 8 6 5.2322 2.9089 1.0425 9 6 5.4978 3.7625 2.2557 10 6 4.9795 5.0429 2.3255 11 6 5.2162 5.8255 3.4385 12 6 5.9852 5.3297 4.4832 13 8 6.2240 6.0985 5.5764 14 6 6.8789 5.5177 6.6020 15 1 7.2598 4.5124 6.4993 16 6 7.0634 6.2112 7.7883 17 7 6.5998 7.4361 7.9131 18 14 7.9713 5.4069 9.2088 19 1 8.3892 4.0369 8.8169 20 1 9.1714 6.2127 9.5490 21 1 7.0747 5.3315 10.3902 22 6 6.5090 4.0457 4.4077 23 6 6.2643 3.2661 3.2944 24 6 3.5798 1.4648 0.0000 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8606 1.7231 -2.1284 31 1 0.4083 2.1720 -1.2024 32 1 1.8388 3.2313 -1.1834 33 1 0.7583 2.7982 1.1356 34 1 1.4229 1.4375 2.0951 35 1 2.9125 3.2331 2.7101 36 1 2.8837 3.9317 1.0584 37 1 5.1133 3.5481 0.1676 38 1 6.0705 2.2301 0.8853 39 1 4.3856 5.4295 1.5106 40 1 4.8076 6.8236 3.4943 41 1 6.7286 7.9211 8.7432 42 1 7.1070 3.6572 5.2189 43 1 6.6710 2.2674 3.2352 44 1 3.9430 2.0262 -0.8609 45 1 3.9661 0.4459 -0.0280 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758742147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:24 Heat of formation + Delta-G solvation = -29.219968 kcal Electronic energy + Delta-G solvation = -22827.798297 eV Core-core repulsion = 19616.519836 eV Total energy + Delta-G solvation = -3211.278460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07800 -40.38378 -38.41439 -35.91433 -34.29192 -32.25512 -31.77421 -30.39849 -30.16770 -27.77061 -27.11684 -25.46099 -23.90460 -23.54671 -22.57358 -21.47146 -19.85665 -19.58496 -18.81938 -16.77215 -16.74579 -16.40762 -16.30096 -15.80604 -15.54125 -15.39315 -15.19775 -15.11570 -14.82819 -14.39915 -14.07052 -13.84532 -13.65396 -13.54084 -13.22097 -12.92751 -12.88505 -12.74259 -12.58756 -12.49506 -12.39173 -12.11587 -12.02716 -11.96091 -11.80232 -11.37064 -11.23815 -11.19816 -11.17246 -10.79886 -9.77814 -9.32039 -8.87874 -8.47904 -6.15900 0.59029 0.66842 1.34680 1.42796 1.53071 2.17283 2.76454 3.07946 3.36104 3.50993 3.59863 3.75423 3.91461 4.03435 4.05861 4.18932 4.33685 4.35177 4.43828 4.48716 4.53825 4.58227 4.67768 4.73502 4.75168 4.81511 4.82590 4.89535 4.94373 5.07480 5.07613 5.14665 5.15796 5.20954 5.23255 5.27462 5.29784 5.34977 5.48311 5.54851 5.61687 5.71136 5.80287 6.02465 6.04850 6.15107 6.24382 6.97129 7.77832 8.75668 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029932 B = 0.002964 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.241558 B = 9443.513045 C = 9580.622801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 C -0.067 4.067 4 C -0.137 4.137 5 C -0.111 4.111 6 C 0.040 3.960 7 N -0.524 5.524 8 C 0.107 3.893 9 C -0.157 4.157 10 C -0.057 4.057 11 C -0.203 4.203 12 C 0.115 3.885 13 O -0.233 6.233 14 C -0.412 4.412 15 H 0.101 0.899 16 C -0.023 4.023 17 N -0.921 5.921 18 Si 1.019 2.981 19 H -0.252 1.252 20 H -0.267 1.267 21 H -0.268 1.268 22 C -0.243 4.243 23 C -0.051 4.051 24 C 0.042 3.958 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.140 0.860 40 H 0.112 0.888 41 H 0.273 0.727 42 H 0.117 0.883 43 H 0.135 0.865 44 H 0.051 0.949 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 -14.457 -18.138 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 C -0.068 4.068 4 C -0.194 4.194 5 C -0.149 4.149 6 C -0.088 4.088 7 N -0.248 5.248 8 C -0.020 4.020 9 C -0.157 4.157 10 C -0.076 4.076 11 C -0.223 4.223 12 C 0.065 3.935 13 O -0.139 6.139 14 C -0.488 4.488 15 H 0.118 0.882 16 C -0.220 4.220 17 N -0.560 5.560 18 Si 0.838 3.162 19 H -0.175 1.175 20 H -0.192 1.192 21 H -0.193 1.193 22 C -0.262 4.262 23 C -0.070 4.070 24 C -0.085 4.085 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.157 0.843 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.153 0.847 44 H 0.069 0.931 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.080 -14.454 -17.561 24.490 hybrid contribution 0.413 0.867 0.551 1.107 sum -8.667 -13.587 -17.010 23.432 Atomic orbital electron populations 1.21838 0.95316 1.01797 1.02059 1.21533 0.96334 0.94402 1.01935 1.21412 0.93743 0.96307 0.95294 1.21932 1.01606 0.99300 0.96610 1.22606 0.96675 0.98463 0.97128 1.23127 0.90737 0.94937 1.00008 1.64856 1.02805 1.27392 1.29773 1.21004 0.93627 0.94419 0.92971 1.19567 1.03179 0.95068 0.97932 1.20826 0.97577 0.93263 0.95927 1.20405 1.05101 1.01752 0.95006 1.19912 0.93985 0.91104 0.88488 1.83941 1.68711 1.38439 1.22848 1.21849 1.34433 1.01218 0.91347 0.88221 1.26584 0.98429 0.96377 1.00651 1.70190 1.45763 1.12115 1.27896 0.84530 0.77428 0.78469 0.75783 1.17533 1.19233 1.19316 1.21244 1.07931 0.95413 1.01626 1.20889 0.95935 0.98594 0.91555 1.23090 0.94871 0.99989 0.90552 0.92467 0.93133 0.91826 0.91209 0.92621 0.91723 0.91353 0.93381 0.90361 0.91549 0.92638 0.93578 0.93258 0.89427 0.84257 0.86962 0.91831 0.86518 0.84696 0.93052 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.34 71.98 0.67 -1.21 16 2 C -0.10 -1.46 4.67 30.59 0.14 -1.31 16 3 C -0.07 -1.06 0.69 -51.30 -0.04 -1.09 16 4 C -0.14 -1.79 7.86 71.98 0.57 -1.23 16 5 C -0.11 -2.14 5.20 31.80 0.17 -1.97 16 6 C 0.04 0.96 4.97 86.65 0.43 1.40 16 7 N -0.52 -12.51 5.39 -887.58 -4.78 -17.29 16 8 C 0.11 2.62 5.18 85.56 0.44 3.06 16 9 C -0.16 -5.02 4.59 -19.83 -0.09 -5.11 16 10 C -0.06 -1.96 8.34 22.25 0.19 -1.77 16 11 C -0.20 -8.82 9.99 22.39 0.22 -8.60 16 12 C 0.12 5.88 6.65 22.58 0.15 6.03 16 13 O -0.23 -14.28 9.76 -22.82 -0.22 -14.50 16 14 C -0.41 -24.46 9.49 67.92 0.64 -23.82 16 15 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 16 C -0.02 -1.33 5.49 84.83 0.47 -0.87 16 17 N -0.92 -57.26 13.67 21.61 0.30 -56.96 16 18 Si 1.02 43.54 29.55 68.60 2.03 45.56 16 19 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 C -0.24 -10.91 9.17 22.39 0.21 -10.71 16 23 C -0.05 -1.85 9.69 22.25 0.22 -1.63 16 24 C 0.04 0.77 6.03 86.45 0.52 1.29 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.68 7.36 -2.38 -0.02 0.66 16 27 H 0.06 0.68 6.41 -2.39 -0.02 0.67 16 28 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.05 0.91 8.11 -2.39 -0.02 0.89 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.79 6.36 -2.39 -0.02 0.78 16 32 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.08 1.35 7.85 -2.38 -0.02 1.33 16 34 H 0.07 1.38 7.78 -2.39 -0.02 1.36 16 35 H 0.06 1.67 7.74 -2.39 -0.02 1.65 16 36 H 0.05 1.08 7.10 -2.39 -0.02 1.06 16 37 H 0.05 1.08 7.75 -2.39 -0.02 1.06 16 38 H 0.09 1.97 8.08 -2.38 -0.02 1.95 16 39 H 0.14 3.83 7.40 -2.91 -0.02 3.80 16 40 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.12 5.36 5.64 -2.91 -0.02 5.34 16 43 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 44 H 0.05 0.86 7.11 -2.38 -0.02 0.85 16 45 H 0.08 1.41 7.68 -2.39 -0.02 1.39 16 Total: -1.00 -69.03 351.64 3.18 -65.85 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.96 Total: 24.88 kcal Atomic # 6 Polarization: -52.44 SS G_CDS: 4.91 Total: -47.54 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -4.49 Total: -74.26 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.22 Total: -14.50 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -69.03 3.18 -65.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758742147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.632 kcal (2) G-P(sol) polarization free energy of solvation -69.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds