Wall clock time and date at job start Tue Mar 31 2020 06:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47377 * 2 1 4 4 C 1.53002 * 109.46750 * 120.00047 * 2 1 3 5 5 C 1.53007 * 109.46855 * 175.00062 * 4 2 1 6 6 C 1.53002 * 109.46855 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.46820 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00051 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99353 * 0.02562 * 8 7 6 10 10 C 1.50692 * 119.99931 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.47000 * 180.02562 * 10 8 7 12 12 C 1.37645 * 120.13007 * 265.30719 * 11 10 8 13 13 C 1.38606 * 120.24649 * 180.32491 * 12 11 10 14 14 C 1.38653 * 120.50471 * 359.65965 * 13 12 11 15 15 C 1.37600 * 120.24898 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12867 * 84.99790 * 11 10 8 17 17 C 1.41400 * 120.24530 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99719 * 25.87056 * 17 16 11 19 19 C 1.39942 * 120.00205 * 205.88123 * 17 16 11 20 20 N 1.30821 * 119.99968 * 16.29869 * 19 17 16 21 21 Si 1.86803 * 120.00009 * 196.30797 * 19 17 16 22 22 H 1.48496 * 109.47194 * 265.18190 * 21 19 17 23 23 H 1.48505 * 109.46937 * 25.18007 * 21 19 17 24 24 H 1.48498 * 109.47234 * 145.18150 * 21 19 17 25 25 H 1.09001 * 109.47259 * 300.00062 * 1 2 3 26 26 H 1.08997 * 109.47126 * 59.99877 * 1 2 3 27 27 H 1.09000 * 109.47469 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46824 * 239.99891 * 2 1 3 29 29 H 1.08997 * 109.47093 * 300.00143 * 3 2 1 30 30 H 1.09001 * 109.46977 * 59.99765 * 3 2 1 31 31 H 1.09001 * 109.47476 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47287 * 54.99885 * 4 2 1 33 33 H 1.09005 * 109.47160 * 294.99487 * 4 2 1 34 34 H 1.08994 * 109.47317 * 59.99842 * 5 4 2 35 35 H 1.08997 * 109.47023 * 299.99696 * 5 4 2 36 36 H 1.08994 * 109.47287 * 59.99824 * 6 5 4 37 37 H 1.08997 * 109.47057 * 299.99675 * 6 5 4 38 38 H 0.97002 * 120.00149 * 0.02562 * 7 6 5 39 39 H 1.09000 * 109.47297 * 60.00731 * 10 8 7 40 40 H 1.08997 * 109.47185 * 300.00030 * 10 8 7 41 41 H 1.07994 * 119.87429 * 0.02562 * 12 11 10 42 42 H 1.08002 * 119.74758 * 179.69746 * 13 12 11 43 43 H 1.07998 * 119.87893 * 180.02562 * 14 13 12 44 44 H 1.07997 * 120.12664 * 180.02562 * 15 14 13 45 45 H 0.97002 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 6 4.0748 -1.5518 2.4376 7 7 5.5348 -1.6575 2.3787 8 6 6.2079 -2.2590 3.3795 9 8 5.6047 -2.7132 4.3286 10 6 7.7097 -2.3672 3.3191 11 6 8.2120 -3.0772 4.5498 12 6 8.6314 -2.3528 5.6426 13 6 9.1002 -3.0032 6.7732 14 6 9.1459 -4.3882 6.8204 15 6 8.7258 -5.1327 5.7422 16 6 8.2482 -4.4831 4.5888 17 6 7.8133 -5.2379 3.4749 18 1 7.8503 -4.8090 2.4844 19 6 7.3350 -6.5405 3.6560 20 7 6.9883 -6.9500 4.8491 21 14 7.1917 -7.6945 2.1941 22 1 5.8103 -7.6379 1.6523 23 1 8.1538 -7.2812 1.1410 24 1 7.4971 -9.0818 2.6268 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8899 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9994 0.1674 1.1421 35 1 3.8531 -1.3940 0.3004 36 1 3.6401 -2.5503 2.4840 37 1 3.7864 -0.9885 3.3250 38 1 6.0172 -1.2938 1.6197 39 1 8.1443 -1.3687 3.2725 40 1 7.9980 -2.9308 2.4318 41 1 8.5995 -1.2737 5.6170 42 1 9.4317 -2.4268 7.6242 43 1 9.5127 -4.8845 7.7067 44 1 8.7620 -6.2114 5.7812 45 1 6.6571 -7.8531 4.9747 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776805672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:38 Heat of formation + Delta-G solvation = -72.075565 kcal Electronic energy + Delta-G solvation = -22505.836403 eV Core-core repulsion = 19292.699584 eV Total energy + Delta-G solvation = -3213.136819 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71709 -39.16667 -38.05893 -35.73468 -35.46646 -33.51586 -32.08243 -31.32310 -28.74354 -27.98328 -27.09133 -26.17158 -22.86441 -22.76371 -22.12606 -21.01133 -20.60796 -19.06688 -17.70142 -17.36335 -16.91605 -16.82937 -16.15633 -16.05419 -15.47765 -15.34952 -14.96087 -14.80941 -14.38672 -14.34534 -14.27017 -13.55170 -13.35526 -13.28007 -13.06454 -12.94022 -12.75841 -12.61327 -12.56976 -12.55625 -12.46792 -12.10395 -11.98668 -11.57642 -11.43185 -11.35087 -11.31056 -11.16459 -11.00659 -10.67723 -9.95824 -9.21437 -9.16246 -8.56387 -6.25662 1.00947 1.14034 1.35570 1.48542 1.54308 1.92497 2.20931 2.44520 2.82276 3.75796 3.80342 3.96413 4.03931 4.17532 4.22573 4.31293 4.41496 4.52134 4.56268 4.62445 4.69820 4.72836 4.75990 4.80798 4.83973 4.90526 4.97350 5.04739 5.06549 5.11833 5.23934 5.25888 5.26512 5.35959 5.37526 5.52588 5.56196 5.56534 5.63768 5.80223 6.05289 6.15425 6.22688 6.44804 6.73040 6.79845 7.00447 7.13416 7.54876 8.41438 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.003773 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.855741 B = 7418.754190 C = 8745.086715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.113 4.113 5 C -0.116 4.116 6 C 0.120 3.880 7 N -0.725 5.725 8 C 0.513 3.487 9 O -0.578 6.578 10 C -0.068 4.068 11 C -0.187 4.187 12 C -0.092 4.092 13 C -0.245 4.245 14 C -0.117 4.117 15 C -0.197 4.197 16 C 0.095 3.905 17 C -0.485 4.485 18 H 0.083 0.917 19 C 0.029 3.971 20 N -0.833 5.833 21 Si 0.975 3.025 22 H -0.270 1.270 23 H -0.248 1.248 24 H -0.269 1.269 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.049 0.951 38 H 0.415 0.585 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.222 13.057 -12.744 19.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.004 4.004 7 N -0.380 5.380 8 C 0.300 3.700 9 O -0.456 6.456 10 C -0.107 4.107 11 C -0.189 4.189 12 C -0.110 4.110 13 C -0.264 4.264 14 C -0.136 4.136 15 C -0.216 4.216 16 C 0.093 3.907 17 C -0.515 4.515 18 H 0.101 0.899 19 C -0.184 4.184 20 N -0.460 5.460 21 Si 0.796 3.204 22 H -0.195 1.195 23 H -0.171 1.171 24 H -0.194 1.194 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.251 0.749 39 H 0.134 0.866 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.765 12.540 -11.940 18.977 hybrid contribution -0.092 -0.922 -0.165 0.941 sum -7.857 11.618 -12.105 18.527 Atomic orbital electron populations 1.21850 0.95051 1.01705 1.02005 1.21094 0.95887 0.96664 0.97641 1.21902 1.01459 0.95432 1.01850 1.21573 0.94153 1.00680 0.98677 1.21767 0.96498 1.01265 0.95852 1.21307 0.80043 0.99598 0.99454 1.45902 1.07637 1.60586 1.23853 1.21211 0.91048 0.76019 0.81678 1.90687 1.71227 1.47929 1.35727 1.20305 0.90132 1.02009 0.98292 1.19512 1.09237 0.93173 0.96958 1.20745 0.98552 0.98456 0.93276 1.20717 1.12212 0.93958 0.99523 1.20949 1.00365 0.94744 0.97492 1.21304 1.05285 0.98876 0.96162 1.17763 0.88154 0.91745 0.93016 1.19732 1.38418 0.98502 0.94822 0.89894 1.26783 0.92133 1.00017 0.99476 1.69943 1.31579 1.18854 1.25597 0.85305 0.79360 0.77265 0.78461 1.19546 1.17067 1.19400 0.92816 0.91997 0.92976 0.90926 0.92243 0.92922 0.92050 0.92447 0.91940 0.89502 0.90460 0.94464 0.93231 0.74863 0.86640 0.88176 0.86482 0.86721 0.87780 0.88630 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.19 71.98 0.66 -1.27 16 2 C -0.09 -1.28 2.92 -10.79 -0.03 -1.32 16 3 C -0.15 -1.80 8.95 71.98 0.64 -1.16 16 4 C -0.11 -1.88 4.68 30.60 0.14 -1.74 16 5 C -0.12 -2.03 5.08 30.60 0.16 -1.88 16 6 C 0.12 3.27 5.67 86.38 0.49 3.76 16 7 N -0.73 -21.04 5.56 -463.07 -2.57 -23.61 16 8 C 0.51 20.81 7.82 87.65 0.69 21.49 16 9 O -0.58 -30.69 16.03 -3.04 -0.05 -30.74 16 10 C -0.07 -2.59 5.35 29.10 0.16 -2.43 16 11 C -0.19 -9.12 4.43 -19.40 -0.09 -9.21 16 12 C -0.09 -4.22 9.66 22.22 0.21 -4.01 16 13 C -0.24 -11.41 10.05 22.46 0.23 -11.19 16 14 C -0.12 -5.92 10.02 22.22 0.22 -5.70 16 15 C -0.20 -11.14 8.68 22.73 0.20 -10.94 16 16 C 0.10 5.32 5.56 -21.29 -0.12 5.21 16 17 C -0.49 -26.46 8.46 23.46 0.20 -26.26 16 18 H 0.08 4.18 6.36 -2.91 -0.02 4.16 16 19 C 0.03 1.56 5.16 85.26 0.44 2.00 16 20 N -0.83 -47.25 10.98 21.83 0.24 -47.01 16 21 Si 0.98 39.81 29.59 68.60 2.03 41.84 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 24 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.70 6.57 -2.39 -0.02 0.69 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.09 1.26 6.57 -2.39 -0.02 1.24 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.41 8.48 8.47 -92.71 -0.79 7.69 16 39 H 0.12 3.37 8.06 -2.39 -0.02 3.35 16 40 H 0.10 3.62 6.48 -2.39 -0.02 3.61 16 41 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 42 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 43 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 44 H 0.10 5.66 6.23 -2.91 -0.02 5.64 16 45 H 0.28 14.60 8.30 -92.71 -0.77 13.83 16 Total: -1.00 -72.86 365.95 4.03 -68.84 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: 0.18 Total: 35.32 kcal Atomic # 6 Polarization: -48.84 SS G_CDS: 4.20 Total: -44.64 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -2.33 Total: -70.62 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.05 Total: -30.74 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -72.86 4.03 -68.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776805672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.239 kcal (2) G-P(sol) polarization free energy of solvation -72.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds