Wall clock time and date at job start Tue Mar 31 2020 06:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47377 * 2 1 4 4 C 1.53002 * 109.46750 * 120.00047 * 2 1 3 5 5 C 1.53007 * 109.46855 * 175.00062 * 4 2 1 6 6 C 1.53002 * 109.46855 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.46820 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00051 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99353 * 0.02562 * 8 7 6 10 10 C 1.50692 * 119.99931 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.47000 * 180.02562 * 10 8 7 12 12 C 1.37645 * 120.13007 * 265.30719 * 11 10 8 13 13 C 1.38606 * 120.24649 * 180.32491 * 12 11 10 14 14 C 1.38653 * 120.50471 * 359.65965 * 13 12 11 15 15 C 1.37600 * 120.24898 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12867 * 84.99790 * 11 10 8 17 17 C 1.41400 * 120.24530 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99719 * 25.87056 * 17 16 11 19 19 C 1.39942 * 120.00205 * 205.88123 * 17 16 11 20 20 N 1.30821 * 119.99968 * 16.29869 * 19 17 16 21 21 Si 1.86803 * 120.00009 * 196.30797 * 19 17 16 22 22 H 1.48496 * 109.47194 * 265.18190 * 21 19 17 23 23 H 1.48505 * 109.46937 * 25.18007 * 21 19 17 24 24 H 1.48498 * 109.47234 * 145.18150 * 21 19 17 25 25 H 1.09001 * 109.47259 * 300.00062 * 1 2 3 26 26 H 1.08997 * 109.47126 * 59.99877 * 1 2 3 27 27 H 1.09000 * 109.47469 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46824 * 239.99891 * 2 1 3 29 29 H 1.08997 * 109.47093 * 300.00143 * 3 2 1 30 30 H 1.09001 * 109.46977 * 59.99765 * 3 2 1 31 31 H 1.09001 * 109.47476 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47287 * 54.99885 * 4 2 1 33 33 H 1.09005 * 109.47160 * 294.99487 * 4 2 1 34 34 H 1.08994 * 109.47317 * 59.99842 * 5 4 2 35 35 H 1.08997 * 109.47023 * 299.99696 * 5 4 2 36 36 H 1.08994 * 109.47287 * 59.99824 * 6 5 4 37 37 H 1.08997 * 109.47057 * 299.99675 * 6 5 4 38 38 H 0.97002 * 120.00149 * 0.02562 * 7 6 5 39 39 H 1.09000 * 109.47297 * 60.00731 * 10 8 7 40 40 H 1.08997 * 109.47185 * 300.00030 * 10 8 7 41 41 H 1.07994 * 119.87429 * 0.02562 * 12 11 10 42 42 H 1.08002 * 119.74758 * 179.69746 * 13 12 11 43 43 H 1.07998 * 119.87893 * 180.02562 * 14 13 12 44 44 H 1.07997 * 120.12664 * 180.02562 * 15 14 13 45 45 H 0.97002 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 6 4.0748 -1.5518 2.4376 7 7 5.5348 -1.6575 2.3787 8 6 6.2079 -2.2590 3.3795 9 8 5.6047 -2.7132 4.3286 10 6 7.7097 -2.3672 3.3191 11 6 8.2120 -3.0772 4.5498 12 6 8.6314 -2.3528 5.6426 13 6 9.1002 -3.0032 6.7732 14 6 9.1459 -4.3882 6.8204 15 6 8.7258 -5.1327 5.7422 16 6 8.2482 -4.4831 4.5888 17 6 7.8133 -5.2379 3.4749 18 1 7.8503 -4.8090 2.4844 19 6 7.3350 -6.5405 3.6560 20 7 6.9883 -6.9500 4.8491 21 14 7.1917 -7.6945 2.1941 22 1 5.8103 -7.6379 1.6523 23 1 8.1538 -7.2812 1.1410 24 1 7.4971 -9.0818 2.6268 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8899 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9994 0.1674 1.1421 35 1 3.8531 -1.3940 0.3004 36 1 3.6401 -2.5503 2.4840 37 1 3.7864 -0.9885 3.3250 38 1 6.0172 -1.2938 1.6197 39 1 8.1443 -1.3687 3.2725 40 1 7.9980 -2.9308 2.4318 41 1 8.5995 -1.2737 5.6170 42 1 9.4317 -2.4268 7.6242 43 1 9.5127 -4.8845 7.7067 44 1 8.7620 -6.2114 5.7812 45 1 6.6571 -7.8531 4.9747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776805672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:39 Heat of formation + Delta-G solvation = -53.998030 kcal Electronic energy + Delta-G solvation = -22505.052502 eV Core-core repulsion = 19292.699584 eV Total energy + Delta-G solvation = -3212.352918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.10215 -37.55626 -37.03345 -34.45549 -33.53637 -31.82141 -30.92487 -29.38862 -27.43807 -27.14193 -25.51105 -24.69111 -21.81232 -20.88431 -20.58689 -20.01308 -19.13261 -17.13685 -16.16867 -15.96277 -15.60695 -15.32800 -14.86483 -14.44480 -14.27325 -14.09125 -13.64697 -13.44819 -13.14426 -12.85162 -12.54786 -12.49053 -12.28258 -11.94238 -11.73018 -11.66857 -11.45769 -11.29085 -11.07944 -11.03128 -10.91127 -10.82795 -10.72281 -10.64226 -10.60064 -10.35766 -9.42496 -9.28771 -9.08297 -8.98593 -8.53661 -7.25474 -7.23783 -6.64478 -4.25345 2.84865 3.03180 3.10182 3.13651 3.31647 3.53906 3.79885 3.98762 4.56623 4.65895 4.70234 4.74938 5.03002 5.11802 5.31521 5.39290 5.45840 5.54894 5.57115 5.60538 5.67723 5.76976 5.81630 5.87806 5.95667 6.00082 6.05163 6.09100 6.18787 6.24196 6.30853 6.35351 6.44247 6.58624 6.83596 6.96260 7.17787 7.35025 7.48579 7.70745 7.97172 8.06545 8.14554 8.19296 8.39056 8.71334 8.97882 9.06568 9.07900 10.30563 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.003773 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.855741 B = 7418.754190 C = 8745.086715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.150 4.150 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.121 3.879 7 N -0.748 5.748 8 C 0.514 3.486 9 O -0.513 6.513 10 C -0.069 4.069 11 C -0.181 4.181 12 C -0.081 4.081 13 C -0.242 4.242 14 C -0.106 4.106 15 C -0.163 4.163 16 C 0.130 3.870 17 C -0.460 4.460 18 H 0.074 0.926 19 C 0.078 3.922 20 N -0.790 5.790 21 Si 0.901 3.099 22 H -0.272 1.272 23 H -0.261 1.261 24 H -0.276 1.276 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.393 0.607 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.116 0.884 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.268 11.124 -10.551 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.207 4.207 4 C -0.151 4.151 5 C -0.168 4.168 6 C -0.003 4.003 7 N -0.403 5.403 8 C 0.301 3.699 9 O -0.386 6.386 10 C -0.109 4.109 11 C -0.183 4.183 12 C -0.099 4.099 13 C -0.262 4.262 14 C -0.124 4.124 15 C -0.182 4.182 16 C 0.127 3.873 17 C -0.490 4.490 18 H 0.092 0.908 19 C -0.139 4.139 20 N -0.415 5.415 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.185 1.185 24 H -0.201 1.201 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.226 0.774 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.134 0.866 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.827 10.560 -9.693 16.331 hybrid contribution -0.076 -0.446 -0.915 1.021 sum -7.902 10.114 -10.607 16.651 Atomic orbital electron populations 1.21846 0.95354 1.01745 1.01602 1.21118 0.95607 0.96387 0.98462 1.21902 1.01294 0.95960 1.01526 1.21575 0.94741 1.00895 0.97893 1.21847 0.96113 1.00895 0.97990 1.21214 0.81135 1.00493 0.97486 1.46131 1.06947 1.62598 1.24655 1.21091 0.90683 0.76497 0.81661 1.90705 1.70095 1.44801 1.32959 1.20249 0.90460 1.00118 1.00041 1.19001 1.10610 0.93727 0.94949 1.20289 0.99318 0.96629 0.93694 1.20291 1.13265 0.94245 0.98354 1.20670 1.00528 0.93805 0.97415 1.21275 1.02938 0.99450 0.94533 1.17332 0.87329 0.90006 0.92584 1.19444 1.37567 0.97437 0.94507 0.90756 1.25838 0.92955 0.98570 0.96577 1.69844 1.30252 1.18240 1.23208 0.86421 0.79280 0.79578 0.82146 1.19771 1.18477 1.20064 0.92706 0.92885 0.92674 0.91252 0.93021 0.92720 0.92347 0.91596 0.91662 0.91298 0.91456 0.91994 0.92230 0.77399 0.90862 0.89106 0.89799 0.89718 0.89636 0.86599 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 2 C -0.10 -0.76 2.92 -90.62 -0.26 -1.03 16 3 C -0.15 -1.10 8.95 37.16 0.33 -0.76 16 4 C -0.11 -1.03 4.68 -26.73 -0.13 -1.15 16 5 C -0.13 -1.29 5.08 -26.73 -0.14 -1.43 16 6 C 0.12 1.70 5.67 -4.04 -0.02 1.68 16 7 N -0.75 -11.54 5.56 -60.30 -0.33 -11.88 16 8 C 0.51 10.65 7.82 -10.99 -0.09 10.56 16 9 O -0.51 -13.38 16.03 5.56 0.09 -13.29 16 10 C -0.07 -1.38 5.35 -29.04 -0.16 -1.53 16 11 C -0.18 -4.46 4.43 -103.91 -0.46 -4.92 16 12 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 13 C -0.24 -5.78 10.05 -39.29 -0.39 -6.17 16 14 C -0.11 -2.64 10.02 -39.66 -0.40 -3.03 16 15 C -0.16 -4.43 8.68 -38.87 -0.34 -4.77 16 16 C 0.13 3.54 5.56 -106.82 -0.59 2.95 16 17 C -0.46 -12.29 8.46 -37.74 -0.32 -12.61 16 18 H 0.07 1.87 6.36 -52.48 -0.33 1.53 16 19 C 0.08 2.03 5.16 -17.34 -0.09 1.94 16 20 N -0.79 -21.50 10.98 55.55 0.61 -20.89 16 21 Si 0.90 19.17 29.59 -169.99 -5.03 14.14 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 23 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.62 6.57 -51.93 -0.34 0.27 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.39 4.66 8.47 -40.82 -0.35 4.31 16 39 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 40 H 0.09 1.73 6.48 -51.93 -0.34 1.39 16 41 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 42 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 44 H 0.12 3.23 6.23 -52.49 -0.33 2.90 16 45 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -32.11 365.95 -9.74 -41.85 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.50 Total: 7.88 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -3.09 Total: -23.32 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.27 Total: -32.76 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.11 -9.74 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776805672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.147 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds