Wall clock time and date at job start Tue Mar 31 2020 06:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46990 * 2 1 4 4 C 1.52998 * 109.47410 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47375 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47010 * 179.97438 * 5 4 3 7 7 N 1.46507 * 109.47103 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00266 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99503 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00092 * 180.02562 * 8 7 6 11 11 C 1.50707 * 109.47262 * 179.97438 * 10 8 7 12 12 C 1.37643 * 120.12639 * 265.30991 * 11 10 8 13 13 C 1.38615 * 120.24281 * 180.31829 * 12 11 10 14 14 C 1.38658 * 120.50051 * 359.66907 * 13 12 11 15 15 C 1.37593 * 120.25264 * 0.02562 * 14 13 12 16 16 C 1.40688 * 120.12508 * 84.99750 * 11 10 8 17 17 C 1.41401 * 120.24844 * 359.97438 * 16 11 10 18 18 H 1.07999 * 119.99289 * 334.28466 * 17 16 11 19 19 C 1.39937 * 120.00394 * 154.28925 * 17 16 11 20 20 N 1.30829 * 120.00181 * 334.60180 * 19 17 16 21 21 Si 1.86801 * 120.00083 * 154.60226 * 19 17 16 22 22 H 1.48505 * 109.47160 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47100 * 300.00105 * 21 19 17 24 24 H 1.48502 * 109.47051 * 60.00179 * 21 19 17 25 25 H 1.08998 * 109.47155 * 60.00049 * 1 2 3 26 26 H 1.08997 * 109.46765 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47218 * 299.99495 * 1 2 3 28 28 H 1.09001 * 109.47218 * 240.00505 * 2 1 3 29 29 H 1.08998 * 109.47155 * 119.99951 * 2 1 3 30 30 H 1.09003 * 109.47217 * 60.00076 * 3 2 1 31 31 H 1.09008 * 109.47384 * 300.00462 * 3 2 1 32 32 H 1.09001 * 109.47080 * 60.00332 * 4 3 2 33 33 H 1.08998 * 109.46872 * 300.00036 * 4 3 2 34 34 H 1.08992 * 109.47153 * 59.99702 * 5 4 3 35 35 H 1.09003 * 109.46640 * 300.00124 * 5 4 3 36 36 H 1.09001 * 109.47212 * 60.00084 * 6 5 4 37 37 H 1.08991 * 109.47261 * 299.99917 * 6 5 4 38 38 H 0.97000 * 119.99705 * 0.02562 * 7 6 5 39 39 H 1.09001 * 109.46892 * 59.99768 * 10 8 7 40 40 H 1.08991 * 109.47294 * 299.99778 * 10 8 7 41 41 H 1.07998 * 119.87840 * 0.02562 * 12 11 10 42 42 H 1.07996 * 119.74749 * 179.68975 * 13 12 11 43 43 H 1.08000 * 119.87393 * 180.02562 * 14 13 12 44 44 H 1.07996 * 120.12941 * 180.02562 * 15 14 13 45 45 H 0.96998 * 119.99709 * 354.17607 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6099 2.8852 0.0000 7 7 6.0983 4.2664 0.0000 8 6 7.4233 4.5128 -0.0005 9 8 8.2114 3.5909 -0.0005 10 6 7.9255 5.9336 0.0001 11 6 9.4326 5.9337 -0.0001 12 6 10.1235 6.0305 1.1864 13 6 11.5097 6.0375 1.1886 14 6 12.2158 5.9403 -0.0008 15 6 11.5459 5.8363 -1.1981 16 6 10.1386 5.8281 -1.2124 17 6 9.4395 5.7209 -2.4368 18 1 8.4403 5.3116 -2.4539 19 6 10.0424 6.1451 -3.6263 20 7 10.9797 7.0573 -3.5956 21 14 9.5088 5.4088 -5.2581 22 1 10.2944 6.0228 -6.3586 23 1 9.7435 3.9426 -5.2399 24 1 8.0640 5.6763 -5.4730 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 0.9290 -0.8909 33 1 3.9337 0.9287 0.8891 34 1 3.7170 3.3984 0.8903 35 1 3.7162 3.3994 -0.8896 36 1 5.9733 2.3717 -0.8902 37 1 5.9733 2.3710 0.8897 38 1 5.4679 5.0037 0.0004 39 1 7.5626 6.4468 0.8905 40 1 7.5618 6.4479 -0.8894 41 1 9.5837 6.1062 2.1188 42 1 12.0437 6.1189 2.1238 43 1 13.2957 5.9463 0.0127 44 1 12.0979 5.7603 -2.1232 45 1 11.1981 7.5003 -2.7607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776728703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:35 Heat of formation + Delta-G solvation = -82.325348 kcal Electronic energy + Delta-G solvation = -22174.855258 eV Core-core repulsion = 18961.273976 eV Total energy + Delta-G solvation = -3213.581283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.84367 -39.36300 -37.59245 -35.78658 -35.71574 -33.69030 -32.91266 -31.10304 -29.54939 -28.04671 -26.77106 -24.72340 -22.82728 -22.34435 -22.29896 -21.77747 -20.97226 -19.60407 -17.78312 -17.18346 -17.09944 -16.63082 -16.55642 -15.89293 -15.87123 -15.46055 -14.99106 -14.86813 -14.48144 -14.22231 -13.98289 -13.88343 -13.81421 -13.52850 -13.13876 -12.97902 -12.80033 -12.61058 -12.47147 -12.40341 -12.23993 -11.98300 -11.80709 -11.68172 -11.55429 -11.47022 -11.34403 -11.21558 -10.84661 -10.77012 -10.02984 -9.44384 -9.42668 -9.05470 -6.39361 0.91350 0.98901 1.46796 1.62214 1.76469 1.80077 2.31122 2.36089 2.72306 3.59035 3.78022 3.97555 4.03330 4.10898 4.20703 4.29556 4.32241 4.42818 4.46770 4.50221 4.54481 4.58624 4.72016 4.73173 4.85853 4.90326 4.92183 4.98774 5.06454 5.08012 5.11426 5.21562 5.25655 5.32973 5.37400 5.48131 5.50166 5.52899 5.56504 5.80309 5.84389 5.99101 6.05337 6.29726 6.45647 6.67222 6.87210 7.02366 7.42578 8.08636 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016055 B = 0.003306 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.592241 B = 8467.877530 C = 9837.501662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.115 4.115 4 C -0.117 4.117 5 C -0.116 4.116 6 C 0.118 3.882 7 N -0.724 5.724 8 C 0.513 3.487 9 O -0.579 6.579 10 C -0.069 4.069 11 C -0.191 4.191 12 C -0.081 4.081 13 C -0.251 4.251 14 C -0.097 4.097 15 C -0.246 4.246 16 C 0.084 3.916 17 C -0.540 4.540 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.819 5.819 21 Si 1.107 2.893 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.252 1.252 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.415 0.585 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.470 -6.426 5.661 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.152 4.152 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.005 4.005 7 N -0.378 5.378 8 C 0.301 3.699 9 O -0.458 6.458 10 C -0.109 4.109 11 C -0.193 4.193 12 C -0.099 4.099 13 C -0.270 4.270 14 C -0.115 4.115 15 C -0.265 4.265 16 C 0.082 3.918 17 C -0.569 4.569 18 H 0.086 0.914 19 C -0.212 4.212 20 N -0.443 5.443 21 Si 0.925 3.075 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.176 1.176 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.251 0.749 39 H 0.132 0.868 40 H 0.114 0.886 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.128 0.872 44 H 0.101 0.899 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.566 -7.026 4.045 20.259 hybrid contribution 0.128 0.230 1.598 1.620 sum -18.438 -6.796 5.643 20.445 Atomic orbital electron populations 1.21779 0.95414 1.01848 1.01982 1.21557 0.96283 0.96833 1.01919 1.21575 0.94139 0.97015 1.02493 1.21510 0.96244 0.95467 1.02267 1.21720 0.91286 0.98624 1.03785 1.21363 0.95763 0.82721 1.00696 1.45931 1.06326 1.09538 1.76019 1.21155 0.82313 0.92012 0.74409 1.90660 1.56896 1.47886 1.50341 1.20273 0.93126 0.92827 1.04626 1.19551 0.94085 1.12402 0.93279 1.20814 0.94394 0.98165 0.96515 1.20725 0.94296 1.15032 0.96989 1.20899 0.98621 0.98975 0.93036 1.21151 0.94953 1.13652 0.96777 1.17801 0.91916 0.88561 0.93565 1.20532 1.03512 1.39651 0.93198 0.91416 1.28237 0.92269 0.93165 1.07563 1.70553 1.24929 1.16291 1.32525 0.83130 0.77875 0.76076 0.70378 1.19353 1.20153 1.17581 0.92659 0.92546 0.92477 0.92359 0.92109 0.91381 0.91726 0.92285 0.91831 0.89833 0.90464 0.93905 0.92961 0.74856 0.86754 0.88648 0.86246 0.86277 0.87245 0.89872 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.93 16 2 C -0.13 -1.58 5.93 30.60 0.18 -1.40 16 3 C -0.11 -1.43 5.21 30.59 0.16 -1.27 16 4 C -0.12 -1.77 5.21 30.59 0.16 -1.61 16 5 C -0.12 -1.89 5.33 30.59 0.16 -1.72 16 6 C 0.12 3.01 5.67 86.38 0.49 3.50 16 7 N -0.72 -20.22 5.56 -463.07 -2.57 -22.79 16 8 C 0.51 20.15 7.46 87.66 0.65 20.80 16 9 O -0.58 -29.08 16.03 -3.04 -0.05 -29.13 16 10 C -0.07 -2.66 5.18 29.10 0.15 -2.51 16 11 C -0.19 -9.31 4.43 -19.40 -0.09 -9.39 16 12 C -0.08 -3.64 9.66 22.22 0.21 -3.43 16 13 C -0.25 -11.41 10.05 22.46 0.23 -11.19 16 14 C -0.10 -4.77 10.02 22.22 0.22 -4.54 16 15 C -0.25 -13.65 7.95 22.73 0.18 -13.47 16 16 C 0.08 4.67 5.30 -21.29 -0.11 4.55 16 17 C -0.54 -29.73 8.08 23.46 0.19 -29.54 16 18 H 0.07 3.65 6.73 -2.91 -0.02 3.64 16 19 C 0.00 0.20 4.94 85.25 0.42 0.62 16 20 N -0.82 -45.50 12.31 21.82 0.27 -45.23 16 21 Si 1.11 45.26 30.00 68.60 2.06 47.32 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 23 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 37 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.41 8.33 8.47 -92.71 -0.79 7.55 16 39 H 0.11 3.43 8.05 -2.39 -0.02 3.41 16 40 H 0.10 3.67 7.06 -2.39 -0.02 3.65 16 41 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 42 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 43 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 44 H 0.08 4.84 6.49 -2.91 -0.02 4.82 16 45 H 0.28 16.36 6.68 -92.71 -0.62 15.74 16 Total: -1.00 -70.24 369.09 3.95 -66.28 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: 0.32 Total: 35.08 kcal Atomic # 6 Polarization: -55.46 SS G_CDS: 3.93 Total: -51.53 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: -2.30 Total: -68.02 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.05 Total: -29.13 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.06 Total: 47.32 kcal Total: -70.24 3.95 -66.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776728703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.041 kcal (2) G-P(sol) polarization free energy of solvation -70.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds