Wall clock time and date at job start Tue Mar 31 2020 06:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47052 * 2 1 4 4 C 1.53006 * 109.47058 * 120.00024 * 2 1 3 5 5 C 1.53000 * 109.46926 * 64.99841 * 4 2 1 6 6 N 1.46501 * 109.47087 * 179.97438 * 5 4 2 7 7 C 1.46498 * 120.00443 * 270.00601 * 6 5 4 8 8 C 1.34784 * 119.99968 * 89.99755 * 6 5 4 9 9 O 1.21280 * 119.99871 * 0.02562 * 8 6 5 10 10 C 1.50701 * 119.99906 * 180.02562 * 8 6 5 11 11 C 1.50700 * 109.46813 * 180.02562 * 10 8 6 12 12 C 1.37640 * 120.13180 * 265.30632 * 11 10 8 13 13 C 1.38613 * 120.24862 * 180.32332 * 12 11 10 14 14 C 1.38655 * 120.50174 * 359.67182 * 13 12 11 15 15 C 1.37598 * 120.24576 * 359.97438 * 14 13 12 16 16 C 1.40702 * 120.12495 * 85.00356 * 11 10 8 17 17 C 1.41393 * 120.24620 * 359.97406 * 16 11 10 18 18 H 1.07999 * 119.99787 * 29.07372 * 17 16 11 19 19 C 1.39938 * 120.00244 * 209.07592 * 17 16 11 20 20 N 1.30823 * 120.00241 * 197.10039 * 19 17 16 21 21 Si 1.86803 * 119.99882 * 17.09514 * 19 17 16 22 22 H 1.48495 * 109.47432 * 270.00073 * 21 19 17 23 23 H 1.48498 * 109.46929 * 30.00589 * 21 19 17 24 24 H 1.48504 * 109.46998 * 150.00206 * 21 19 17 25 25 H 1.08996 * 109.47281 * 299.99748 * 1 2 3 26 26 H 1.08997 * 109.47392 * 60.00181 * 1 2 3 27 27 H 1.09008 * 109.47315 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47208 * 239.99499 * 2 1 3 29 29 H 1.09006 * 109.46827 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47392 * 299.99584 * 3 2 1 31 31 H 1.09000 * 109.47299 * 60.00195 * 3 2 1 32 32 H 1.09004 * 109.46891 * 304.99943 * 4 2 1 33 33 H 1.08994 * 109.47231 * 184.99975 * 4 2 1 34 34 H 1.08995 * 109.47424 * 60.00198 * 5 4 2 35 35 H 1.09000 * 109.47156 * 299.99699 * 5 4 2 36 36 H 1.09005 * 109.46741 * 270.00052 * 7 6 5 37 37 H 1.09001 * 109.47242 * 29.99066 * 7 6 5 38 38 H 1.08995 * 109.47992 * 149.99628 * 7 6 5 39 39 H 1.08999 * 109.47299 * 60.00523 * 10 8 6 40 40 H 1.08998 * 109.47401 * 299.99992 * 10 8 6 41 41 H 1.08005 * 119.87130 * 0.02562 * 12 11 10 42 42 H 1.08001 * 119.74473 * 179.69460 * 13 12 11 43 43 H 1.08002 * 119.87493 * 180.02562 * 14 13 12 44 44 H 1.08003 * 120.12022 * 180.02562 * 15 14 13 45 45 H 0.97004 * 119.99819 * 355.45620 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1880 6 7 2.1240 -2.8863 2.3838 7 6 3.4523 -3.5042 2.3814 8 6 1.3517 -2.9531 3.4865 9 8 0.2520 -2.4418 3.4885 10 6 1.8548 -3.6632 4.7168 11 6 0.8083 -3.5953 5.7991 12 6 0.8591 -2.5993 6.7478 13 6 -0.0983 -2.5385 7.7483 14 6 -1.1205 -3.4738 7.8019 15 6 -1.1951 -4.4739 6.8598 16 6 -0.2280 -4.5461 5.8400 17 6 -0.2943 -5.5697 4.8668 18 1 0.6107 -5.9336 4.4034 19 6 -1.5327 -6.1111 4.5040 20 7 -1.5867 -7.2571 3.8753 21 14 -3.1087 -5.1975 4.9176 22 1 -3.5929 -5.6257 6.2545 23 1 -2.8447 -3.7362 4.9313 24 1 -4.1415 -5.5043 3.8955 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 3.1262 -0.6444 1.2952 34 1 2.0697 -2.6550 0.3003 35 1 0.5488 -2.2724 1.1421 36 1 3.3721 -4.5365 2.0404 37 1 4.1095 -2.9503 1.7111 38 1 3.8636 -3.4858 3.3906 39 1 2.7695 -3.1834 5.0648 40 1 2.0606 -4.7061 4.4758 41 1 1.6507 -1.8653 6.7152 42 1 -0.0479 -1.7564 8.4914 43 1 -1.8614 -3.4166 8.5857 44 1 -1.9924 -5.2011 6.9033 45 1 -0.7678 -7.6995 3.6021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776805026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:10 Heat of formation + Delta-G solvation = -58.590293 kcal Electronic energy + Delta-G solvation = -23557.095381 eV Core-core repulsion = 20344.543327 eV Total energy + Delta-G solvation = -3212.552053 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03687 -39.48060 -37.79810 -36.02254 -35.60233 -33.60033 -32.01782 -30.81295 -28.51315 -28.05568 -27.37429 -26.41615 -24.38752 -23.17641 -21.62653 -20.92273 -20.15012 -19.83297 -17.99122 -17.41221 -16.87175 -16.78217 -16.24181 -15.98774 -15.66988 -15.49994 -14.90390 -14.63897 -14.48594 -14.31581 -14.00426 -13.85087 -13.65793 -13.59900 -13.19384 -13.18136 -13.02332 -12.89007 -12.68285 -12.58021 -12.23535 -12.14824 -11.93745 -11.84157 -11.60105 -11.58573 -11.47438 -11.14149 -10.86741 -10.69955 -9.57462 -9.55745 -9.34568 -9.15466 -6.48891 0.81061 0.89875 1.29719 1.50125 1.71543 1.81174 2.14500 2.18456 2.69662 3.47852 3.81762 3.90266 4.00584 4.03107 4.16971 4.21061 4.33864 4.38388 4.45133 4.47716 4.52156 4.59785 4.64534 4.72579 4.77357 4.79276 4.85989 4.92846 4.94710 4.97305 5.00483 5.08356 5.10967 5.24505 5.29410 5.41911 5.48557 5.50273 5.60669 5.70907 5.82954 5.89109 6.02297 6.18534 6.44692 6.50121 6.73763 6.88290 7.37927 8.06504 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.005057 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.709331 B = 5535.266782 C = 5916.481963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.142 4.142 4 C -0.117 4.117 5 C 0.111 3.889 6 N -0.626 5.626 7 C 0.074 3.926 8 C 0.513 3.487 9 O -0.572 6.572 10 C -0.067 4.067 11 C -0.176 4.176 12 C -0.080 4.080 13 C -0.230 4.230 14 C -0.088 4.088 15 C -0.266 4.266 16 C 0.086 3.914 17 C -0.533 4.533 18 H 0.057 0.943 19 C 0.015 3.985 20 N -0.853 5.853 21 Si 1.097 2.903 22 H -0.256 1.256 23 H -0.280 1.280 24 H -0.286 1.286 25 H 0.037 0.963 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.098 0.902 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.270 11.789 -6.238 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 C -0.200 4.200 4 C -0.156 4.156 5 C -0.012 4.012 6 N -0.360 5.360 7 C -0.068 4.068 8 C 0.303 3.697 9 O -0.450 6.450 10 C -0.107 4.107 11 C -0.177 4.177 12 C -0.098 4.098 13 C -0.249 4.249 14 C -0.106 4.106 15 C -0.285 4.285 16 C 0.083 3.917 17 C -0.563 4.563 18 H 0.076 0.924 19 C -0.198 4.198 20 N -0.478 5.478 21 Si 0.921 3.079 22 H -0.182 1.182 23 H -0.206 1.206 24 H -0.213 1.213 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.104 0.896 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.116 0.884 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.097 11.836 -6.388 16.238 hybrid contribution 1.433 -0.575 -0.019 1.544 sum 10.530 11.261 -6.408 16.696 Atomic orbital electron populations 1.21902 0.96271 1.01181 1.01476 1.21056 0.95080 0.97016 0.97675 1.21799 1.01436 0.94944 1.01784 1.21901 1.01481 0.94152 0.98023 1.21594 0.99548 0.92915 0.87124 1.48039 1.18602 1.56303 1.13006 1.22019 0.82099 0.98155 1.04532 1.21093 0.84361 0.79054 0.85199 1.90641 1.22366 1.48251 1.83764 1.20318 0.98069 1.01035 0.91252 1.19550 1.00756 0.98254 0.99186 1.20877 0.98457 0.96278 0.94225 1.20880 0.98605 1.02784 1.02651 1.21004 0.97895 0.94250 0.97479 1.21305 1.04003 1.03594 0.99582 1.17781 0.91654 0.90947 0.91286 1.20461 0.95076 1.18857 1.21900 0.92449 1.27821 1.05511 0.93866 0.92604 1.70611 1.33334 1.11664 1.32203 0.83267 0.71971 0.75750 0.76872 1.18161 1.20558 1.21330 0.94367 0.91288 0.93905 0.89497 0.91578 0.91626 0.93764 0.94540 0.90076 0.88391 0.93161 0.92741 0.88178 0.89914 0.86681 0.89615 0.85882 0.85326 0.85722 0.88435 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.95 71.98 0.64 -2.85 16 2 C -0.09 -1.73 2.92 -10.80 -0.03 -1.76 16 3 C -0.14 -2.31 9.19 71.98 0.66 -1.65 16 4 C -0.12 -2.73 5.01 30.60 0.15 -2.58 16 5 C 0.11 3.06 5.16 86.38 0.45 3.51 16 6 N -0.63 -19.27 2.87 -846.75 -2.43 -21.70 16 7 C 0.07 1.52 10.24 127.77 1.31 2.82 16 8 C 0.51 21.07 7.67 87.66 0.67 21.74 16 9 O -0.57 -29.33 15.61 -3.03 -0.05 -29.38 16 10 C -0.07 -2.61 3.91 29.10 0.11 -2.50 16 11 C -0.18 -8.22 4.43 -19.40 -0.09 -8.31 16 12 C -0.08 -3.35 9.66 22.22 0.21 -3.14 16 13 C -0.23 -9.35 10.05 22.46 0.23 -9.13 16 14 C -0.09 -3.86 10.02 22.22 0.22 -3.64 16 15 C -0.27 -13.49 7.26 22.73 0.16 -13.33 16 16 C 0.09 4.57 5.13 -21.29 -0.11 4.47 16 17 C -0.53 -30.30 8.80 23.46 0.21 -30.09 16 18 H 0.06 3.32 6.60 -2.91 -0.02 3.30 16 19 C 0.01 0.85 5.42 85.26 0.46 1.31 16 20 N -0.85 -49.36 13.65 21.82 0.30 -49.06 16 21 Si 1.10 55.23 24.89 68.60 1.71 56.94 16 22 H -0.26 -11.72 6.45 99.48 0.64 -11.08 16 23 H -0.28 -14.94 7.01 99.48 0.70 -14.24 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.04 1.12 6.56 -2.38 -0.02 1.11 16 28 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 34 H 0.10 2.09 8.07 -2.39 -0.02 2.07 16 35 H 0.05 1.76 5.84 -2.39 -0.01 1.75 16 36 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.10 1.38 8.07 -2.39 -0.02 1.36 16 38 H 0.08 1.52 6.44 -2.39 -0.02 1.51 16 39 H 0.12 3.44 7.32 -2.39 -0.02 3.42 16 40 H 0.09 3.42 6.47 -2.39 -0.02 3.40 16 41 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 43 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 44 H 0.10 4.97 4.43 -2.91 -0.01 4.95 16 45 H 0.28 15.65 8.73 -92.71 -0.81 14.84 16 Total: -1.00 -71.76 357.42 5.64 -66.13 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.84 Total: 22.19 kcal Atomic # 6 Polarization: -50.38 SS G_CDS: 5.27 Total: -45.11 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -2.14 Total: -70.76 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.05 Total: -29.38 kcal Atomic # 14 Polarization: 55.23 SS G_CDS: 1.71 Total: 56.94 kcal Total: -71.76 5.64 -66.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776805026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.536 kcal (2) G-P(sol) polarization free energy of solvation -71.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds