Wall clock time and date at job start Tue Mar 31 2020 06:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47029 * 2 1 4 4 C 1.53002 * 109.46750 * 119.99946 * 2 1 3 5 5 C 1.52989 * 109.47318 * 54.99931 * 4 2 1 6 6 C 1.52997 * 109.46975 * 294.99595 * 4 2 1 7 7 N 1.46503 * 109.46820 * 174.99795 * 4 2 1 8 8 C 1.34777 * 120.00051 * 179.97438 * 7 4 2 9 9 O 1.21283 * 119.99353 * 0.02562 * 8 7 4 10 10 C 1.50692 * 119.99931 * 180.02562 * 8 7 4 11 11 C 1.50703 * 109.47000 * 180.02562 * 10 8 7 12 12 C 1.37645 * 120.13007 * 265.30719 * 11 10 8 13 13 C 1.38606 * 120.24649 * 180.32491 * 12 11 10 14 14 C 1.38653 * 120.50471 * 359.65965 * 13 12 11 15 15 C 1.37600 * 120.24898 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12867 * 84.99790 * 11 10 8 17 17 C 1.41400 * 120.24530 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99719 * 25.87056 * 17 16 11 19 19 C 1.39942 * 120.00205 * 205.88123 * 17 16 11 20 20 N 1.30821 * 119.99968 * 16.29869 * 19 17 16 21 21 Si 1.86803 * 120.00009 * 196.30797 * 19 17 16 22 22 H 1.48496 * 109.47194 * 265.18190 * 21 19 17 23 23 H 1.48505 * 109.46937 * 25.18007 * 21 19 17 24 24 H 1.48498 * 109.47234 * 145.18150 * 21 19 17 25 25 H 1.09001 * 109.47318 * 300.00717 * 1 2 3 26 26 H 1.09006 * 109.47020 * 59.99726 * 1 2 3 27 27 H 1.08998 * 109.47687 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46824 * 239.99790 * 2 1 3 29 29 H 1.09001 * 109.47129 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47622 * 299.99497 * 3 2 1 31 31 H 1.08995 * 109.47912 * 59.99867 * 3 2 1 32 32 H 1.09006 * 109.47417 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.47514 * 299.99990 * 5 4 2 34 34 H 1.09005 * 109.47367 * 59.99683 * 5 4 2 35 35 H 1.09000 * 109.47731 * 300.00032 * 6 4 2 36 36 H 1.08998 * 109.47252 * 60.00667 * 6 4 2 37 37 H 1.09001 * 109.47447 * 180.02562 * 6 4 2 38 38 H 0.97002 * 120.00149 * 0.02562 * 7 4 2 39 39 H 1.09000 * 109.47297 * 60.00731 * 10 8 7 40 40 H 1.08997 * 109.47185 * 300.00030 * 10 8 7 41 41 H 1.07994 * 119.87429 * 0.02562 * 12 11 10 42 42 H 1.08002 * 119.74758 * 179.69746 * 13 12 11 43 43 H 1.07998 * 119.87893 * 180.02562 * 14 13 12 44 44 H 1.07997 * 120.12664 * 180.02562 * 15 14 13 45 45 H 0.97002 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.4298 -2.1228 1.3138 6 6 1.6352 0.0690 2.4953 7 7 3.5000 -0.8264 1.1906 8 6 4.1730 -1.4283 2.1912 9 8 3.5698 -1.8833 3.1400 10 6 5.6749 -1.5360 2.1311 11 6 6.1772 -2.2465 3.3615 12 6 6.5960 -1.5227 4.4548 13 6 7.0648 -2.1735 5.5852 14 6 7.1110 -3.5585 5.6316 15 6 6.6913 -4.3026 4.5529 16 6 6.2137 -3.6525 3.3997 17 6 5.7794 -4.4068 2.2853 18 1 5.8164 -3.9773 1.2951 19 6 5.3014 -5.7096 2.4656 20 7 4.9546 -6.1199 3.6584 21 14 5.1588 -6.8629 1.0030 22 1 3.7775 -6.8063 0.4609 23 1 6.1210 -6.4487 -0.0496 24 1 5.4646 -8.2504 1.4350 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5139 -0.8899 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.7935 -2.6368 2.2036 33 1 0.3435 -2.0446 1.3574 34 1 1.7182 -2.6858 0.4260 35 1 2.0698 1.0675 2.4494 36 1 0.5489 0.1472 2.5390 37 1 1.9988 -0.4445 3.3853 38 1 3.9824 -0.4622 0.4320 39 1 6.1092 -0.5373 2.0852 40 1 5.9635 -2.0990 1.2436 41 1 6.5638 -0.4435 4.4299 42 1 7.3960 -1.5975 6.4366 43 1 7.4777 -4.0552 6.5177 44 1 6.7278 -5.3813 4.5913 45 1 4.6236 -7.0231 3.7834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776885948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:48 Heat of formation + Delta-G solvation = -35.726029 kcal Electronic energy + Delta-G solvation = -23973.374443 eV Core-core repulsion = 20761.813859 eV Total energy + Delta-G solvation = -3211.560584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.83608 -37.83982 -36.67638 -33.53504 -32.79832 -31.72180 -30.15271 -29.37193 -27.86358 -26.73542 -26.18568 -24.91375 -23.13599 -20.87972 -20.40057 -19.10122 -18.67456 -17.15601 -16.58080 -15.70237 -15.32706 -14.61124 -14.54507 -14.39133 -14.11411 -13.60570 -13.51985 -13.20044 -13.00075 -12.73194 -12.53549 -12.30366 -12.04330 -11.74143 -11.56939 -11.49417 -11.45101 -11.14726 -11.07174 -11.04668 -10.99431 -10.83712 -10.64081 -10.46077 -10.36405 -10.32085 -9.42020 -9.28239 -9.08022 -8.72243 -8.47237 -7.24805 -7.23407 -6.64409 -4.24920 2.84903 3.03698 3.10070 3.13390 3.31653 3.57127 3.80769 3.98681 4.68265 4.74874 4.83270 4.99930 5.37374 5.41508 5.46158 5.56814 5.60718 5.76742 5.83901 5.87268 5.91753 5.96369 5.98910 6.06183 6.13632 6.16232 6.18321 6.29093 6.31673 6.35587 6.45578 6.58536 6.69315 6.78906 6.84809 7.13904 7.17957 7.35263 7.48839 7.71160 7.98155 8.08470 8.18524 8.22002 8.39370 8.71740 8.98384 9.08233 9.13177 10.30505 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014498 B = 0.005830 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.782118 B = 4801.521480 C = 6088.953119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.149 4.149 4 C 0.182 3.818 5 C -0.166 4.166 6 C -0.165 4.165 7 N -0.740 5.740 8 C 0.518 3.482 9 O -0.507 6.507 10 C -0.071 4.071 11 C -0.179 4.179 12 C -0.081 4.081 13 C -0.242 4.242 14 C -0.106 4.106 15 C -0.162 4.162 16 C 0.131 3.869 17 C -0.458 4.458 18 H 0.074 0.926 19 C 0.079 3.921 20 N -0.790 5.790 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.261 1.261 24 H -0.276 1.276 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.391 0.609 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.116 0.884 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.553 9.864 -8.362 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.206 4.206 4 C 0.096 3.904 5 C -0.224 4.224 6 C -0.222 4.222 7 N -0.395 5.395 8 C 0.306 3.694 9 O -0.380 6.380 10 C -0.110 4.110 11 C -0.181 4.181 12 C -0.099 4.099 13 C -0.261 4.261 14 C -0.125 4.125 15 C -0.182 4.182 16 C 0.128 3.872 17 C -0.488 4.488 18 H 0.092 0.908 19 C -0.138 4.138 20 N -0.415 5.415 21 Si 0.724 3.276 22 H -0.198 1.198 23 H -0.185 1.185 24 H -0.201 1.201 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.224 0.776 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.133 0.867 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.102 9.302 -7.514 13.425 hybrid contribution -0.004 -0.448 -0.991 1.088 sum -6.106 8.854 -8.505 13.712 Atomic orbital electron populations 1.21920 0.94561 1.02276 1.01724 1.21337 0.96447 0.96243 0.97602 1.21918 1.01113 0.95873 1.01746 1.20142 0.80525 0.95190 0.94497 1.22287 0.99887 0.96287 1.03943 1.22301 1.00682 0.99842 0.99422 1.46282 1.06395 1.62300 1.24490 1.20958 0.90394 0.76392 0.81691 1.90635 1.69669 1.44718 1.32998 1.20264 0.90852 0.99974 0.99951 1.18992 1.10497 0.93693 0.94883 1.20277 0.99357 0.96580 0.93704 1.20282 1.13269 0.94223 0.98348 1.20664 1.00574 0.93808 0.97414 1.21268 1.02949 0.99418 0.94536 1.17315 0.87324 0.89987 0.92533 1.19426 1.37531 0.97368 0.94477 0.90820 1.25817 0.92981 0.98541 0.96491 1.69843 1.30322 1.18194 1.23175 0.86453 0.79291 0.79640 0.82245 1.19755 1.18525 1.20093 0.92234 0.92801 0.92016 0.90926 0.92595 0.92924 0.92088 0.89726 0.92415 0.93058 0.92813 0.92475 0.90189 0.77605 0.91063 0.89276 0.89885 0.89796 0.89705 0.86658 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.46 37.16 0.31 -1.08 16 2 C -0.10 -1.03 2.32 -90.62 -0.21 -1.24 16 3 C -0.15 -1.39 8.58 37.15 0.32 -1.07 16 4 C 0.18 2.55 0.53 -131.82 -0.07 2.48 16 5 C -0.17 -2.65 7.91 37.15 0.29 -2.36 16 6 C -0.16 -2.37 7.67 37.16 0.28 -2.09 16 7 N -0.74 -11.22 4.83 -47.61 -0.23 -11.45 16 8 C 0.52 10.30 7.24 -10.99 -0.08 10.22 16 9 O -0.51 -12.33 12.24 5.56 0.07 -12.26 16 10 C -0.07 -1.39 5.35 -29.04 -0.16 -1.54 16 11 C -0.18 -4.33 4.43 -103.91 -0.46 -4.79 16 12 C -0.08 -1.89 9.66 -39.66 -0.38 -2.27 16 13 C -0.24 -5.72 10.05 -39.29 -0.39 -6.11 16 14 C -0.11 -2.63 10.02 -39.66 -0.40 -3.02 16 15 C -0.16 -4.38 8.68 -38.87 -0.34 -4.72 16 16 C 0.13 3.51 5.56 -106.82 -0.59 2.92 16 17 C -0.46 -12.09 8.46 -37.74 -0.32 -12.41 16 18 H 0.07 1.84 6.36 -52.48 -0.33 1.50 16 19 C 0.08 2.04 5.16 -17.34 -0.09 1.95 16 20 N -0.79 -21.27 10.98 55.55 0.61 -20.66 16 21 Si 0.90 19.09 29.59 -169.99 -5.03 14.06 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.60 6.35 -51.93 -0.33 0.27 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.51 7.18 -51.93 -0.37 0.14 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.58 6.34 -51.93 -0.33 0.25 16 32 H 0.08 1.72 6.17 -51.93 -0.32 1.40 16 33 H 0.06 0.78 6.35 -51.93 -0.33 0.46 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.71 6.35 -51.93 -0.33 0.38 16 36 H 0.06 0.72 6.57 -51.93 -0.34 0.37 16 37 H 0.08 1.45 6.17 -51.93 -0.32 1.13 16 38 H 0.39 4.77 7.65 -40.82 -0.31 4.46 16 39 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 40 H 0.09 1.69 6.48 -51.93 -0.34 1.36 16 41 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 42 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 43 H 0.08 1.88 8.06 -52.49 -0.42 1.46 16 44 H 0.12 3.20 6.23 -52.49 -0.33 2.87 16 45 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -30.56 346.90 -8.47 -39.03 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.84 Total: 11.19 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -2.28 Total: -25.14 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.38 Total: -32.11 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.56 -8.47 -39.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776885948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.304 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds