Wall clock time and date at job start Tue Mar 31 2020 06:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47029 * 2 1 4 4 C 1.53002 * 109.46750 * 119.99946 * 2 1 3 5 5 C 1.52989 * 109.47318 * 54.99931 * 4 2 1 6 6 C 1.52997 * 109.46975 * 294.99595 * 4 2 1 7 7 N 1.46503 * 109.46820 * 174.99795 * 4 2 1 8 8 C 1.34777 * 120.00051 * 179.97438 * 7 4 2 9 9 O 1.21283 * 119.99353 * 0.02562 * 8 7 4 10 10 C 1.50692 * 119.99931 * 180.02562 * 8 7 4 11 11 C 1.50703 * 109.47000 * 180.02562 * 10 8 7 12 12 C 1.37645 * 120.13007 * 265.30719 * 11 10 8 13 13 C 1.38606 * 120.24649 * 180.32491 * 12 11 10 14 14 C 1.38653 * 120.50471 * 359.65965 * 13 12 11 15 15 C 1.37600 * 120.24898 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12867 * 84.99790 * 11 10 8 17 17 C 1.41400 * 120.24530 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99719 * 25.87056 * 17 16 11 19 19 C 1.39942 * 120.00205 * 205.88123 * 17 16 11 20 20 N 1.30821 * 119.99968 * 16.29869 * 19 17 16 21 21 Si 1.86803 * 120.00009 * 196.30797 * 19 17 16 22 22 H 1.48496 * 109.47194 * 265.18190 * 21 19 17 23 23 H 1.48505 * 109.46937 * 25.18007 * 21 19 17 24 24 H 1.48498 * 109.47234 * 145.18150 * 21 19 17 25 25 H 1.09001 * 109.47318 * 300.00717 * 1 2 3 26 26 H 1.09006 * 109.47020 * 59.99726 * 1 2 3 27 27 H 1.08998 * 109.47687 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46824 * 239.99790 * 2 1 3 29 29 H 1.09001 * 109.47129 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47622 * 299.99497 * 3 2 1 31 31 H 1.08995 * 109.47912 * 59.99867 * 3 2 1 32 32 H 1.09006 * 109.47417 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.47514 * 299.99990 * 5 4 2 34 34 H 1.09005 * 109.47367 * 59.99683 * 5 4 2 35 35 H 1.09000 * 109.47731 * 300.00032 * 6 4 2 36 36 H 1.08998 * 109.47252 * 60.00667 * 6 4 2 37 37 H 1.09001 * 109.47447 * 180.02562 * 6 4 2 38 38 H 0.97002 * 120.00149 * 0.02562 * 7 4 2 39 39 H 1.09000 * 109.47297 * 60.00731 * 10 8 7 40 40 H 1.08997 * 109.47185 * 300.00030 * 10 8 7 41 41 H 1.07994 * 119.87429 * 0.02562 * 12 11 10 42 42 H 1.08002 * 119.74758 * 179.69746 * 13 12 11 43 43 H 1.07998 * 119.87893 * 180.02562 * 14 13 12 44 44 H 1.07997 * 120.12664 * 180.02562 * 15 14 13 45 45 H 0.97002 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.4298 -2.1228 1.3138 6 6 1.6352 0.0690 2.4953 7 7 3.5000 -0.8264 1.1906 8 6 4.1730 -1.4283 2.1912 9 8 3.5698 -1.8833 3.1400 10 6 5.6749 -1.5360 2.1311 11 6 6.1772 -2.2465 3.3615 12 6 6.5960 -1.5227 4.4548 13 6 7.0648 -2.1735 5.5852 14 6 7.1110 -3.5585 5.6316 15 6 6.6913 -4.3026 4.5529 16 6 6.2137 -3.6525 3.3997 17 6 5.7794 -4.4068 2.2853 18 1 5.8164 -3.9773 1.2951 19 6 5.3014 -5.7096 2.4656 20 7 4.9546 -6.1199 3.6584 21 14 5.1588 -6.8629 1.0030 22 1 3.7775 -6.8063 0.4609 23 1 6.1210 -6.4487 -0.0496 24 1 5.4646 -8.2504 1.4350 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5139 -0.8899 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.7935 -2.6368 2.2036 33 1 0.3435 -2.0446 1.3574 34 1 1.7182 -2.6858 0.4260 35 1 2.0698 1.0675 2.4494 36 1 0.5489 0.1472 2.5390 37 1 1.9988 -0.4445 3.3853 38 1 3.9824 -0.4622 0.4320 39 1 6.1092 -0.5373 2.0852 40 1 5.9635 -2.0990 1.2436 41 1 6.5638 -0.4435 4.4299 42 1 7.3960 -1.5975 6.4366 43 1 7.4777 -4.0552 6.5177 44 1 6.7278 -5.3813 4.5913 45 1 4.6236 -7.0231 3.7834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776885948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:47 Heat of formation + Delta-G solvation = -52.931064 kcal Electronic energy + Delta-G solvation = -23974.120509 eV Core-core repulsion = 20761.813859 eV Total energy + Delta-G solvation = -3212.306651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.20645 -39.50057 -38.15731 -35.46050 -34.11391 -33.35492 -31.46364 -31.23981 -28.90581 -28.33451 -27.29024 -26.77339 -24.25943 -22.80892 -21.98871 -20.69716 -19.84463 -19.04320 -17.93566 -17.30443 -16.89350 -16.23015 -16.12921 -15.58713 -15.35862 -15.16812 -15.08402 -14.58759 -14.37888 -14.24700 -13.79879 -13.60462 -13.31575 -13.25790 -13.09358 -12.95397 -12.82653 -12.69059 -12.53834 -12.49796 -12.38499 -12.13599 -12.10179 -11.87646 -11.50920 -11.32905 -11.29908 -11.15415 -11.00118 -10.29593 -9.84289 -9.20139 -9.14281 -8.55826 -6.24314 1.01796 1.15180 1.34610 1.47140 1.53416 2.03410 2.20348 2.48283 2.83009 3.70138 3.79273 3.93795 4.09261 4.21346 4.33262 4.40151 4.44945 4.48957 4.63284 4.64731 4.73092 4.77646 4.81582 4.85601 4.88880 4.96373 5.00629 5.04830 5.09116 5.10038 5.19404 5.26473 5.29657 5.38293 5.38538 5.54627 5.57173 5.62131 5.80689 5.86277 6.06499 6.16518 6.23716 6.45928 6.75842 6.89499 7.01838 7.14658 7.67456 8.41738 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014498 B = 0.005830 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.782118 B = 4801.521480 C = 6088.953119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.148 4.148 4 C 0.180 3.820 5 C -0.162 4.162 6 C -0.159 4.159 7 N -0.721 5.721 8 C 0.518 3.482 9 O -0.559 6.559 10 C -0.071 4.071 11 C -0.183 4.183 12 C -0.092 4.092 13 C -0.244 4.244 14 C -0.118 4.118 15 C -0.196 4.196 16 C 0.098 3.902 17 C -0.481 4.481 18 H 0.081 0.919 19 C 0.032 3.968 20 N -0.832 5.832 21 Si 0.971 3.029 22 H -0.270 1.270 23 H -0.249 1.249 24 H -0.270 1.270 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.408 0.592 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.015 12.116 -10.713 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.205 4.205 4 C 0.094 3.906 5 C -0.220 4.220 6 C -0.217 4.217 7 N -0.375 5.375 8 C 0.305 3.695 9 O -0.437 6.437 10 C -0.110 4.110 11 C -0.184 4.184 12 C -0.110 4.110 13 C -0.263 4.263 14 C -0.136 4.136 15 C -0.215 4.215 16 C 0.096 3.904 17 C -0.511 4.511 18 H 0.099 0.901 19 C -0.181 4.181 20 N -0.459 5.459 21 Si 0.792 3.208 22 H -0.195 1.195 23 H -0.172 1.172 24 H -0.194 1.194 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.245 0.755 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.121 0.879 44 H 0.113 0.887 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.550 11.594 -9.907 16.597 hybrid contribution 0.128 -1.038 -0.191 1.063 sum -6.421 10.556 -10.098 15.957 Atomic orbital electron populations 1.21933 0.93478 1.02269 1.02816 1.21293 0.97259 0.96754 0.95459 1.21915 1.01249 0.94711 1.02613 1.20308 0.79458 0.94400 0.96437 1.22236 1.01352 0.97168 1.01293 1.22225 1.01858 0.99913 0.97655 1.46084 1.07158 1.60600 1.23692 1.20953 0.90471 0.76176 0.81870 1.90643 1.70553 1.47149 1.35309 1.20313 0.91051 1.01585 0.98097 1.19482 1.09020 0.93123 0.96801 1.20709 0.98645 0.98318 0.93308 1.20690 1.12233 0.93923 0.99485 1.20933 1.00470 0.94734 0.97487 1.21285 1.05273 0.98806 0.96147 1.17720 0.88117 0.91673 0.92906 1.19678 1.38350 0.98379 0.94713 0.90149 1.26718 0.92199 0.99945 0.99287 1.69941 1.31651 1.18771 1.25491 0.85370 0.79351 0.77421 0.78672 1.19525 1.17243 1.19422 0.92105 0.90797 0.92598 0.90227 0.92425 0.91002 0.92316 0.94680 0.90277 0.93212 0.91378 0.90687 0.94428 0.75514 0.87238 0.88699 0.86721 0.86894 0.87922 0.88724 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.46 71.98 0.61 -1.70 16 2 C -0.09 -1.60 2.32 -10.80 -0.03 -1.63 16 3 C -0.15 -2.18 8.58 71.98 0.62 -1.56 16 4 C 0.18 4.77 0.53 3.60 0.00 4.77 16 5 C -0.16 -5.18 7.91 71.98 0.57 -4.61 16 6 C -0.16 -4.42 7.67 71.98 0.55 -3.86 16 7 N -0.72 -20.75 4.83 -422.94 -2.04 -22.80 16 8 C 0.52 20.41 7.24 87.65 0.63 21.04 16 9 O -0.56 -28.09 12.24 -3.04 -0.04 -28.13 16 10 C -0.07 -2.71 5.35 29.10 0.16 -2.55 16 11 C -0.18 -8.84 4.43 -19.40 -0.09 -8.93 16 12 C -0.09 -4.19 9.66 22.22 0.21 -3.97 16 13 C -0.24 -11.36 10.05 22.46 0.23 -11.13 16 14 C -0.12 -5.95 10.02 22.22 0.22 -5.73 16 15 C -0.20 -11.02 8.68 22.73 0.20 -10.82 16 16 C 0.10 5.43 5.56 -21.29 -0.12 5.31 16 17 C -0.48 -26.15 8.46 23.46 0.20 -25.95 16 18 H 0.08 4.07 6.36 -2.91 -0.02 4.06 16 19 C 0.03 1.70 5.16 85.26 0.44 2.14 16 20 N -0.83 -47.00 10.98 21.83 0.24 -46.76 16 21 Si 0.97 39.94 29.59 68.60 2.03 41.97 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 23 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 24 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 25 H 0.06 0.94 6.57 -2.39 -0.02 0.93 16 26 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.06 0.94 6.35 -2.39 -0.02 0.93 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 0.83 7.18 -2.39 -0.02 0.81 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.06 0.91 6.34 -2.39 -0.02 0.89 16 32 H 0.03 1.48 6.17 -2.38 -0.01 1.46 16 33 H 0.08 2.11 6.35 -2.39 -0.02 2.09 16 34 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.07 1.67 6.35 -2.39 -0.02 1.65 16 36 H 0.07 1.77 6.57 -2.39 -0.02 1.76 16 37 H 0.04 1.38 6.17 -2.39 -0.01 1.37 16 38 H 0.41 8.83 7.65 -92.71 -0.71 8.12 16 39 H 0.11 3.28 8.06 -2.39 -0.02 3.26 16 40 H 0.09 3.50 6.48 -2.39 -0.02 3.48 16 41 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 44 H 0.09 5.60 6.23 -2.91 -0.02 5.58 16 45 H 0.28 14.55 8.30 -92.71 -0.77 13.79 16 Total: -1.00 -70.67 346.90 4.88 -65.79 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: 0.28 Total: 39.11 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 4.41 Total: -49.18 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -1.80 Total: -69.56 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.04 Total: -28.13 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -70.67 4.88 -65.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776885948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.862 kcal (2) G-P(sol) polarization free energy of solvation -70.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds