Wall clock time and date at job start Tue Mar 31 2020 06:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46990 * 2 1 4 4 C 1.52998 * 109.47410 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47375 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47010 * 179.97438 * 5 4 3 7 7 N 1.46507 * 109.47103 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00266 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99503 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00092 * 180.02562 * 8 7 6 11 11 C 1.50707 * 109.47262 * 179.97438 * 10 8 7 12 12 C 1.37643 * 120.12639 * 265.30991 * 11 10 8 13 13 C 1.38615 * 120.24281 * 180.31829 * 12 11 10 14 14 C 1.38658 * 120.50051 * 359.66907 * 13 12 11 15 15 C 1.37593 * 120.25264 * 0.02562 * 14 13 12 16 16 C 1.40688 * 120.12508 * 84.99750 * 11 10 8 17 17 C 1.41401 * 120.24844 * 359.97438 * 16 11 10 18 18 H 1.07999 * 119.99289 * 334.28466 * 17 16 11 19 19 C 1.39937 * 120.00394 * 154.28925 * 17 16 11 20 20 N 1.30829 * 120.00181 * 334.60180 * 19 17 16 21 21 Si 1.86801 * 120.00083 * 154.60226 * 19 17 16 22 22 H 1.48505 * 109.47160 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47100 * 300.00105 * 21 19 17 24 24 H 1.48502 * 109.47051 * 60.00179 * 21 19 17 25 25 H 1.08998 * 109.47155 * 60.00049 * 1 2 3 26 26 H 1.08997 * 109.46765 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47218 * 299.99495 * 1 2 3 28 28 H 1.09001 * 109.47218 * 240.00505 * 2 1 3 29 29 H 1.08998 * 109.47155 * 119.99951 * 2 1 3 30 30 H 1.09003 * 109.47217 * 60.00076 * 3 2 1 31 31 H 1.09008 * 109.47384 * 300.00462 * 3 2 1 32 32 H 1.09001 * 109.47080 * 60.00332 * 4 3 2 33 33 H 1.08998 * 109.46872 * 300.00036 * 4 3 2 34 34 H 1.08992 * 109.47153 * 59.99702 * 5 4 3 35 35 H 1.09003 * 109.46640 * 300.00124 * 5 4 3 36 36 H 1.09001 * 109.47212 * 60.00084 * 6 5 4 37 37 H 1.08991 * 109.47261 * 299.99917 * 6 5 4 38 38 H 0.97000 * 119.99705 * 0.02562 * 7 6 5 39 39 H 1.09001 * 109.46892 * 59.99768 * 10 8 7 40 40 H 1.08991 * 109.47294 * 299.99778 * 10 8 7 41 41 H 1.07998 * 119.87840 * 0.02562 * 12 11 10 42 42 H 1.07996 * 119.74749 * 179.68975 * 13 12 11 43 43 H 1.08000 * 119.87393 * 180.02562 * 14 13 12 44 44 H 1.07996 * 120.12941 * 180.02562 * 15 14 13 45 45 H 0.96998 * 119.99709 * 354.17607 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6099 2.8852 0.0000 7 7 6.0983 4.2664 0.0000 8 6 7.4233 4.5128 -0.0005 9 8 8.2114 3.5909 -0.0005 10 6 7.9255 5.9336 0.0001 11 6 9.4326 5.9337 -0.0001 12 6 10.1235 6.0305 1.1864 13 6 11.5097 6.0375 1.1886 14 6 12.2158 5.9403 -0.0008 15 6 11.5459 5.8363 -1.1981 16 6 10.1386 5.8281 -1.2124 17 6 9.4395 5.7209 -2.4368 18 1 8.4403 5.3116 -2.4539 19 6 10.0424 6.1451 -3.6263 20 7 10.9797 7.0573 -3.5956 21 14 9.5088 5.4088 -5.2581 22 1 10.2944 6.0228 -6.3586 23 1 9.7435 3.9426 -5.2399 24 1 8.0640 5.6763 -5.4730 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 0.9290 -0.8909 33 1 3.9337 0.9287 0.8891 34 1 3.7170 3.3984 0.8903 35 1 3.7162 3.3994 -0.8896 36 1 5.9733 2.3717 -0.8902 37 1 5.9733 2.3710 0.8897 38 1 5.4679 5.0037 0.0004 39 1 7.5626 6.4468 0.8905 40 1 7.5618 6.4479 -0.8894 41 1 9.5837 6.1062 2.1188 42 1 12.0437 6.1189 2.1238 43 1 13.2957 5.9463 0.0127 44 1 12.0979 5.7603 -2.1232 45 1 11.1981 7.5003 -2.7607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776728703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:36 Heat of formation + Delta-G solvation = -65.514662 kcal Electronic energy + Delta-G solvation = -22174.126292 eV Core-core repulsion = 18961.273976 eV Total energy + Delta-G solvation = -3212.852317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.24856 -37.59422 -36.73600 -34.67654 -33.80058 -32.31117 -31.59741 -29.16775 -28.43881 -26.59705 -24.89784 -23.77853 -21.44568 -21.33847 -20.89093 -20.51194 -19.37827 -17.68823 -16.29201 -16.28664 -15.71589 -15.27260 -14.82853 -14.61070 -14.16657 -14.07333 -13.88578 -13.57224 -13.35446 -13.00993 -12.85405 -12.38808 -12.25716 -11.97935 -11.79108 -11.72680 -11.68490 -11.19197 -11.18306 -11.13885 -10.94811 -10.85736 -10.77948 -10.72152 -10.42344 -10.35447 -9.60209 -9.33445 -9.15005 -8.91155 -8.67020 -7.50499 -7.45626 -7.07652 -4.37093 2.80247 2.89889 3.18347 3.32178 3.37149 3.40730 3.67297 4.06040 4.48863 4.61741 4.63895 4.74330 4.89106 5.00893 5.14083 5.24397 5.40756 5.44450 5.52624 5.56564 5.61854 5.68225 5.73139 5.78364 5.86983 5.90931 5.96522 6.02409 6.10732 6.14276 6.21017 6.22923 6.37995 6.41232 6.73607 6.83598 7.05161 7.26180 7.47235 7.72741 7.87722 7.91136 7.97557 8.01520 8.26142 8.40021 8.84012 8.89840 8.97778 10.11743 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016055 B = 0.003306 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.592241 B = 8467.877530 C = 9837.501662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.118 4.118 5 C -0.130 4.130 6 C 0.120 3.880 7 N -0.747 5.747 8 C 0.513 3.487 9 O -0.522 6.522 10 C -0.070 4.070 11 C -0.184 4.184 12 C -0.069 4.069 13 C -0.254 4.254 14 C -0.086 4.086 15 C -0.216 4.216 16 C 0.116 3.884 17 C -0.516 4.516 18 H 0.072 0.928 19 C 0.040 3.960 20 N -0.799 5.799 21 Si 1.060 2.940 22 H -0.274 1.274 23 H -0.275 1.275 24 H -0.277 1.277 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.395 0.605 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.147 -6.465 4.622 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.156 4.156 5 C -0.168 4.168 6 C -0.004 4.004 7 N -0.401 5.401 8 C 0.300 3.700 9 O -0.396 6.396 10 C -0.110 4.110 11 C -0.186 4.186 12 C -0.088 4.088 13 C -0.273 4.273 14 C -0.105 4.105 15 C -0.235 4.235 16 C 0.113 3.887 17 C -0.544 4.544 18 H 0.090 0.910 19 C -0.182 4.182 20 N -0.423 5.423 21 Si 0.884 3.116 22 H -0.199 1.199 23 H -0.201 1.201 24 H -0.203 1.203 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.228 0.772 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.122 0.878 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.179 -7.098 2.984 17.918 hybrid contribution -0.597 0.257 1.745 1.862 sum -16.776 -6.840 4.729 18.724 Atomic orbital electron populations 1.21782 0.96022 1.01499 1.01756 1.21547 0.95729 0.97050 1.02089 1.21618 0.95292 0.96713 1.02068 1.21521 0.95307 0.96181 1.02586 1.21795 0.94702 0.97707 1.02556 1.21241 0.93018 0.84142 1.02020 1.46144 1.07658 1.07924 1.78379 1.21201 0.81098 0.92744 0.74911 1.90679 1.55110 1.46547 1.47258 1.20246 0.95747 0.92256 1.02734 1.19027 0.91477 1.14348 0.93754 1.20356 0.93998 0.98949 0.95457 1.20261 0.93753 1.17056 0.96214 1.20599 0.97260 0.99350 0.93291 1.21136 0.94499 1.11330 0.96574 1.17399 0.91458 0.87718 0.92127 1.20434 1.03316 1.38322 0.92376 0.91007 1.26927 0.92946 0.93806 1.04483 1.70450 1.23392 1.14936 1.33511 0.83710 0.76748 0.77077 0.74033 1.19896 1.20053 1.20262 0.92780 0.92889 0.92822 0.91992 0.92055 0.92045 0.91967 0.91596 0.91722 0.91515 0.91344 0.91912 0.92137 0.77180 0.90689 0.88692 0.89630 0.89469 0.89401 0.87764 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.13 -0.88 5.93 -26.73 -0.16 -1.04 16 3 C -0.12 -0.88 5.21 -26.73 -0.14 -1.02 16 4 C -0.12 -1.00 5.21 -26.73 -0.14 -1.13 16 5 C -0.13 -1.21 5.33 -26.73 -0.14 -1.35 16 6 C 0.12 1.59 5.67 -4.04 -0.02 1.57 16 7 N -0.75 -11.12 5.56 -60.30 -0.33 -11.46 16 8 C 0.51 10.31 7.46 -10.99 -0.08 10.23 16 9 O -0.52 -13.00 16.03 5.56 0.09 -12.91 16 10 C -0.07 -1.40 5.18 -29.03 -0.15 -1.55 16 11 C -0.18 -4.52 4.43 -103.91 -0.46 -4.98 16 12 C -0.07 -1.62 9.66 -39.66 -0.38 -2.01 16 13 C -0.25 -5.97 10.05 -39.29 -0.39 -6.36 16 14 C -0.09 -2.12 10.02 -39.66 -0.40 -2.52 16 15 C -0.22 -5.80 7.95 -38.87 -0.31 -6.11 16 16 C 0.12 3.14 5.30 -106.82 -0.57 2.57 16 17 C -0.52 -13.83 8.08 -37.74 -0.30 -14.13 16 18 H 0.07 1.90 6.73 -52.49 -0.35 1.54 16 19 C 0.04 1.03 4.94 -17.34 -0.09 0.95 16 20 N -0.80 -21.44 12.31 55.55 0.68 -20.76 16 21 Si 1.06 22.26 30.00 -169.99 -5.10 17.16 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.40 4.57 8.47 -40.82 -0.35 4.22 16 39 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 40 H 0.09 1.87 7.06 -51.93 -0.37 1.51 16 41 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 43 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 44 H 0.10 2.87 6.49 -52.49 -0.34 2.53 16 45 H 0.30 8.21 6.68 -40.82 -0.27 7.94 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -31.30 369.09 -10.13 -41.42 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.66 Total: 8.47 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -3.37 Total: -27.48 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.35 Total: -32.21 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.10 Total: 17.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.30 -10.13 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776728703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.092 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds